BAC Information

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BAC

Clone NameB6Ng01-242D16
Chromosome19 (Build37)
Map Location 56,244,006 - 56,357,340
singlet/doubletdoublet
Overlap genenone
Upstream geneTectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D16.bB6Ng01-242D16.g
ACCGA051930GA051931
length7681,180
definitionB6Ng01-242D16.b B6Ng01-242D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,356,573 - 56,357,340)(56,244,006 - 56,245,183)
sequence
gaattcccggtggtgctttggcatggccagaggaagtgcgccctgccgta
gagctgaaccagaaggctggatggacccatgacagcttttctcctctccg
agacaagttttgaattaccagcacacaatggtgcttaaacagtgccagct
aaaggatggaaggagtgacttgcctctcccaagctggccattttcagtag
taccagcacatgtgttgaccttaaaagttacaaacttggaaatcactcag
ttcttcctttttttcctccccaaccccaacccaaatcctaggcacgtttc
tatctccagaaagttcctcaagtccctccagccctgtgtgccctgtggac
acatgtgtgtccaagtggacagcacctactggctcccctccagcagccct
cacgccaggcagcctgctttcacttcggcttgctgttacattcattttcc
agccactaaaacccaatgcaattctgtcatagccctacgtcttcagtatc
tttcttatgaactgtgaataagccccaccttctaccaaagccctgcttga
tctggctttcaccgacttcaccagccttgctttgtgccctgccacttaat
taatgtattcttctccttgtcttcttgttatcctcccacttagggcttgc
catgacacaatcattgatgaatatctgttggatggataggcgaggggttg
gagataaacagatgggttagttggtagagaaatgtttggatgatgaatga
atgaatgaatgaatgggt
gaattccagaaaaacagccataaacactggaaaagtcttgtctgatttag
gaaaacattccattggatttaaaaggaaatatcctgtgactaatctcgtg
taagacttgggaacgggtctaactgttcagtttggtggtcagggagggac
caaggagaccaagccccttcccaccaccactttgggcactaaatcagttg
gggctgagtttccaaacaaggatttggaataatatgctgtttgatcctca
ggcccccctgccccttttcaatttgtcattgatttcccatcaagagagtt
tgtgcaaccgaatcccccatgctatcctggcactttgggagccagtaaat
aaaacccaaatgttaattcttatgagcacagcattgcctgccaagaaatg
aataatgtacagtggaagaaacagcatcatgtgtcctggccagggagcgg
gtgaatcagtagggcagagttggagagcaggggggagtgcccgagaggca
aaggaagaaaagaagatgcaaaaggaagaggaagtaaaactaactcttag
ggcacacatcctgtagtcttgactcctgtgtgagaactgtcagtaatgag
agatcctctgagcccctgtggctgctctgcagggagtagcatccacactc
actcatcagatcctcacagcatcacaggacgcagatggccactctcctct
gtacagatgaggaaacccaggctcagagaagctaagagattcgccctcca
tgcgtgagaaggataaaggtccatactgtggttcagatgtgtccccaaga
gtttactaagtcctcagtgctgggacatgttggggtatgttcgggtcatg
ggaacaaagaccctcaagagtgaaccagtgtctcctccgtcaggctggat
cagctaccaacagagcagttgttataaaggagacagggctatgtcctcta
tcttataacacacatctggcctgtaggctttccctcaccacaaattgaaa
agatactctcagcctccaaaactagttacaaacaaacaaacaaacaaacc
gcccgagtcttgaatgtgttaccagttcaaataatctggtttagccacac
aaagaacagctctgcttactagattcagatcacgcccacattgtttcttc
ttgaaccccagaatgggaaaaggggagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56356573_56357340
seq2: B6Ng01-242D16.b_50_817 (reverse)

seq1  ACCCATTCATTCATTCATTCATTCATCATCCAAACATTTCTCTACCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCATTCATTCATTCATTCATCATCCAAACATTTCTCTACCAACT  50

seq1  AACCCATCTGTTTATCTCCAACCCCTCGCCTATCCATCCAACAGATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTGTTTATCTCCAACCCCTCGCCTATCCATCCAACAGATATTC  100

seq1  ATCAATGATTGTGTCATGGCAAGCCCTAAGTGGGAGGATAACAAGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGATTGTGTCATGGCAAGCCCTAAGTGGGAGGATAACAAGAAGAC  150

seq1  AAGGAGAAGAATACATTAATTAAGTGGCAGGGCACAAAGCAAGGCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGAATACATTAATTAAGTGGCAGGGCACAAAGCAAGGCTGGTG  200

seq1  AAGTCGGTGAAAGCCAGATCAAGCAGGGCTTTGGTAGAAGGTGGGGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGTGAAAGCCAGATCAAGCAGGGCTTTGGTAGAAGGTGGGGCTTA  250

seq1  TTCACAGTTCATAAGAAAGATACTGAAGACGTAGGGCTATGACAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTTCATAAGAAAGATACTGAAGACGTAGGGCTATGACAGAATTG  300

seq1  CATTGGGTTTTAGTGGCTGGAAAATGAATGTAACAGCAAGCCGAAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTTTTAGTGGCTGGAAAATGAATGTAACAGCAAGCCGAAGTGAA  350

seq1  AGCAGGCTGCCTGGCGTGAGGGCTGCTGGAGGGGAGCCAGTAGGTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGCCTGGCGTGAGGGCTGCTGGAGGGGAGCCAGTAGGTGCTGT  400

seq1  CCACTTGGACACACATGTGTCCACAGGGCACACAGGGCTGGAGGGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGACACACATGTGTCCACAGGGCACACAGGGCTGGAGGGACTTG  450

seq1  AGGAACTTTCTGGAGATAGAAACGTGCCTAGGATTTGGGTTGGGGTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTCTGGAGATAGAAACGTGCCTAGGATTTGGGTTGGGGTTGGG  500

seq1  GAGGAAAAAAAGGAAGAACTGAGTGATTTCCAAGTTTGTAACTTTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAAGGAAGAACTGAGTGATTTCCAAGTTTGTAACTTTTAAGG  550

seq1  TCAACACATGTGCTGGTACTACTGAAAATGGCCAGCTTGGGAGAGGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACATGTGCTGGTACTACTGAAAATGGCCAGCTTGGGAGAGGCAAG  600

seq1  TCACTCCTTCCATCCTTTAGCTGGCACTGTTTAAGCACCATTGTGTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTCCATCCTTTAGCTGGCACTGTTTAAGCACCATTGTGTGCTG  650

seq1  GTAATTCAAAACTTGTCTCGGAGAGGAGAAAAGCTGTCATGGGTCCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAAAACTTGTCTCGGAGAGGAGAAAAGCTGTCATGGGTCCATCC  700

seq1  AGCCTTCTGGTTCAGCTCTACGGCAGGGCGCACTTCCTCTGGCCATGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGGTTCAGCTCTACGGCAGGGCGCACTTCCTCTGGCCATGCCA  750

seq1  AAGCACCACCGGGAATTC  768
      ||||||||||||||||||
seq2  AAGCACCACCGGGAATTC  768

seq1: chr19_56244006_56245183
seq2: B6Ng01-242D16.g_67_1246

seq1  GAATTCCAGAAAAACAGCCATAAACACTGGAAAAGTCTTGTCTGATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAACAGCCATAAACACTGGAAAAGTCTTGTCTGATTTAG  50

seq1  GAAAACATTCCATTGGATTTAAAAGGAAATATCCTGTGACTAATCTCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTCCATTGGATTTAAAAGGAAATATCCTGTGACTAATCTCGTG  100

seq1  TAAGACTTGGGAACGGGTCTAACTGTTCAGTTTGGTGGTCAGGGAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTGGGAACGGGTCTAACTGTTCAGTTTGGTGGTCAGGGAGGGAC  150

seq1  CAAGGAGACCAAGCCCCTTCCCACCACCACTTTGGGCACTAAATCAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGACCAAGCCCCTTCCCACCACCACTTTGGGCACTAAATCAGTTG  200

seq1  GGGCTGAGTTTCCAAACAAGGATTTGGAATAATATGCTGTTTGATCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGTTTCCAAACAAGGATTTGGAATAATATGCTGTTTGATCCTCA  250

seq1  GGCCCCCCTGCCCCTTTTCAATTTGTCATTGATTTCCCATCAAGAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCCTGCCCCTTTTCAATTTGTCATTGATTTCCCATCAAGAGAGTT  300

seq1  TGTGCAACCGAATCCCCCATGCTATCCTGGCACTTTGGGAGCCAGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACCGAATCCCCCATGCTATCCTGGCACTTTGGGAGCCAGTAAAT  350

seq1  AAAACCCAAATGTTAATTCTTATGAGCACAGCATTGCCTGCCAAGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAATGTTAATTCTTATGAGCACAGCATTGCCTGCCAAGAAATG  400

seq1  AATAATGTACAGTGGAAGAAACAGCATCATGTGTCCTGGCCAGGGAGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTACAGTGGAAGAAACAGCATCATGTGTCCTGGCCAGGGAGCGG  450

seq1  GTGAATCAGTAGGGCAGAGTTGGAGAGCAGGGGGGAGTGCCCGAGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAGTAGGGCAGAGTTGGAGAGCAGGGGGGAGTGCCCGAGAGGCA  500

seq1  AAGGAAGAAAAGAAGATGCAAAAGGAAGAGGAAGTAAAACTAACTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAAGAAGATGCAAAAGGAAGAGGAAGTAAAACTAACTCTTAG  550

seq1  GGCACACATCCTGTAGTCTTGACTCCTGTGTGAGAACTGTCAGTAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACATCCTGTAGTCTTGACTCCTGTGTGAGAACTGTCAGTAATGAG  600

seq1  AGATCCTCTGAGCCCCTGTGGCTGCTCTGCAGGGAGTAGCATCCACACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCTGAGCCCCTGTGGCTGCTCTGCAGGGAGTAGCATCCACACTC  650

seq1  ACTCATCAGATCCTCACAGCATCACAGGACGCAGATGGCCACTCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAGATCCTCACAGCATCACAGGACGCAGATGGCCACTCTCCTCT  700

seq1  GTACAGATGAGGAAACCCAGGCTCAGAGAAGCTAAGAGATTCGCCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATGAGGAAACCCAGGCTCAGAGAAGCTAAGAGATTCGCCCTCCA  750

seq1  TGCGTGAGAAGGAT-AAGGTCCATACTGTGGTTCAGATGTGTCCCCAAGA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCGTGAGAAGGATAAAGGTCCATACTGTGGTTCAGATGTGTCCCCAAGA  800

seq1  GTTTACTAAGTCCTCAGTGCTGGGACATGTTGGGGTATGTTCGGGTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTAAGTCCTCAGTGCTGGGACATGTTGGGGTATGTTCGGGTCATG  850

seq1  GGAACAAAGACCCTCAAGAGTGAACCAGTGTCTCCTCCGTCAGGGCTGGA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAACAAAGACCCTCAAGAGTGAACCAGTGTCTCCTCCGTCA-GGCTGGA  899

seq1  TCAGCTACCAACAGAGCAGGTTGTTATAAAGGGAGACAGGGCTATGTCCT  949
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TCAGCTACCAACAGAGCA-GTTGTTATAAA-GGAGACAGGGCTATGTCCT  947

seq1  CTATCTTAT-ACACACATCTGGCCTGTAGGCTTTCCCTCACCACAAATTG  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTATAACACACATCTGGCCTGTAGGCTTTCCCTCACCACAAATTG  997

seq1  AAAAGATACTTCTCAGCCTCCAAAACTAGTTTACAAACAAACAAACAAAC  1048
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAGATAC-TCTCAGCCTCCAAAACTAG-TTACAAACAAACAAACAAAC  1045

seq1  AAA-CGCCCGAGTCTTG-ATGTGTTACCCAGTTTCAAATAATCTGTTTTA  1096
      ||| ||||||||||||| |||||||| |||| ||||||||||||| ||||
seq2  AAACCGCCCGAGTCTTGAATGTGTTA-CCAG-TTCAAATAATCTGGTTTA  1093

seq1  GCCACACAAAG-ACAGCTCTGCTTACTAGAATCAAGATTCACGCCCACAT  1145
      ||||||||||| |||||||||||||||||| || ||| ||||||||||||
seq2  GCCACACAAAGAACAGCTCTGCTTACTAGATTC-AGA-TCACGCCCACAT  1141

seq1  TG-TTCTTC-TGA--CCCAGA--TGGAAAAGGGGAGATG  1178
      || |||||| |||  ||||||   |||||||||||||||
seq2  TGTTTCTTCTTGAACCCCAGAATGGGAAAAGGGGAGATG  1180