BAC Information

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BAC

Clone NameB6Ng01-247I02
Chromosome19 (Build37)
Map Location 5,928,055 - 6,124,691
singlet/doubletdoublet
Overlap genePola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15
Upstream geneDpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2
Downstream geneArl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247I02.bB6Ng01-247I02.g
ACCGA055824GA055825
length1,182703
definitionB6Ng01-247I02.b B6Ng01-247I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,123,515 - 6,124,691)(5,928,055 - 5,928,757)
sequence
gaattccaggacagccagggctatacagagaaaccctgtttcaaaaaaac
caaaataaataaataaataaataaaagttgagtatagggctatctagaca
ttcagtatactcacgtttataagataaagatacagttatacaaaggaaaa
ttttctcaaggagctgaggatgtaactcaagaagtcctgagttcaatcct
tagtatcaaaaacaaataataaaatagcttaatttagtagtgcatgctgt
aatcccagcacttgggaggcagaggtcgaaggatttggagtgcaaggcca
gcctctgctacacagtcaatttgaggccatcttaggctacatgaaaccct
gcatgcagaaatccaaaagaaaacttgctccaagccttaaatccaggccc
atttatcccagcatgcccattattctgaaagacactgtgaggggtggcgc
agtgttgcctgtcaggctctggtctcacctggctcccacctttcctttct
cagttcatctcaaagaaggacccagaggatatcaaagaggtgagtgtggc
tcccaggaagaagggctgttcctgtacacatcagcatcagtaagggaaga
gctggtaaccaaggacagccttcttccctgacctgtgctggagagggtgt
gtgcagtccttctcggactctaggatacacttagtgtgggaaggccactt
tccaccgtgctggtccaggtcagttctcaactgcctcacaggtagtagtc
tggaagcggtacagcgacttccgtaagctccacggggacttggcctatac
tcaccgaaacctcttccgtcgcctagaggagtttccggccttcccccgtg
cccaggtgtttggtgagtattgactctgaacctctctgccccagtgtgcg
ggcagcaggaactggtctggtgggaactgtgagtgtgatgttgtaccctg
aacagccatcttttggaaaactagatgggcccttcttcagatggcctcat
tgaaatatggggaagtgagactctgagcaacctcccctttattgtgtgtc
ggcttattgacagttcccagcagatgaggcttcgtcaagtgaaaagcttt
gttctgagccttagttctgtttctctgtttccgatgcacagaggattgca
tagtaccatagaacgatgtctttatattttga
gaattcagaatccacctgcctctgcctcctgagtgctgggattaaaggcg
cgcaccaccatgccaggctgcttttttttttttttttttttttaaactac
atggtaaccctgactgactcggaacctaaaccaggctggcctcaaactca
cagagtccacctgcctctgtctccctgtgtgccagcacggctggcagtac
ttaatctccagttggcaggcagtacttaatctccagttggcaggcagtac
ttcatgctcagttccacaggatgcatcagtgctagcctgatgtcatagag
aaaaactagggccagtcctggaaagggacccaggccacatggtggtatgg
gtaaaagttaaactttgaatatgtccccgaaagaggtatgttgggaattt
actccccaaggcaacggtgttgggaggcggggcctgctgggggctgttga
ggtcagagggctgtaagcccataaaaagtttagttccaactatggaaggg
ctggagagtgcaagcccactttctctctctccctctccccccatctaccc
agtctcccttctgtcttctgccaggggatgacatcgtatgaggaccctca
ccagatgccagctggcatccagatgttctcagacactccagcctccagga
ccagagctggcaacaaaaccggaagttataggggtggaaggttgtggggg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6123515_6124691
seq2: B6Ng01-247I02.b_50_1231 (reverse)

seq1  TCAAAAT---AAG-CATCGTTCCTATGGTAACTAATGC-ATCCTCTGTGC  45
      |||||||   ||| ||||||| ||||||| ||| |||| |||||||||||
seq2  TCAAAATATAAAGACATCGTT-CTATGGT-ACT-ATGCAATCCTCTGTGC  47

seq1  TATC-GAAACAGAG-AACAG-ACTAAGGCTCAGACAAAGGCCTTTCACCT  92
       ||| ||||||||| ||||| |||||||||||||  || || ||||| ||
seq2  -ATCGGAAACAGAGAAACAGAACTAAGGCTCAGAACAAAGCTTTTCA-CT  95

seq1  TGACG-AGCCTCATCTTGCTGGG-ACTGTTCATAGCCCGACACACAATAA  140
      ||||| ||||||||| ||||||| |||||  |||  ||||||||||||||
seq2  TGACGAAGCCTCATC-TGCTGGGAACTGTCAATAAGCCGACACACAATAA  144

seq1  AGGGGAGGTTGCTCAGAGTCTCACTTTCCCCATATTTCAATGAGGCCATC  190
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGGAGGTTGCTCAGAGTCTCAC-TTCCCCATATTTCAATGAGGCCATC  193

seq1  TG-AGAA-GGCCCATCTAGTTTTCC-AAAGATGGCTGTTCAGGGTACAAC  237
      || |||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAGAAGGGCCCATCTAGTTTTCCAAAAGATGGCTGTTCAGGGTACAAC  243

seq1  ATCACACTCACAGTTCCCACCAGACCAGTTCCCTGCTGCCCGCACACTGG  287
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCACACTCACAGTTCCCACCAGACCAGTT-CCTGCTGCCCGCACACTGG  292

seq1  GGCAGAGAGGTTCAGAGTCAATACTCACCAAACACCTGGGCACGGGGGAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGGTTCAGAGTCAATACTCACCAAACACCTGGGCACGGGGGAA  342

seq1  GGCCGGAAACTCCTCTAGGCGACGGAAGAGGTTTCGGTGAGTATAGGCCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGAAACTCCTCTAGGCGACGGAAGAGGTTTCGGTGAGTATAGGCCA  392

seq1  AGTCCCCGTGGAGCTTACGGAAGTCGCTGTACCGCTTCCAGACTACTACC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCGTGGAGCTTACGGAAGTCGCTGTACCGCTTCCAGACTACTACC  442

seq1  TGTGAGGCAGTTGAGAACTGACCTGGACCAGCACGGTGGAAAGTGGCCTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCAGTTGAGAACTGACCTGGACCAGCACGGTGGAAAGTGGCCTT  492

seq1  CCCACACTAAGTGTATCCTAGAGTCCGAGAAGGACTGCACACACCCTCTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTAAGTGTATCCTAGAGTCCGAGAAGGACTGCACACACCCTCTC  542

seq1  CAGCACAGGTCAGGGAAGAAGGCTGTCCTTGGTTACCAGCTCTTCCCTTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGTCAGGGAAGAAGGCTGTCCTTGGTTACCAGCTCTTCCCTTA  592

seq1  CTGATGCTGATGTGTACAGGAACAGCCCTTCTTCCTGGGAGCCACACTCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTGATGTGTACAGGAACAGCCCTTCTTCCTGGGAGCCACACTCA  642

seq1  CCTCTTTGATATCCTCTGGGTCCTTCTTTGAGATGAACTGAGAAAGGAAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGATATCCTCTGGGTCCTTCTTTGAGATGAACTGAGAAAGGAAA  692

seq1  GGTGGGAGCCAGGTGAGACCAGAGCCTGACAGGCAACACTGCGCCACCCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGCCAGGTGAGACCAGAGCCTGACAGGCAACACTGCGCCACCCC  742

seq1  TCACAGTGTCTTTCAGAATAATGGGCATGCTGGGATAAATGGGCCTGGAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTCTTTCAGAATAATGGGCATGCTGGGATAAATGGGCCTGGAT  792

seq1  TTAAGGCTTGGAGCAAGTTTTCTTTTGGATTTCTGCATGCAGGGTTTCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTTGGAGCAAGTTTTCTTTTGGATTTCTGCATGCAGGGTTTCAT  842

seq1  GTAGCCTAAGATGGCCTCAAATTGACTGTGTAGCAGAGGCTGGCCTTGCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAAGATGGCCTCAAATTGACTGTGTAGCAGAGGCTGGCCTTGCA  892

seq1  CTCCAAATCCTTCGACCTCTGCCTCCCAAGTGCTGGGATTACAGCATGCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATCCTTCGACCTCTGCCTCCCAAGTGCTGGGATTACAGCATGCA  942

seq1  CTACTAAATTAAGCTATTTTATTATTTGTTTTTGATACTAAGGATTGAAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAATTAAGCTATTTTATTATTTGTTTTTGATACTAAGGATTGAAC  992

seq1  TCAGGACTTCTTGAGTTACATCCTCAGCTCCTTGAGAAAATTTTCCTTTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTTCTTGAGTTACATCCTCAGCTCCTTGAGAAAATTTTCCTTTG  1042

seq1  TATAACTGTATCTTTATCTTATAAACGTGAGTATACTGAATGTCTAGATA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGTATCTTTATCTTATAAACGTGAGTATACTGAATGTCTAGATA  1092

seq1  GCCCTATACTCAACTTTTATTTATTTATTTATTTATTTTGGTTTTTTTGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATACTCAACTTTTATTTATTTATTTATTTATTTTGGTTTTTTTGA  1142

seq1  AACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1177
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1182

seq1: chr19_5928055_5928757
seq2: B6Ng01-247I02.g_69_771

seq1  GAATTCAAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCG  50

seq1  CGCACCACCATGCCAGGCTGCTTTTTTTTTTTTTTTTTTTTTTAAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCACCATGCCAGGCTGCTTTTTTTTTTTTTTTTTTTTTTAAACTAC  100

seq1  ATGGTAACCCTGACTGACTCGGAACCTAAACCAGGCTGGCCTCAAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACCCTGACTGACTCGGAACCTAAACCAGGCTGGCCTCAAACTCA  150

seq1  CAGAGTCCACCTGCCTCTGTCTCCCTGTGTGCCAGCACGGCTGGCAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCACCTGCCTCTGTCTCCCTGTGTGCCAGCACGGCTGGCAGTAC  200

seq1  TTAATCTCCAGTTGGCAGGCAGTACTTAATCTCCAGTTGGCAGGCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCCAGTTGGCAGGCAGTACTTAATCTCCAGTTGGCAGGCAGTAC  250

seq1  TTCATGCTCAGTTCCACAGGATGCATCAGTGCTAGCCTGATGTCATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTCAGTTCCACAGGATGCATCAGTGCTAGCCTGATGTCATAGAG  300

seq1  AAAAACTAGGGCCAGTCCTGGAAAGGGACCCAGGCCACATGGTGGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAGGGCCAGTCCTGGAAAGGGACCCAGGCCACATGGTGGTATGG  350

seq1  GTAAAAGTTAAACTTTGAATATGTCCCCGAAAGAGGTATGTTGGGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTTAAACTTTGAATATGTCCCCGAAAGAGGTATGTTGGGAATTT  400

seq1  ACTCCCCAAGGCAACGGTGTTGGGAGGCGGGGCCTGCTGGGGGCTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAAGGCAACGGTGTTGGGAGGCGGGGCCTGCTGGGGGCTGTTGA  450

seq1  GGTCAGAGGGCTGTAAGCCCATAAAAAGTTTAGTTCCAACTATGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGGCTGTAAGCCCATAAAAAGTTTAGTTCCAACTATGGAAGGG  500

seq1  CTGGAGAGTGCAAGCCCACTTTCTCTCTCTCCCTCTCCCCCCATCTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGTGCAAGCCCACTTTCTCTCTCTCCCTCTCCCCCCATCTACCC  550

seq1  AGTCTCCCTTCTGTCTTCTGCCAGGGGATGACATCGTATGAGGACCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTCTGTCTTCTGCCAGGGGATGACATCGTATGAGGACCCTCA  600

seq1  CCAGATGCCAGCTGGCATCCAGATGTTCTCAGACACTCCAGCCTCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCAGCTGGCATCCAGATGTTCTCAGACACTCCAGCCTCCAGGA  650

seq1  CCAGAGCTGGCAACAAAACCGGAAGTTATAGGGGTGGAAGGTTGTGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGGCAACAAAACCGGAAGTTATAGGGGTGGAAGGTTGTGGGGG  700

seq1  GGG  703
      |||
seq2  GGG  703