BAC Information

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BAC

Clone NameB6Ng01-244H16
Chromosome19 (Build37)
Map Location 58,873,776 - 58,874,766
singlet/doubletsinglet
Overlap geneHspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244H16.bB6Ng01-244H16.g
ACCGA053603GA053604
length1,182990
definitionB6Ng01-244H16.b B6Ng01-244H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaacacatcaaaatgatcatccatcttgttcaagtagacttc
atcccagagatgcaggggtggttcaatatatggaaatccatcaacgtaat
ccactatataaacaaactcaaaaataaaaaccacataagcatctcattag
atgctgagaaaacatttgaaaaaatccaacacctgttcatgataaaagca
atatacagcaaaccagtagcccacatcaaagtaaatggagagtaacttga
aacaatcccactaaaatcagggactagacaaggctgtccactctctcact
acctcttcaatatagtactcaaagtcctagccagagcaattagacaacaa
aaggagatcaaaaggatgcaaattgggaagaagtcaaaatatcattattt
gcagacaatatgatagtatatgtaagtggcccccaaaattccaccagaga
actccaaacctgataaacaacttcagtgaagtagctggagataaaattaa
ctcaaacaaatcagtggcctgtctctgcacaaaggataaacaggctgaga
cagaaattagggaaacaacacccttcacaatagtcacaaataatataaaa
taccttggggtgactctaactaaggaagtgaaagatctgtatgataagaa
ctttaagtctctgaagaaagaaattgaagaagatctcagaagatgggaag
atgtcccatgctcatggattggcaggattaatatagtaaatcttgccaaa
agcaatctacagattcaatgcaatccccatcaaaatttcaactcaattct
tcacagagttagaaaggtcaatttccaaatttatctggaataacaaaaac
ctaggatagcagaaactattctcaacaatgaaagaacctctggtggaaac
accatccctggcctcaaaatgtactacagagcaattgttgataaaactgc
atgggtactggtacaggaacagctgggtagatcatgggaatagaactgaa
gacccagaaatgaaccgaccacttatggtcacttggatcttttgacatgg
agctaaatcatcagtggaaaaaagacacattttcaacaatggtgctagct
cactgtcgtttaggcattgtagaaggactcgtatagtccaatctatcccc
tggtcaaggatcaagtctctaagggcataaag
gaattcttattaaagacaatacaacctctgacagcttgagattccacttg
gcacggccctggcctttgttgctaagcagacaatgtgtatgcttctttca
taagaacctttcttcataagaccagctcaatcaaaactgggaacggtggg
ctcaggcagagccagtgaccagctgatgctcatgggtcagactcagactc
ccataggctcagacagctggatccccctttgctggcttgattttgggtac
ctgaccttcccctctccttccctttcaggggacctgtttcagaagccaga
ggtatccacggtcaagttcctctttctggtgggtggctttgcagaggcgc
cccttttgcagcaggcagtgcagaccgcttttggcgacaaatgcaggatc
atcatcccgcaggatgtgggcctcaccatcctcaagggcgctgtcctctt
cggcctggaccctgccgttatcaaggtgcgccggtcccctctcacctacg
gagtaggtgtgctgaaccgctacgtggaagggaagcaccctcccgagaag
ctattggtcaaggacggcacacgctggtgcaccgacgtcttcgacaagtt
catctccgccgaccagtctgtggctctgggggagctggtcaagcgtagct
acaccccggccaagccttcccagctggtcatcatcatcaacatctacagc
tctgagcatgataacgtcagcttcatcactgacccaggggtgaaaaagtg
tggcacgctccgctgggatctcacggggagcggcggcacagcggttcccg
cccgcagagagatccagaccatcatgcagttcggggacactgagatcaag
gccacgggccgtcgacataccacctcaaagagtgtcaaagtggggatcga
cttcttaaattactaatgtaactgtcctcctggccaacagcccccttgga
cttcatctgcattgctgacctcagcctgactgttctgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58873776_58874766
seq2: B6Ng01-244H16.g_69_1058 (reverse)

seq1  GGACAGAACAGTCAGGCTGAGGTCAGCAAATGCAGATG-AGTCCCAGGGG  49
      ||||||||||||||||||||||||||| |||||||||| ||||| |||||
seq2  GGACAGAACAGTCAGGCTGAGGTCAGC-AATGCAGATGAAGTCCAAGGGG  49

seq1  GCTGGTGGCCAGGAGGGACAGTTACATTAGTAATTTAAGAAGTCGATCCC  99
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGCCAGGA-GGACAGTTACATTAGTAATTTAAGAAGTCGATCCC  98

seq1  CACTTTGACACTCTTTGAGGTGGTTATGTCGACGG-CCGTGGCCTTGATC  148
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CACTTTGACACTCTTTGAGGTGG-TATGTCGACGGCCCGTGGCCTTGATC  147

seq1  TCAGTGTCCCCGAACTGCATGATGGTCTGGATCTCTCTGCGGGCGGGAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCCCGAACTGCATGATGGTCTGGATCTCTCTGCGGGCGGGAAC  197

seq1  CGCTGTGCCGCCGCTCCCCGTGAGATCCAAGCGGAGCGTGCCACACTTTT  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGCTGTGCCGCCGCTCCCCGTGAGATCCCAGCGGAGCGTGCCACACTTTT  247

seq1  TCACCCCTGGGTCAGTGATGAAGCTGACGTTATCATGCTCAGAGCTGTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTGGGTCAGTGATGAAGCTGACGTTATCATGCTCAGAGCTGTAG  297

seq1  ATGTTGATGATGATGACCAGCTGGGAAGGCTTGGCCGGGGTGTAGCTACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGATGATGACCAGCTGGGAAGGCTTGGCCGGGGTGTAGCTACG  347

seq1  CTTGACCAGCTCCCCCAGAGCCACAGACTGGTCGGCGGAGATGAACTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCAGCTCCCCCAGAGCCACAGACTGGTCGGCGGAGATGAACTTGT  397

seq1  CGAAGACGTCGGTGCACCAGCGTGTGCCGTCCTTGACCAATAGCTTCTCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGACGTCGGTGCACCAGCGTGTGCCGTCCTTGACCAATAGCTTCTCG  447

seq1  GGAGGGTGCTTCCCTTCCACGTAGCGGTTCAGCACACCTACTCCGTAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGCTTCCCTTCCACGTAGCGGTTCAGCACACCTACTCCGTAGGT  497

seq1  GAGAGGGGACCGGCGCACCTTGATAACGGCAGGGTCCAGGCCGAAGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGACCGGCGCACCTTGATAACGGCAGGGTCCAGGCCGAAGAGGA  547

seq1  CAGCGCCCTTGAGGATGGTGAGGCCCACATCCTGCGGGATGATGATCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCCTTGAGGATGGTGAGGCCCACATCCTGCGGGATGATGATCCTG  597

seq1  CATTTGTCGCCAAAAGCGGTCTGCACTGCCTGCTGCAAAAGGGGCGCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCGCCAAAAGCGGTCTGCACTGCCTGCTGCAAAAGGGGCGCCTC  647

seq1  TGCAAAGCCACCCACCAGAAAGAGGAACTTGACCGTGGATACCTCTGGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCACCCACCAGAAAGAGGAACTTGACCGTGGATACCTCTGGCT  697

seq1  TCTGAAACAGGTCCCCTGAAAGGGAAGGAGAGGGGAAGGTCAGGTACCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACAGGTCCCCTGAAAGGGAAGGAGAGGGGAAGGTCAGGTACCCA  747

seq1  AAATCAAGCCAGCAAAGGGGGATCCAGCTGTCTGAGCCTATGGGAGTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGCCAGCAAAGGGGGATCCAGCTGTCTGAGCCTATGGGAGTCTG  797

seq1  AGTCTGACCCATGAGCATCAGCTGGTCACTGGCTCTGCCTGAGCCCACCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACCCATGAGCATCAGCTGGTCACTGGCTCTGCCTGAGCCCACCG  847

seq1  TTCCCAGTTTTGATTGAGCTGGTCTTATGAAGAAAGGTTCTTATGAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTTTGATTGAGCTGGTCTTATGAAGAAAGGTTCTTATGAAAGA  897

seq1  AGCATACACATTGTCTGCTTAGCAACAAAGGCCAGGGCCGTGCCAAGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACACATTGTCTGCTTAGCAACAAAGGCCAGGGCCGTGCCAAGTGG  947

seq1  AATCTCAAGCTGTCAGAGGTTGTATTGTCTTTAATAAGAATTC  991
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGCTGTCAGAGGTTGTATTGTCTTTAATAAGAATTC  990