BAC Information

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BAC

Clone NameB6Ng01-247K22
Chromosome19 (Build37)
Map Location 9,682,666 - 9,731,295
singlet/doubletdoublet
Overlap geneLOC623688
Upstream geneSlc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b
Downstream geneLOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247K22.bB6Ng01-247K22.g
ACCGA055953GA055954
length1,1171,052
definitionB6Ng01-247K22.b B6Ng01-247K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,682,666 - 9,683,643)(9,730,250 - 9,731,295)
sequence
gaattcatacaggaaagaaaccttacaaatgcagtgaatgtgacaaatgc
tttaccctacaatccagtcttagtattcatcagagaatccatacaggaga
gaaaccttacaaatacagtgaatgcgacaaatgctttacccaacaatcca
cttttagtattcatcagaaaattcatacaggagagaagccttacaaatgc
agtgaatatgagaaatgctttactaataaagacagtctgagaattcatca
gagaattcatactggagagaagccttacaaacgtcatgaatgtgacaagt
gtttttaccaaaaataccatcttagtattcatcagagaattcatacagga
gagaaaccttacaaatgtagtcaatgtgacaaatgctttactgacaaagg
ctgtctgagaattcatcatagaattcatacagtagagaaaccttacaaat
agattgtatgtgataaatacaatactcacaatgtcagtcttagaaatcat
cagttatttcatacagtagagaatctttataaatgaagtaaatgagacaa
tcctttaccaagatatatcatcttaaaattcattagagaatacttacaga
agaaaaacttttcaaatacattgaaggtatgaatccttttcttttggcct
atttcctagaataacagttaatacttacaggctagaaacttaatgcatgc
attatatgaagaaatattcttgacttcatttcagttagacaaaacatcta
agaactttttaagggaaagtatttctgttggggaaaatgtggcatatgtt
ttattcacggtgtcctggcaacacacaaggcttcacactagagaattagt
atgattatgaaaatcctgtgaaattttcatgcaatgttcaaatcttaggt
aatgtcaactatttatgctgtgagaaactctgaaaaatgtgaaatgtaga
aagcttttcatgatacccttttacttgtcaccctcaatattacaagatga
agacaagtggaagtcagagagagtattgtgtaacactttcatgaggacag
aaaaaaatccagtttcaaaacggactatttaaggtatttaatacagccct
cgaaatattctaataaa
gaattcagtcgttggggtcatatctcatctcttgattagaactttcaggt
gatacttactcatcactgaattatttttaatgtttttatatttaaaaatc
cctacatagtcattaaaatatgtttaccttttccttttaattatccttta
agttttttttcttagtttgtgcccaattttattcttttcttttctttttt
ttttttttttttttttttttttttgggggggttttttgagacagggtttc
tctggatagccctggctgtcctggaactcactttggtgaccaggctggcc
tccaactcaaaaatctgcctgtttctgcctcccaagtggtgggattaaag
ggatgcaacaccatgccctgccattttctccttttcattttctcccttcc
tttattttattggggatttttttttgagaaagaatttctctgtgtagccc
tgaattccctggaactgactttgtggaccaggctggtatcaaactcagga
atatctgcctgcctcagtgccccaagtactgggaccaatgtgctcatgtt
gatatttgaagtgctatggtctcatgctgagcttgtgaaactaacccagc
acaatagccttgtaattgtcataaaataatagggacaggttgatacacat
gtctcatctaaaactgaacactaactaacatattattaagttatgagtct
ctgcatttaccattgtctacagcaaaaagaaacatccttgacgaaagatc
ctacaaatccacacgctagcacagactgattcactgactcacactcacac
atacacaaacccaccctatttagaatagcagtttgctatgaagaaataat
ctatcaaagttaataatacatggtccctgctaagtacgaaggatatttta
gccataggtttgacagtttactataggagaccaagaagatgaaatctcct
ccaatgagtatgctccaaatccagtcatgttagtcattccaaaagcctcc
atagccactattaatatctcgaggcgcatattgtttatagatcttttctt
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9682666_9683643
seq2: B6Ng01-247K22.b_185_1159

seq1  ACAATCCACTTTTAGTATTCATCAGAAAATTCATACAGGAGAGAAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCACTTTTAGTATTCATCAGAAAATTCATACAGGAGAGAAGCCTT  50

seq1  ACAAATGCAGTGAATATGAGAAATGCTTTACTAATAAAGACAGTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAGTGAATATGAGAAATGCTTTACTAATAAAGACAGTCTGAGA  100

seq1  ATTCATCAGAGAATTCATACTGGAGAGAAGCCTTACAAACGTCATGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACTGGAGAGAAGCCTTACAAACGTCATGAATG  150

seq1  TGACAAGTGTTTTTACCAAAAATACCATCTTAGTATTCATCAGAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGTTTTTACCAAAAATACCATCTTAGTATTCATCAGAGAATTC  200

seq1  ATACAGGAGAGAAACCTTACAAATGTAGTCAATGTGACAAATGCTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGAGAAACCTTACAAATGTAGTCAATGTGACAAATGCTTTACT  250

seq1  GACAAAGGCTGTCTGAGAATTCATCATAGAATTCATACAGTAGAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCTGTCTGAGAATTCATCATAGAATTCATACAGTAGAGAAACC  300

seq1  TTACAAATAGATTGTATGTGATAAATACAATACTCACAATGTCAGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATAGATTGTATGTGATAAATACAATACTCACAATGTCAGTCTTA  350

seq1  GAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGAAGTAAA  400

seq1  TGAGACAATCCTTTACCAAGATATATCATCTTAAAATTCATTAGAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATCCTTTACCAAGATATATCATCTTAAAATTCATTAGAGAATA  450

seq1  CTTACAGAAGAAAAACTTTTCAAATACATTGAAGGTATGAATCCTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAAGAAAAACTTTTCAAATACATTGAAGGTATGAATCCTTTTCT  500

seq1  TTTGGCCTATTTCCTAGAATAACAGTTAATACTTACAGGCTAGAAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTATTTCCTAGAATAACAGTTAATACTTACAGGCTAGAAACTTA  550

seq1  ATGCATGCATTATATGAAGAAATATTCTTGACTTCATTTCAGTTAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCATTATATGAAGAAATATTCTTGACTTCATTTCAGTTAGACAA  600

seq1  AACATCTAAGAACTTTTTAAGGGAAAGTATTTCTGTTGGGGAAAATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAAGAACTTTTTAAGGGAAAGTATTTCTGTTGGGGAAAATGTGG  650

seq1  CATATGTTTTATTCACGGTGTCCTGGCAACACACAAGGCTTCACACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTTATTCACGGTGTCCTGGCAACACACAAGGCTTCACACTAGA  700

seq1  GAATTAGTATGATTATGAAAATCCTGTGAAAATTTTCATGCAATGTTCAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTAGTATGATTATGAAAATCCTGTG-AAATTTTCATGCAATGTTCAA  749

seq1  ATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCTG-AAAATGTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCTGAAAAATGTG  799

seq1  AAATGTAGAAAGCTTTTCATGATACCCTTTTACTTGTTCACCCTCAAATA  849
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  AAATGTAGAAAGCTTTTCATGATACCCTTTTACTTG-TCACCCTC-AATA  847

seq1  TTACAAGATGAAGACAAGTTGGGAAGTCAGAAGAGAGTATTGTGTAACAC  899
      |||||||||||||||||||  ||||||||| |||||||||||||||||||
seq2  TTACAAGATGAAGACAAGT--GGAAGTCAG-AGAGAGTATTGTGTAACAC  894

seq1  TTTCATTGAGACAG-AAAAAATCCA-TTTCAAAAGGGAACTATTTAAGGT  947
      ||||||   ||||| |||||||||| |||||||| || ||||||||||||
seq2  TTTCATGAGGACAGAAAAAAATCCAGTTTCAAAACGG-ACTATTTAAGGT  943

seq1  ATTTAATACAACCCTCAAAATA-TCTAATAAA  978
      |||||||||| ||||| ||||| |||||||||
seq2  ATTTAATACAGCCCTCGAAATATTCTAATAAA  975

seq1: chr19_9730250_9731295
seq2: B6Ng01-247K22.g_67_1118 (reverse)

seq1  TGAAGAAAATATCTA-ATAAAATAT--GCCTGGAGATA-TAATAGTGGC-  45
      ||||||||| ||||| | | |||||  |||| |||||| |||||||||| 
seq2  TGAAGAAAAGATCTATAAACAATATGCGCCTCGAGATATTAATAGTGGCT  50

seq1  ATGGATG-TTTTGGAATAACCAACCATGACTGGATTTGGAGCATACTTCA  94
      ||||| | ||||||||| || || |||||||||||||||||||||| |||
seq2  ATGGAGGCTTTTGGAATGACTAA-CATGACTGGATTTGGAGCATAC-TCA  98

seq1  TAGGA-GAGAATTCATATTCTT-GTCTCCTATAGTAAACCTTGTCAAAAC  142
      | ||| |||| ||||| ||||| ||||||||||||||||  |||| ||||
seq2  TTGGAGGAGATTTCATCTTCTTGGTCTCCTATAGTAAAC--TGTC-AAAC  145

seq1  CTATGGCTAAATAATCCATCGTACCTAACAGGGACCATGTATTATT-ACT  191
      |||||||||||  |||| |||||| || |||||||||||||||||| |||
seq2  CTATGGCTAAAATATCCTTCGTACTTAGCAGGGACCATGTATTATTAACT  195

seq1  TTGATA-ATTA-TTCTTC-TAGCAAACTGC-CTTCTGAATAGTGTGTGTT  237
      |||||| |||| |||||| |||||||||||  |||| ||||| ||| |||
seq2  TTGATAGATTATTTCTTCATAGCAAACTGCTATTCTAAATAGGGTGGGTT  245

seq1  TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  287
      ||||||    |||||| ||||| ||  |||  |  || ||||   | |||
seq2  TGTGTA----TGTGTGAGTGTGAGTCAGTGAATCAGTCTGTGCTAGCGTG  291

seq1  TGTGTTTGTA-GATCTTT-GTCAATGAAGTTTCTTTTTGCTGTAGACAAT  335
      ||  |||||| ||||||| ||||| || ||||||||||||||||||||||
seq2  TGGATTTGTAGGATCTTTCGTCAAGGATGTTTCTTTTTGCTGTAGACAAT  341

seq1  GGTTAATGCAGAGACTCATAACTTAATAATATGTTAGTTAGTGTTCAGTC  385
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTAAATGCAGAGACTCATAACTTAATAATATGTTAGTTAGTGTTCAGTT  391

seq1  TTAGATGAGACATGTGTATCAACCTGTCCCTATTATTTTATGACAATTAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAGACATGTGTATCAACCTGTCCCTATTATTTTATGACAATTAC  441

seq1  AAGGCTATTGTGCTGGGTTAGTTTCACAAGCTCAGCATGAGACCATAGCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATTGTGCTGGGTTAGTTTCACAAGCTCAGCATGAGACCATAGCA  491

seq1  CTTCAAATATCAACATGAGCACATTGGTCCCAGTACTTGGGGCACTGAGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATATCAACATGAGCACATTGGTCCCAGTACTTGGGGCACTGAGG  541

seq1  CAGGCAGATATTCCTGAGTTTGATACCAGCCTGGTCCACAAAGTCAGTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATATTCCTGAGTTTGATACCAGCCTGGTCCACAAAGTCAGTTC  591

seq1  CAGGGAATTCAGGGCTACACAGAGAAACTCTGTCTCAAAAAAAAATCCCC  635
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CAGGGAATTCAGGGCTACACAGAGAAATTCTTTCTCAAAAAAAAATCCCC  641

seq1  AATAAAATAAAGGAAGAGAGAAAATGAAAAGGAGAAAATGGCAGGGCATG  685
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAGGAAGGGAGAAAATGAAAAGGAGAAAATGGCAGGGCATG  691

seq1  GTGTTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAAACAGGCAGATT  735
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GTGTTGCATCCCTTTAATCCCACCACTTGGGAGGCAGAAACAGGCAGATT  741

seq1  TTTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAT  785
      |||||||| |||||||||||||||  ||||||||||||||||||||||| 
seq2  TTTGAGTTGGAGGCCAGCCTGGTCACCAAAGTGAGTTCCAGGACAGCCAG  791

seq1  GGCTATACAGAGAAACCCTGTCTCAAAAAACACACACAAAAAAAAAAAAA  835
      |||||| |||||||||||||||||||||||| | | ||||||||||||||
seq2  GGCTATCCAGAGAAACCCTGTCTCAAAAAACCCCCCCAAAAAAAAAAAAA  841

seq1  AAAAAAAAAAAAAAAAAGAAAAGAAAAGAATAAAATTGGGCACAAACTAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGAAAAGAAAAGAATAAAATTGGGCACAAACTAA  891

seq1  GAAAAAAAACTTAAAGGATAATTAAAAGGAAAAGGTAAACATATTTTAAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACTTAAAGGATAATTAAAAGGAAAAGGTAAACATATTTTAAT  941

seq1  GACTATGTAGGGATTTTTAAATATAAAAACATTAAAAATAATTCAGTGAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTAGGGATTTTTAAATATAAAAACATTAAAAATAATTCAGTGAT  991

seq1  GAGTAAGTATCACCTGAAAGTTCTAATCAAGAGATGAGATATGACCCCAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTATCACCTGAAAGTTCTAATCAAGAGATGAGATATGACCCCAA  1041

seq1  CGACTGAATTC  1046
      |||||||||||
seq2  CGACTGAATTC  1052