BAC Information

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BAC

Clone NameB6Ng01-246K07
Chromosome19 (Build37)
Map Location 48,101,947 - 48,275,302
singlet/doubletdoublet
Overlap geneGm969, LOC670576
Upstream genePcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749
Downstream geneSorcs3, LOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246K07.bB6Ng01-246K07.g
ACCGA055205GA055206
length1,1831,161
definitionB6Ng01-246K07.b B6Ng01-246K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,101,947 - 48,103,096)(48,274,159 - 48,275,302)
sequence
gaattctcttcaggtcagatgacttctggcacttgcccggcccaaacaag
ggtgacaatcctaaccttctatttggagtgaactagatgacaccctatta
gtatagacttgacctcttcataaacgagacattataatagtgtgtccttt
taggtgaaaaggacacaggcagccaatctaattagaacattaattttcaa
attactatgagtgttcatttcacgtgaggacccagagacataatttgaat
tttgcaaaaggcacacagtcttgattacttttgtttcttgaaacaattga
atatttcaagccaaaaaaatatgtttccttctcgttttctcatggtgagt
ataaattagaaaagctcgtgcctgctttgtcttcttcacagttggctctg
gacagccctcaatggctccctcgggggcattgtgttacagcagtccttta
cctcgggaaacccttatcttcagctccgaataaaatgcaacaccttgcag
ccgagggatggggagattctgagcaagtcccacagagcaaagccattatc
cggattctcaaaacagggtctttgttcctaagaatcgaaccatggagaca
ggttttctttcaacatgaacatcatgttctttggcgcagccggcatggcc
ataatcatattcacaacaattaagagggaagagttcagaagcagacaagc
tggcaaaatgatgatcatgcttttatgactatcctcaaaacagcaagtgt
gtgccccttagaacgactggctgccctttcttgcccgggttttggtaggg
agcacagcttagttctggcatactttgtgccctgtttggaggagtaaatt
tctgctctagtgcaagcttatatccctttagcactcactgaacccagtca
tggagagaggtgggggtcaggttttcttcttacagcctctcttcttgcat
taagaatctccaaggcacaagcttcactgcttttttagaagataaggtat
cccactgcctgagataacacagccgagtctcaggaataggtcccaaagaa
tggaaaagggatgattagacattttagcagaacaaccacccctggtaata
acacaatacaattatattcaaaaggccttgggtttaaccgggtagtgggg
ggaggaatggctttcggaaggcattaaccatag
gaattctatttcaaacattgtcaaacctaggatgccacaacgttgaccaa
cacccctagacactgagtgttacagccatcataactgtcgctgtcctccc
acccccgaatctgactgccacctccattgtcaccagttcaatttctaatt
gcttctttgttgttattggtcaagcctgggtgaccagcagtaaagactat
gatttagatcccaggaatgaagctgaatggcactacttggtatgtatgaa
gccttggtttgatctacaatacagcatgtacaactacacctctaatctca
gtcttctgggaggtggagacagaggtttacaagtgcagagacattcttta
ctataaaggaaggtccagcctgggctataaagatccagcctgggctaaag
acccagaaaataaaagacgctattatcaacctaaaatgaaaaatgtcgga
taatatgccagtacacagaagagaattcatctgttgggcagccaccaaaa
taaataagtatccattcatacccattaccccaaactaatatttcttagag
aaataataggacctaatttgcctcatcataaacctcttctagtagagaaa
actgaaacagaattctcatgtgatagcatttcaaataatccctatatgga
gctggatatctaatcaacaaaactcttttctgctgcagaagccacggaga
tttgtgtgtgtggtaacacccagtaacatttacaattctggctattgtat
ggtcctagaccaacacagcctcactgattaaaagtccacactttaacaaa
agtatctgtgttttagtcctaaccctaccaatgaccagcccagtggcctt
taaacaatttgcttagctttcctgcttccaaccctcatctacatacacag
gtggtaataaaactttaacggcacagggtgaccatgaagatcaggtaaag
tttaatgtttcgtaaatccattgggaaaggcagatgaagtgctagataag
tttgactgtgagatggttagtctgtcctgttccttgaatggctgaaaaca
ccttaggagacttgggaagagcacaacatgccagggtggttgccttatga
atgcgtacaagaaaaccaatggggccttggaagctctgaagctctggcct
agttcaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48101947_48103096
seq2: B6Ng01-246K07.b_48_1230

seq1  GAATTCTCTTCAGGTCAGATGACTTCTGGCACTTGCCCGGCCCAAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGGTCAGATGACTTCTGGCACTTGCCCGGCCCAAACAAG  50

seq1  GGTGACAATCCTAACCTTCTATTTGGAGTGAACTAGATGACACCCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAATCCTAACCTTCTATTTGGAGTGAACTAGATGACACCCTATTA  100

seq1  GTATAGACTTGACCTCTTCATAAACGAGACATTATAATAGTGTGTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGACTTGACCTCTTCATAAACGAGACATTATAATAGTGTGTCCTTT  150

seq1  TAGGTGAAAAGGACACAGGCAGCCAATCTAATTAGAACATTAATTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAAAGGACACAGGCAGCCAATCTAATTAGAACATTAATTTTCAA  200

seq1  ATTACTATGAGTGTTCATTTCACGTGAGGACCCAGAGACATAATTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGAGTGTTCATTTCACGTGAGGACCCAGAGACATAATTTGAAT  250

seq1  TTTGCAAAAGGCACACAGTCTTGATTACTTTTGTTTCTTGAAACAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAAGGCACACAGTCTTGATTACTTTTGTTTCTTGAAACAATTGA  300

seq1  ATATTTCAAGCCAAAAAAATATGTTTCCTTCTCGTTTTCTCATGGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAGCCAAAAAAATATGTTTCCTTCTCGTTTTCTCATGGTGAGT  350

seq1  ATAAATTAGAAAAGCTCGTGCCTGCTTTGTCTTCTTCACAGTTGGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAGAAAAGCTCGTGCCTGCTTTGTCTTCTTCACAGTTGGCTCTG  400

seq1  GACAGCCCTCAATGGCTCCCTCGGGGGCATTGTGTTACAGCAGTCCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCTCAATGGCTCCCTCGGGGGCATTGTGTTACAGCAGTCCTTTA  450

seq1  CCTCGGGAAACCCTTATCTTCAGCTCCGAATAAAATGCAACACCTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGAAACCCTTATCTTCAGCTCCGAATAAAATGCAACACCTTGCAG  500

seq1  CCGAGGGATGGGGAGATTCTGAGCAAGTCCCACAGAGCAAAGCCATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGATGGGGAGATTCTGAGCAAGTCCCACAGAGCAAAGCCATTATC  550

seq1  CGGATTCTCAAAACAGGGTCTTTGTTCCTAAGAATCGAACCATGGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTCTCAAAACAGGGTCTTTGTTCCTAAGAATCGAACCATGGAGACA  600

seq1  GGTTTTCTTTCAACATGAACATCATGTTCTTTGGCGCAGCCGGCATGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTCAACATGAACATCATGTTCTTTGGCGCAGCCGGCATGGCC  650

seq1  ATAATCATATTCACAACAATTAAGAGGGAAGAGTTCAGAAGCAGACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATATTCACAACAATTAAGAGGGAAGAGTTCAGAAGCAGACAAGC  700

seq1  TGGCAAAATGATGATCATGCTTTTATGACTATCCTCAAAACAGCAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATGATGATCATGCTTTTATGACTATCCTCAAAACAGCAAGTGT  750

seq1  GTGCCCCTTAGAACGACTGGCTGCCCTTTCTTGCCCGGGTTTTGGTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCTTAGAACGACTGGCTGCCCTTTCTTGCCCGGGTTTTGGTAGGG  800

seq1  AGCACAGCTTAGTTCTGGCATACTTTGTGCCCTGTTTGGAGGAGTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTTAGTTCTGGCATACTTTGTGCCCTGTTTGGAGGAGTAAATT  850

seq1  TCTGCTCTAGTGC-AGCTTATATCCC-TTAGCACTCACTGAACCCAGTCA  898
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TCTGCTCTAGTGCAAGCTTATATCCCTTTAGCACTCACTGAACCCAGTCA  900

seq1  TGGAGAGAGGTGGGGGTCAGG-TTTCTTCTTACAGCCTCTC-TCTTGCAT  946
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TGGAGAGAGGTGGGGGTCAGGTTTTCTTCTTACAGCCTCTCTTCTTGCAT  950

seq1  TAAG-ATCTCCAAGGCACAAGC-TCACTGC-TTTTTAG-AGATAAGGTAT  992
      |||| ||||||||||||||||| ||||||| ||||||| |||||||||||
seq2  TAAGAATCTCCAAGGCACAAGCTTCACTGCTTTTTTAGAAGATAAGGTAT  1000

seq1  CCCACTG-CTGAGAT-ACACAG-CGAG-CCCAGGAATA-GTCCCAAAGAA  1037
      ||||||| ||||||| |||||| |||| | |||||||| |||||||||||
seq2  CCCACTGCCTGAGATAACACAGCCGAGTCTCAGGAATAGGTCCCAAAGAA  1050

seq1  TG--AAAAGGATGA-TAGACA-TTTAGCAGAACAACCA-CCCTGGTA--T  1080
      ||  ||| |||||| |||||| |||||||||||||||| ||||||||   
seq2  TGGAAAAGGGATGATTAGACATTTTAGCAGAACAACCACCCCTGGTAATA  1100

seq1  ACAC-ATACA--TATATTCAAAA-GCCT---GGTTAAC--GGTAGTGGGG  1121
      |||| |||||  ||||||||||| ||||   | |||||  ||||||||||
seq2  ACACAATACAATTATATTCAAAAGGCCTTGGGTTTAACCGGGTAGTGGGG  1150

seq1  AGA-----TGCTTTCGGAAGGGCTTTTACCATAG  1150
       ||      |||||||||| ||| || |||||||
seq2  GGAGGAATGGCTTTCGGAA-GGCATTAACCATAG  1183

seq1: chr19_48274159_48275302
seq2: B6Ng01-246K07.g_71_1231 (reverse)

seq1  TCCATTG-ACTAGGCCAGAGCCTTAAGGAGCTCTCAAAGCCCC-TTG--T  46
      ||||||| ||||||||||||| | |  |||||  ||| ||||| |||  |
seq2  TCCATTGAACTAGGCCAGAGCTTCA--GAGCTTCCAAGGCCCCATTGGTT  48

seq1  TTCTGTAACACAATCATAAG-----CACACCTGCATG-TGTGCTCT--CC  88
      ||||   || || |||||||     ||| |  ||||| ||||||||  ||
seq2  TTCTTGTACGCATTCATAAGGCAACCACCCTGGCATGTTGTGCTCTTCCC  98

seq1  CAGTCTCCT-AGGTGTTTTCAACCCATTCAAGGGGACAGACAAGACTAAC  137
       |||||||| |||||||||| | |||||||| || ||||   ||||||||
seq2  AAGTCTCCTAAGGTGTTTTC-AGCCATTCAA-GGAACAGGACAGACTAAC  146

seq1  CATCTCCACAGTCAAACTTATCTAGCACTTCATCTG-CTTTCCAAATGG-  185
      ||||| |||||||||||||||||||||||||||||| |||||| ||||| 
seq2  CATCT-CACAGTCAAACTTATCTAGCACTTCATCTGCCTTTCCCAATGGA  195

seq1  TTTACG-AACATTAA--CTTACCTGATCTTCATGGTCACCCTGTGCCGTT  232
      |||||| ||||||||   ||||||||||||||||||||||||||||||||
seq2  TTTACGAAACATTAAACTTTACCTGATCTTCATGGTCACCCTGTGCCGTT  245

seq1  -AAGTTTTATTACCACCTGTGTATGTAGATGAGGGTTGGAAGCAGG-AAG  280
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGTTTTATTACCACCTGTGTATGTAGATGAGGGTTGGAAGCAGGAAAG  295

seq1  CTAAGCAATTTGTTT-AAGGCCACTGGGCTGGTCATTGGTAGGGTTAGGA  329
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAATTGTTTAAAGGCCACTGGGCTGGTCATTGGTAGGGTTAGGA  345

seq1  CTAAAACACAGATACTTTTGTTAAAGTGTGGACTTTTAATCAGTGAGGCT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACACAGATACTTTTGTTAAAGTGTGGACTTTTAATCAGTGAGGCT  395

seq1  GTGTTGGTCTAGGACCATACAATAGCCAGAATTGT-AATGTTACTGGGTG  428
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGTTGGTCTAGGACCATACAATAGCCAGAATTGTAAATGTTACTGGGTG  445

seq1  TTACCACACACACAAATCTCCGTGGCTTCTGCAGCAGAAAAGAGTTTTGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACACACACAAATCTCCGTGGCTTCTGCAGCAGAAAAGAGTTTTGT  495

seq1  TGATTAGATATCCAGCTCCATATAGGGATTATTTGAAATGCTATCACATG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGATATCCAGCTCCATATAGGGATTATTTGAAATGCTATCACATG  545

seq1  AGAATTCTGTTTCAGTTTTCTCTACTAGAAGAGGTTTATGATGAGGCAAA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGTTTCAGTTTTCTCTACTAGAAGAGGTTTATGATGAGGCAAA  595

seq1  TTAGGTCCTATTATTTCTCTAAGAAATATTAGTTTGGGGTAATGGGTATG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCTATTATTTCTCTAAGAAATATTAGTTTGGGGTAATGGGTATG  645

seq1  AATGGATACTTATTTATTTTGGTGGCTGCCCAACAGATGAATTCTCTTCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATACTTATTTATTTTGGTGGCTGCCCAACAGATGAATTCTCTTCT  695

seq1  GTGTACTGGCATATTATCCGACATTTTTCATTTTAGGTTGATAATAGCGT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGGCATATTATCCGACATTTTTCATTTTAGGTTGATAATAGCGT  745

seq1  CTTTTATTTTCTGGGTCTTTAGCCCAGGCTGGATCTTTATAGCCCAGGCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTCTGGGTCTTTAGCCCAGGCTGGATCTTTATAGCCCAGGCT  795

seq1  GGACCTTCCTTTATAGTAAAGAATGTCTCTGCACTTGTAAACCTCTGTCT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCCTTTATAGTAAAGAATGTCTCTGCACTTGTAAACCTCTGTCT  845

seq1  CCACCTCCCAGAAGACTGAGATTAGAGGTGTAGTTGTACATGCTGTATTG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCCAGAAGACTGAGATTAGAGGTGTAGTTGTACATGCTGTATTG  895

seq1  TAGATCAAACCAAGGCTTCATACATACCAAGTAGTGCCATTCAGCTTCAT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAACCAAGGCTTCATACATACCAAGTAGTGCCATTCAGCTTCAT  945

seq1  TCCTGGGATCTAAATCATAGTCTTTACTGCTGGTCACCCAGGCTTGACCA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGATCTAAATCATAGTCTTTACTGCTGGTCACCCAGGCTTGACCA  995

seq1  ATAACAACAAAGAAGCAATTAGAAATTGAACTGGTGACAATGGAGGTGGC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACAAAGAAGCAATTAGAAATTGAACTGGTGACAATGGAGGTGGC  1045

seq1  AGTCAGATTCGGGGGTGGGAGGACAGCGACAGTTATGATGGCTGTAACAC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTCGGGGGTGGGAGGACAGCGACAGTTATGATGGCTGTAACAC  1095

seq1  TCAGTGTCTAGGGGTGTTGGTCAACGTTGTGGCATCCTAGGTTTGACAAT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTAGGGGTGTTGGTCAACGTTGTGGCATCCTAGGTTTGACAAT  1145

seq1  GTTTGAAATAGAATTC  1144
      ||||||||||||||||
seq2  GTTTGAAATAGAATTC  1161