BAC Information

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BAC

Clone NameB6Ng01-240N12
Chromosome19 (Build37)
Map Location 30,882,707 - 31,075,641
singlet/doubletdoublet
Overlap genePrkg1, LOC625995
Upstream geneRanbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1
Downstream geneCstf2t, 8430431K14Rik, 1810073H04Rik, Asah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240N12.bB6Ng01-240N12.g
ACCGA050908GA050909
length1,0151,104
definitionB6Ng01-240N12.b B6Ng01-240N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,882,707 - 30,883,712)(31,074,537 - 31,075,641)
sequence
gaattcttctgttaaataaagaagaaagggcatttggttgggtgtaggca
taaatttttgtttgcaccctacttttaataagggttcaacctctcctcta
gcccaccacccagcagaggtaatgaaagaaaaacattattaggatatggg
ggaattggacctgttcagcaatagattttggggggcaaactcaatcttct
ttggcagcagttcagttccgtgccaaacaccaaatacaactcagcagcta
cagaccagtcctctaggcaggcagttggtacaggaacctcatgagcagtt
cttgggttagtttctctcaatggtgtcattaccaaaagttgagcccaaca
acactatataaggtgaaccaatacatacatgttgttagcaaagaataaca
aggcagagcaaagcaaaccaatgctcagggctcatcttctgctgtctgtg
gggtcatatttatactccatcatgagtcctttcaggtgtttgatatatcc
aaacacccattcacctgtgtctgcttcaggactacattctttcacgtgtc
tgcttcagctagacatcctttcacctgtctgccccagcaaaacatcattt
gacatagctaactttccaaagaactagaagtttccacttcagttgggcct
taagactgtaacttaaagggaggtgagggagaagtcaacgaaatcagaac
ctgtggtggttgcacgtctctggaaccataatgttggctgaataatgtag
agaataaacagaaaattaagtcataaacaaaaatgtcccgctgactccta
cttctttctctatggataatctattctcatcagcaacatgtcataggaaa
gaccagagtgcattcctagggatcttctttttcaatacagaagattcagt
ttcttgaatgttgcttcaatttctccagaactttgcaggatcattcccct
ccccgaagcccccgaagcccctcccagcatggacatttgaatgaatggga
tcggatgtcttacga
gaattccttgagttccgtggacatcttggcggtttgtcgatactggcagt
cgtacttgttcaggcggttggaaccagtactataggctggcttacagtgc
aagcacacgtgtcttatagttctggatgtgaactcttagaacaagacatc
tgttggtgatgatcctttcctctcacaaacacttggtccaagtgtgtaga
cagaggccggtctgcctgcatccctctgattaggtcattggccccatctc
tggagcatcctctttctgatctcatctaaacacaatcaacacataaaggt
cccttctcctactttggtacttggggcttcaagtgatgaagaccggagta
cacataacactagctggagaacgatggctttgagtatcccttcagtcagt
ctctcttcagccagcccttctcaccgctccataccacccttgggtaaaat
gcggtgctttttctgagtatttatagccctacaaaattacctttgctctt
ggtttttcttatctattggaccaggaatcagcaggtgttttccgaaaagg
gcctgtgttgggaaatagtttaggctttgggatccatatggtctctgtca
cagttaattcgagagacactatgtaaatgaacagacatggctgggtacca
agaagaattttatggacattgaaatttatttcagataattttcatgtgtc
ataaaatgtgcttctattttaaaattttcagctatgtaaaaatgcaaaaa
tctgtctttgctagtagagtacaaaaaaccagaccactggctaggctctg
tgcagatagtagtctgtgggcctttgtagtaaattccaagtttcttgtgg
atggggctgtgaatttttttgtttgttgtttccttttatttatttatttt
tgttctttttactgtcatatctaccattggtgtctgccatacacacacac
acacacacacacacacacacacacacacacgaatgatataatacagctga
ataaatatttgagtctggcagtactttgactcatagatgcctgtcttctg
tattcttccaagagttggaattggaaagcagacgatctctcaccaaaagt
taag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30882707_30883712
seq2: B6Ng01-240N12.b_47_1061

seq1  GAATTCTTCTGTTAAATAAAGAAGAAAGGGCATTTGGTTGGGTGTAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTTAAATAAAGAAGAAAGGGCATTTGGTTGGGTGTAGGCA  50

seq1  TAAATTTTTGTTTGCACCCTACTTTTAATAAGGGTTCAACCTCTCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTGTTTGCACCCTACTTTTAATAAGGGTTCAACCTCTCCTCTA  100

seq1  GCCCACCACCCAGCAGAGGTAATGAAAGAAAAACATTATTAGGATATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCACCCAGCAGAGGTAATGAAAGAAAAACATTATTAGGATATGGG  150

seq1  GGAATTGGACCTGTTCAGCAATAGATTTTGGGGGGCAAACTCAATCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGACCTGTTCAGCAATAGATTTTGGGGGGCAAACTCAATCTTCT  200

seq1  TTGGCAGCAGTTCAGTTCCGTGCCAAACACCAAATACAACTCAGCAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCAGTTCAGTTCCGTGCCAAACACCAAATACAACTCAGCAGCTA  250

seq1  CAGACCAGTCCTCTAGGCAGGCAGTTGGTACAGGAACCTCATGAGCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGTCCTCTAGGCAGGCAGTTGGTACAGGAACCTCATGAGCAGTT  300

seq1  CTTGGGTTAGTTTCTCTCAATGGTGTCATTACCAAAAGTTGAGCCCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTAGTTTCTCTCAATGGTGTCATTACCAAAAGTTGAGCCCAACA  350

seq1  ACACTATATAAGGTGAACCAATACATACATGTTGTTAGCAAAGAATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATATAAGGTGAACCAATACATACATGTTGTTAGCAAAGAATAACA  400

seq1  AGGCAGAGCAAAGCAAACCAATGCTCAGGGCTCATCTTCTGCTGTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCAAAGCAAACCAATGCTCAGGGCTCATCTTCTGCTGTCTGTG  450

seq1  GGGTCATATTTATACTCCATCATGAGTCCTTTCAGGTGTTTGATATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATATTTATACTCCATCATGAGTCCTTTCAGGTGTTTGATATATCC  500

seq1  AAACACCCATTCACCTGTGTCTGCTTCAGGACTACATTCTTTCACGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCATTCACCTGTGTCTGCTTCAGGACTACATTCTTTCACGTGTC  550

seq1  TGCTTCAGCTAGACATCCTTTCACCTGTCTGCCCCAGCAAAACATCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGCTAGACATCCTTTCACCTGTCTGCCCCAGCAAAACATCATTT  600

seq1  GACATAGCTAACTTTCCAAAGAACTAGAAGTTTCCACTTCAGTTGGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCTAACTTTCCAAAGAACTAGAAGTTTCCACTTCAGTTGGGCCT  650

seq1  TAAGACTGTAACTTAAAGGGAGGTGAGGGAGAAGTCAACGAAATCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGTAACTTAAAGGGAGGTGAGGGAGAAGTCAACGAAATCAGAAC  700

seq1  CTGTGGTGGTTGCACGTCTCTGGAACCATAATGTTGGCTGAATAATGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGTTGCACGTCTCTGGAACCATAATGTTGGCTGAATAATGTAG  750

seq1  AGAATAAAACAGAAAATTAAGTCATAAACAAAAATGTCCCGCTGACTCCT  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAT-AAACAGAAAATTAAGTCATAAACAAAAATGTCCCGCTGACTCCT  799

seq1  ACTTCTTTCTCTATGGATAATCTATTCTCATCAGCAACATGTCATAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCTCTATGGATAATCTATTCTCATCAGCAACATGTCATAGGAA  849

seq1  AGACCAGAGTGCATTCCTAGGGATCTTC-TTTTCAATACAGAAGA-TCAG  898
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGACCAGAGTGCATTCCTAGGGATCTTCTTTTTCAATACAGAAGATTCAG  899

seq1  TTTCTTGAATGTTGC-TCAATTTCTCCAGAAC-TTGCA-GATCATT-CCC  944
      ||||||||||||||| |||||||||||||||| ||||| ||||||| |||
seq2  TTTCTTGAATGTTGCTTCAATTTCTCCAGAACTTTGCAGGATCATTCCCC  949

seq1  TCCCCG-AGCCCCCG-AGCCCCTCCCCGGCATGGACA-TTGAATGAAT-G  990
      |||||| |||||||| ||||||| ||| ||||||||| |||||||||| |
seq2  TCCCCGAAGCCCCCGAAGCCCCT-CCCAGCATGGACATTTGAATGAATGG  998

seq1  GAT-GGATGTCATACGA  1006
      ||| ||||||| |||||
seq2  GATCGGATGTCTTACGA  1015

seq1: chr19_31074537_31075641
seq2: B6Ng01-240N12.g_67_1170 (reverse)

seq1  CTTAACTTTTGGTGAGGAATTCGTCTGCTGTCCAATTCAAACTC-TGGAA  49
      ||||||||||||||| ||  ||||||||| |||||||| ||||| |||||
seq2  CTTAACTTTTGGTGA-GAGATCGTCTGCTTTCCAATTCCAACTCTTGGAA  49

seq1  GAATACAG-AGACA-GCATCTATGAGTCCAAAGTACTGCCAGACTCAAAT  97
      |||||||| ||||| |||||||||||| ||||||||||||||||||||||
seq2  GAATACAGAAGACAGGCATCTATGAGT-CAAAGTACTGCCAGACTCAAAT  98

seq1  ATTTATTCAGCCTGTATTATATCATTCGTGTGTGTGTGTGTGTGTGTGTG  147
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCAG-CTGTATTATATCATTCGTGTGTGTGTGTGTGTGTGTGTG  147

seq1  TGTGTGTGTGTGTGTGTATGGCAGACACCAATGGTAGATATGACAGTAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATGGCAGACACCAATGGTAGATATGACAGTAAA  197

seq1  AAGAACAAAAATAAATAAATAAAAGGAAACAAACAAACAAAAAAATTCAC  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGAACAAAAATAAATAAATAAAAGGAAAC-AACAAACAAAAAAATTCAC  246

seq1  AGCCCCATCCACAAGAAACTTGGAATTTACTACAAAGGCCCACAGACTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATCCACAAGAAACTTGGAATTTACTACAAAGGCCCACAGACTAC  296

seq1  TATCTGCACAGAGCCTAGCCAGTGGTCTGGTTTTTTGTACTCTACTAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCACAGAGCCTAGCCAGTGGTCTGGTTTTTTGTACTCTACTAGCA  346

seq1  AAGACAGATTTTTGCATTTTTACATAGCTGAAAATTTTAAAATAGAAGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATTTTTGCATTTTTACATAGCTGAAAATTTTAAAATAGAAGCA  396

seq1  CATTTTATGACACATGAAAATTATCTGAAATAAATTTCAATGTCCATAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGACACATGAAAATTATCTGAAATAAATTTCAATGTCCATAAA  446

seq1  ATTCTTCTTGGTACCCAGCCATGTCTGTTCATTTACATAGTGTCTCTCGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTGGTACCCAGCCATGTCTGTTCATTTACATAGTGTCTCTCGA  496

seq1  ATTAACTGTGACAGAGACCATATGGATCCCAAAGCCTAAACTATTTCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGTGACAGAGACCATATGGATCCCAAAGCCTAAACTATTTCCCA  546

seq1  ACACAGGCCCTTTTCGGAAAACACCTGCTGATTCCTGGTCCAATAGATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCCCTTTTCGGAAAACACCTGCTGATTCCTGGTCCAATAGATAA  596

seq1  GAAAAACCAAGAGCAAAGGTAATTTTGTAGGGCTATAAATACTCAGAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAAGAGCAAAGGTAATTTTGTAGGGCTATAAATACTCAGAAAA  646

seq1  AGCACCGCATTTTACCCAAGGGTGGTATGGAGCGGTGAGAAGGGCTGGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGCATTTTACCCAAGGGTGGTATGGAGCGGTGAGAAGGGCTGGCT  696

seq1  GAAGAGAGACTGACTGAAGGGATACTCAAAGCCATCGTTCTCCAGCTAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGACTGACTGAAGGGATACTCAAAGCCATCGTTCTCCAGCTAGT  746

seq1  GTTATGTGTACTCCGGTCTTCATCACTTGAAGCCCCAAGTACCAAAGTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGTACTCCGGTCTTCATCACTTGAAGCCCCAAGTACCAAAGTAG  796

seq1  GAGAAGGGACCTTTATGTGTTGATTGTGTTTAGATGAGATCAGAAAGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGACCTTTATGTGTTGATTGTGTTTAGATGAGATCAGAAAGAGG  846

seq1  ATGCTCCAGAGATGGGGCCAATGACCTAATCAGAGGGATGCAGGCAGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAGAGATGGGGCCAATGACCTAATCAGAGGGATGCAGGCAGACC  896

seq1  GGCCTCTGTCTACACACTTGGACCAAGTGTTTGTGAGAGGAAAGGATCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGTCTACACACTTGGACCAAGTGTTTGTGAGAGGAAAGGATCAT  946

seq1  CACCAACAGATGTCTTGTTCTAAGAGTTCACATCCAGAACTATAAGACAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAGATGTCTTGTTCTAAGAGTTCACATCCAGAACTATAAGACAC  996

seq1  GTGTGCTTGCACTGTAAGCCAGCCTATAGTACTGGTTCCAACCGCCTGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTGCACTGTAAGCCAGCCTATAGTACTGGTTCCAACCGCCTGAA  1046

seq1  CAAGTACGACTGCCAGTATCGACAAACCGCCAAGATGTCCACGGAACTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACGACTGCCAGTATCGACAAACCGCCAAGATGTCCACGGAACTCA  1096

seq1  AGGAATTC  1105
      ||||||||
seq2  AGGAATTC  1104