BAC Information

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BAC

Clone NameB6Ng01-245C24
Chromosome19 (Build37)
Map Location 10,095,097 - 10,279,399
singlet/doubletdoublet
Overlap geneRab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik
Upstream geneAhnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1
Downstream geneGm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245C24.bB6Ng01-245C24.g
ACCGA054136GA054137
length7051,143
definitionB6Ng01-245C24.b B6Ng01-245C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,095,097 - 10,095,799)(10,278,258 - 10,279,399)
sequence
gaattctttttaaagaaatttttattagtatggtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtaagttgaggggagagagcacatgtgtcatcacacac
atgttgaagtcagaggacaactttgtgcagttggtactctcctactactt
tttatgtgggttttagggatcaaaatgaggcccccgagcttatacagcaa
acccctttcctcgcttagccatctcactggtcctcacctagaatttttaa
tcctcttggcttagcctcctggatgctgcactgctatgcctagctatcta
acctcactttcaggggctccactgccccaaacagacagacagacagactg
ggcttcccctccaccatttcttacagtttcataggcctgtggtcttgggg
gccaagcccactctaggtgatggagtgaggatgatattttgagaattctg
aaacctaacacagtcctgggaacattatggtttcgttggcagagtccaga
gactgagttctgcactggttctgtcccactgggcagccacacgacattgg
tgtgaccagctggtctcagtttctccacttcctggataggacaaatcatc
atatctctagggagacccaatttctaatggagatcaccctgcctcccagg
agtaaagggccatgcctttaccactggccaagcgactagggagttccaca
gttgc
gaattcaattcagtaaacaattatgtcccccttcccccctaaaagagcca
aggacaatcgctgccatttatggaacctccaaatgcaggcccagtgttgg
gcaacaggaatacaaagacgaatagacatcatcccagaactagatgcacg
tcagatggtggtcactaggaggcgtggcagattaaaaaaaagaagtccag
gaaacgtggcaagaggtgtgtacagactgagagctcccagaagacaagac
aagtacctatgagagttacaagtgttttaccaggaaatggtatttataca
agggccttgcgggataagtaagatttcagcaagggaatccttccagatag
agataactgatcataagaaagaaaaataaaaacgcgaaggttttcaaagt
gcaccctgtgaccttcagaattatagtcaacaacatcataagcacattgt
gatggaaacctcagcctgaggaatacacggtaaggggcttgctttcccgt
ccctaactcaaactagagtttcagcggcgtcccacccaccgggcactcca
tactgaggcctccgcggaagaacgcggtgaggaccgggcacacaagagcc
ctaggtcctggccacagcactgtccgttaactcccatcatctcaccattt
tgccccgcacaggataaaccaccgatccgccaccggaagaacacgtcggc
aggagcaagcgcactgagcaacaggaaaaggatgtggtcccttgcgcgtg
gcattgtgggacttgtagtcccatgttctcaggagtaacgggaactagga
ctatgcggacctgctgtgagtagcatggagtcggactgtgggaaagggtg
gtgtgaagtttaggttttaattcattttttccccagaaagaacgcccact
atgaaagctgctatcggacctggtggggcatacactacatttccaggagc
tgttcgcgcctggcagatcacgtgacgagagcgcgggctttgggaggcgc
gagctggaacgatactgaaagaaccgggcctcggacttgttcagagaacg
ctgttgactccaaatcactgcctagcttgctttaagcttggtgcactcga
gacgggtgaggtcctcccgtaagcgttctctgaagcggacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10095097_10095799
seq2: B6Ng01-245C24.b_47_751

seq1  GAATTCTTTTTAAAGAAATTTTTATTAGTATGGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAAAGAAATTTTTATTAGTATGGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTAAGTTGAGGGGAGAGAGCACATGTGTCATCACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTAAGTTGAGGGGAGAGAGCACATGTGTCATCACACAC  100

seq1  ATGTTGAAGTCAGAGGACAACTTTGTGCAGTTGGTACTCTCCTACTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGTCAGAGGACAACTTTGTGCAGTTGGTACTCTCCTACTACTT  150

seq1  TTTATGTGGGTTTTAGGGATCAAAATGAGGCCCCCGAGCTTATACAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGGGTTTTAGGGATCAAAATGAGGCCCCCGAGCTTATACAGCAA  200

seq1  ACCCCTTTCCTCGCTTAGCCATCTCACTGGTCCTCACCTAGAATTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTCCTCGCTTAGCCATCTCACTGGTCCTCACCTAGAATTTTTAA  250

seq1  TCCTCTTGGCTTAGCCTCCTGGATGCTGCACTGCTATGCCTAGCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGCTTAGCCTCCTGGATGCTGCACTGCTATGCCTAGCTATCTA  300

seq1  ACCTCACTTTCAGGGGCTCCACTGCCCCAAACAGACAGACAGACAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTTTCAGGGGCTCCACTGCCCCAAACAGACAGACAGACAGACTG  350

seq1  GGCTTCCCCTCCACCATTTCTTACAGTTTCATAGGCCTGTGGTCTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCCTCCACCATTTCTTACAGTTTCATAGGCCTGTGGTCTTGGGG  400

seq1  GCCAAGCCCACTCTAGGTGATGGAGTGAGGATGATATTTTGAGAATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCACTCTAGGTGATGGAGTGAGGATGATATTTTGAGAATTCTG  450

seq1  -AACCTAACACAGTCCTGGGAACATTATGG-TTCGTTGGCAGAGTCCAGA  498
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAACCTAACACAGTCCTGGGAACATTATGGTTTCGTTGGCAGAGTCCAGA  500

seq1  GACTGAGTTCTGCACTGGTTCTGTCCCACTGGGCAGCCACACGACATTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTTCTGCACTGGTTCTGTCCCACTGGGCAGCCACACGACATTGG  550

seq1  TGTGACCAGCTGGTCTCAGTTTCTCCACTTCCTGGATAGGACAAATCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTGACCAGCTGGTCTCAGTTTCTCCACTTCCTGGATAGGACAAATCAT-  599

seq1  CATATCTCTAGGGAGACCCAAATTCTAATGGAGATCACCCTGCCTCCCAG  648
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATATCTCTAGGGAGACCCAATTTCTAATGGAGATCACCCTGCCTCCCAG  649

seq1  GAGTTAAAGGCCATGCCTTTACCCCTGGCC-AGCGACTAGGGAGTTCCAC  697
      |||| || ||||||||||||||| |||||| |||||||||||||||||||
seq2  GAGTAAAGGGCCATGCCTTTACCACTGGCCAAGCGACTAGGGAGTTCCAC  699

seq1  AGTTGC  703
      ||||||
seq2  AGTTGC  705

seq1: chr19_10278258_10279399
seq2: B6Ng01-245C24.g_64_1206 (reverse)

seq1  TCTG-CCGCTTTCAGAG-ACGCTTCCGCGA-GACCTCACCCCGTCTCGAG  47
      |||| |||| ||||||| |||||| || || ||||||| |||||||||||
seq2  TCTGTCCGC-TTCAGAGAACGCTTACGGGAGGACCTCA-CCCGTCTCGAG  48

seq1  TGCA-CGAGCCTTAAGC-AGCTA-GCAGTGGTTTGGAGTCCACAGCGTTC  94
      |||| | ||| | |||| ||||| |||||| ||||||||| |||||||||
seq2  TGCACCAAGCTTAAAGCAAGCTAGGCAGTGATTTGGAGTCAACAGCGTTC  98

seq1  TCTGGACAGTCCCGAG--CCCGTTCTTTCAGTATCGTTCCCAGCTTCGCC  142
      |||| |||   |||||  || ||||||||||||||||| ||||| ||| |
seq2  TCTGAACAAGTCCGAGGCCCGGTTCTTTCAGTATCGTT-CCAGC-TCG-C  145

seq1  GCCTTCCAAAGCCCGCGCTCTCGTCACGTGATCTGCCAGGCGCGAACAGC  192
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTCCCAAAGCCCGCGCTCTCGTCACGTGATCTGCCAGGCGCGAACAG-  194

seq1  CTCCTGGGAAATGTAGTGTATGCCCCACCAGGTCCGATAGCAGCTTTCAT  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCT-GGAAATGTAGTGTATGCCCCACCAGGTCCGATAGCAGCTTTCAT  243

seq1  AGTGGGCGTTCTTTCTGGGGAAAAAATGAATTAAAACCTAAACTTCACAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCGTTCTTTCTGGGGAAAAAATGAATTAAAACCTAAACTTCACAC  293

seq1  CACCCTTTCCCACAGTCCGACTCCATGCTACTCACAGCAGGTCCGCATAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTCCCACAGTCCGACTCCATGCTACTCACAGCAGGTCCGCATAG  343

seq1  TCCTAGTTCCCGTTACTCCTGAGAACATGGGACTACAAGTCCCACAATGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCCCGTTACTCCTGAGAACATGGGACTACAAGTCCCACAATGC  393

seq1  CACGCGCAAGGGACCACATCCTTTTCCTGTTGCTCAGTGCGCTTGCTCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGCAAGGGACCACATCCTTTTCCTGTTGCTCAGTGCGCTTGCTCCT  443

seq1  GCCGACGTGTTCTTCCGGTGGCGGATCGGTGGTTTATCCTGTGCGGGGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACGTGTTCTTCCGGTGGCGGATCGGTGGTTTATCCTGTGCGGGGCA  493

seq1  AAATGGTGAGATGATGGGAGTTAACGGACAGTGCTGTGGCCAGGACCTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGAGATGATGGGAGTTAACGGACAGTGCTGTGGCCAGGACCTAG  543

seq1  GGCTCTTGTGTGCCCGGTCCTCACCGCGTTCTTCCGCGGAGGCCTCAGTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGTGTGCCCGGTCCTCACCGCGTTCTTCCGCGGAGGCCTCAGTA  593

seq1  TGGAGTGCCCGGTGGGTGGGACGCCGCTGAAACTCTAGTTTGAGTTAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCCCGGTGGGTGGGACGCCGCTGAAACTCTAGTTTGAGTTAGGG  643

seq1  ACGGGAAAGCAAGCCCCTTACCGTGTATTCCTCAGGCTGAGGTTTCCATC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAGCAAGCCCCTTACCGTGTATTCCTCAGGCTGAGGTTTCCATC  693

seq1  ACAATGTGCTTATGATGTTGTTGACTATAATTCTGAAGGTCACAGGGTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGCTTATGATGTTGTTGACTATAATTCTGAAGGTCACAGGGTGC  743

seq1  ACTTTGAAAACCTTCGCGTTTTTATTTTTCTTTCTTATGATCAGTTATCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAACCTTCGCGTTTTTATTTTTCTTTCTTATGATCAGTTATCT  793

seq1  CTATCTGGAAGGATTCCCTTGCTGAAATCTTACTTATCCCGCAAGGCCCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGGAAGGATTCCCTTGCTGAAATCTTACTTATCCCGCAAGGCCCT  843

seq1  TGTATAAATACCATTTCCTGGTAAAACACTTGTAACTCTCATAGGTACTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATACCATTTCCTGGTAAAACACTTGTAACTCTCATAGGTACTT  893

seq1  GTCTTGTCTTCTGGGAGCTCTCAGTCTGTACACACCTCTTGCCACGTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTTCTGGGAGCTCTCAGTCTGTACACACCTCTTGCCACGTTTC  943

seq1  CTGGACTTCTTTTTTTTAATCTGCCACGCCTCCTAGTGACCACCATCTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTCTTTTTTTTAATCTGCCACGCCTCCTAGTGACCACCATCTGA  993

seq1  CGTGCATCTAGTTCTGGGATGATGTCTATTCGTCTTTGTATTCCTGTTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCTAGTTCTGGGATGATGTCTATTCGTCTTTGTATTCCTGTTGC  1043

seq1  CCAACACTGGGCCTGCATTTGGAGGTTCCATAAATGGCAGCGATTGTCCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGGGCCTGCATTTGGAGGTTCCATAAATGGCAGCGATTGTCCT  1093

seq1  TGGCTCTTTTAGGGGGGAAGGGGGACATAATTGTTTACTGAATTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTAGGGGGGAAGGGGGACATAATTGTTTACTGAATTGAATTC  1143