BAC Information

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BAC

Clone NameB6Ng01-250N04
Chromosome19 (Build37)
Map Location 8,704,642 - 8,800,510
singlet/doubletdoublet
Overlap geneChrm1, Slc3a2, Snord22
Upstream geneHrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream geneWdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N04.bB6Ng01-250N04.g
ACCGA058260GA058261
length1,2051,190
definitionB6Ng01-250N04.b B6Ng01-250N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,799,284 - 8,800,510)(8,704,642 - 8,705,840)
sequence
gaattcttccctttctacgcacaaaaatgatccctcagacagttccttct
ggaacaaagtttcctcttttcccccagccagccccagtgggttcaccttt
tcaggctctggagctaggacaggaagtaggacgtgtgaacatttcttcat
ggggaaattatagttcagcatacttttcatctaagttttctcaccttatt
ttagcctggacttgaaaatgaagatatgcttcaactttcctacaaaatag
caaacaatttgggccattaatgcttaagcttcttttacaaaagcttatgc
tagtattaatactatgctagtattagcataaaaaatttcctacttgatcc
aaaatgagctcacaactcagaaaatacctttctccacagctatcagactg
gggcggtattcagttcatcagggtgagcaggaattcactaggtctaagta
ttatatattcaaccttatactacaaaaagcattactaagacatatacctg
gtacggctcctttgttctcagccagacacaccatctctgaaaaacaagac
agtcatcagcaatgttaaaaatcctgcaacagcttgttcctatctaaccc
atcattctgagaaaaatcagatttccaagtctcaacagcaatcatcagcc
gaacgagattctatgaaagtcatcatatatacacaaagtacgttctcagt
taggtccccccaccccagtccaatgctatgcacatacaccacaccacaca
ctggaatcactcacctgtaaacccacaagtatggcactgctaacagaacc
tggagaaaaataacaaaccttgaaaaggctggatataaggcccttgcccc
cacactaccctttggtttctcaggtgttcctgtgttttcattagcagtca
tagtgagctagtttgattcatcatagaaacagcaaacctagtgaacaaac
cccatccaaaataatctaactaaccctttgaatgcctgagatttgtcacc
aggaaacctgtgagagtaacaagtagttattttcacatcagacagataca
atctgtctgtcagcactactgcatcagaactctacatgctataatcacac
ctttcacggatttcagtgtcatcattcaatcaatctgacagttgagtttt
aggaactagcttaccatactggtcctctgaaatacaagtgtgaagcagcc
aaaaa
gaattcctagaactcagtaaaaagaactcaagcagcccaatccaaataca
gccaaaaatccataaacacgggctttgccatagaagatacaggaacaggc
aataagcacaaaaaatgatcaacctcattataattcaggaaaatgaatat
caaaccacagtgagatgctgggtcacacccatgcgaatagctaacacata
atactctggattctatgcagccatgtgctgccctgggcagccaccatggg
atgctgcaggctcctcaccaacacaaagactttcaccagatgtgacccct
tgactttggacttcctgctactccatgtgaccaaaatgcagccaaaaggc
tgagactcggctagtgagacctacccacactggactttgattcaggggac
agtgacttgaaaatggagcccaacagaatactcccctccccacctccaca
tgatgacaggtccacagctcaggtacagaccccagtgccttcactgggct
aatttgtgggttatactacgcaacctgaattttctccataacccccccaa
ctacccaatgggctattgataaatgtgttctctccttgaaaaataaattg
aggctgagcacaccaatgtgctgaaaagaagaaacagaaatccagttcta
gtggaaacctaggcttgcagcaacggcagcagtagtgggccaaagtaaac
ctttgctctttgtaagttgacgtgcctcaggtatttgtcacagtgagaaa
aagctaatatacagagttccaaatccgaataccagacagcttactcaaca
gaaaatcactttcttacagttctagaggctgaaagtccgttatcaaagag
tcagcaggtttaagcctcttcccttggctaccttcccatcgtgtcctcgc
atggctctcctacacacacacacacacacacacacacacacacacacctg
ctgcttctttttataaaaacatcagaacgtttagatttgggaccttactc
tttattatttgacaaattccacacatgcaaataaacacaatgccaagtcc
tcccccaactcccactcttcccagaataatccctgacaatgttccctctc
tctctcactcctcaactcagtagaagagacttgagtctggctgctgatct
ggtaccttcttcctcaatgaacattctcctcccagtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8799284_8800510
seq2: B6Ng01-250N04.b_45_1249 (reverse)

seq1  TTTTTTGCTGCTTACTATTTGTATTTCTAGAGGACACATTATGTTAAGGC  50
      ||||| |||||||   | ||||||||| ||||||| || |||| ||||  
seq2  TTTTTGGCTGCTTCACACTTGTATTTC-AGAGGAC-CAGTATGGTAAG--  46

seq1  CTTTGTTCTCTTAAAAACTCAACTGTCAGATGATTTGAAATGATGACACT  100
        | |||| ||  ||||||||||||||||||   ||| ||||||||||||
seq2  -CTAGTTC-CT--AAAACTCAACTGTCAGATTGATTG-AATGATGACACT  91

seq1  GAACACTCCGTG-AAGGTGTGAATTTATAGCATGTTAGAGTTCTGATGGC  149
      ||  | |||||| |||||||||  |||||||||| |||||||||||| ||
seq2  GA--AATCCGTGAAAGGTGTGA--TTATAGCATG-TAGAGTTCTGAT-GC  135

seq1  AGTTAGTGCTGACAGACAGATTGTAATTCTGTCCTGATGGTTGAAAATAA  199
      || ||||||||||||||||||||||  ||||| ||||||  |||||||||
seq2  AG-TAGTGCTGACAGACAGATTGTA--TCTGT-CTGATG--TGAAAATAA  179

seq1  CTACTTGTTACTCTTCCACAGGTTTTCCTGGTGACAAATCTCAGGCATTC  249
      ||||||||||||||  |||||| |||||||||||||||||||||||||||
seq2  CTACTTGTTACTCT--CACAGG-TTTCCTGGTGACAAATCTCAGGCATTC  226

seq1  AAA-GGTTAGTTAGATTATTTTGGATGGGGTTTGTTCACTAGGTTTGCTG  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTAGTTAGATTATTTTGGATGGGGTTTGTTCACTAGGTTTGCTG  276

seq1  TTTCTATGATGAATCAAACTAGCTCACTATGACTGCTAATGAAAACACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGATGAATCAAACTAGCTCACTATGACTGCTAATGAAAACACAG  326

seq1  GAACACCTGAGAAACCAAAGGGTAGTGTGGGGGCAAGGGCCTTATATCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTGAGAAACCAAAGGGTAGTGTGGGGGCAAGGGCCTTATATCCA  376

seq1  GCCTTTTCAAGGTTTGTTATTTTTCTCCAGGTTCTGTTAGCAGTGCCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCAAGGTTTGTTATTTTTCTCCAGGTTCTGTTAGCAGTGCCATA  426

seq1  CTTGTGGGTTTACAGGTGAGTGATTCCAGTGTGTGGTGTGGTGTATGTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGTTTACAGGTGAGTGATTCCAGTGTGTGGTGTGGTGTATGTGC  476

seq1  ATAGCATTGGACTGGGGTGGGGGGACCTAACTGAGAACGTACTTTGTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGGACTGGGGTGGGGGGACCTAACTGAGAACGTACTTTGTGTA  526

seq1  TATATGATGACTTTCATAGAATCTCGTTCGGCTGATGATTGCTGTTGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGACTTTCATAGAATCTCGTTCGGCTGATGATTGCTGTTGAGA  576

seq1  CTTGGAAATCTGATTTTTCTCAGAATGATGGGTTAGATAGGAACAAGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATCTGATTTTTCTCAGAATGATGGGTTAGATAGGAACAAGCTG  626

seq1  TTGCAGGATTTTTAACATTGCTGATGACTGTCTTGTTTTTCAGAGATGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGATTTTTAACATTGCTGATGACTGTCTTGTTTTTCAGAGATGGT  676

seq1  GTGTCTGGCTGAGAACAAAGGAGCCGTACCAGGTATATGTCTTAGTAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGCTGAGAACAAAGGAGCCGTACCAGGTATATGTCTTAGTAATG  726

seq1  CTTTTTGTAGTATAAGGTTGAATATATAATACTTAGACCTAGTGAATTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTAGTATAAGGTTGAATATATAATACTTAGACCTAGTGAATTCC  776

seq1  TGCTCACCCTGATGAACTGAATACCGCCCCAGTCTGATAGCTGTGGAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCCTGATGAACTGAATACCGCCCCAGTCTGATAGCTGTGGAGAA  826

seq1  AGGTATTTTCTGAGTTGTGAGCTCATTTTGGATCAAGTAGGAAATTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTCTGAGTTGTGAGCTCATTTTGGATCAAGTAGGAAATTTTTT  876

seq1  ATGCTAATACTAGCATAGTATTAATACTAGCATAAGCTTTTGTAAAAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATACTAGCATAGTATTAATACTAGCATAAGCTTTTGTAAAAGAA  926

seq1  GCTTAAGCATTAATGGCCCAAATTGTTTGCTATTTTGTAGGAAAGTTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGCATTAATGGCCCAAATTGTTTGCTATTTTGTAGGAAAGTTGAA  976

seq1  GCATATCTTCATTTTCAAGTCCAGGCTAAAATAAGGTGAGAAAACTTAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTTCATTTTCAAGTCCAGGCTAAAATAAGGTGAGAAAACTTAGA  1026

seq1  TGAAAAGTATGCTGAACTATAATTTCCCCATGAAGAAATGTTCACACGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTATGCTGAACTATAATTTCCCCATGAAGAAATGTTCACACGTC  1076

seq1  CTACTTCCTGTCCTAGCTCCAGAGCCTGAAAAGGTGAACCCACTGGGGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTGTCCTAGCTCCAGAGCCTGAAAAGGTGAACCCACTGGGGCT  1126

seq1  GGCTGGGGGAAAAGAGGAAACTTTGTTCCAGAAGGAACTGTCTGAGGGAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGAAAAGAGGAAACTTTGTTCCAGAAGGAACTGTCTGAGGGAT  1176

seq1  CATTTTTGTGCGTAGAAAGGGAAGAATTC  1227
      |||||||||||||||||||||||||||||
seq2  CATTTTTGTGCGTAGAAAGGGAAGAATTC  1205

seq1: chr19_8704642_8705840
seq2: B6Ng01-250N04.g_69_1258

seq1  GAATTCCTAGAACTCAGTAAAAAGAACTCAAGCAGCCCAATCCAAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAACTCAGTAAAAAGAACTCAAGCAGCCCAATCCAAATACA  50

seq1  GCCAAAAATCCATAAACACGGGCTTTGCCATAGAAGATACAGGAACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAATCCATAAACACGGGCTTTGCCATAGAAGATACAGGAACAGGC  100

seq1  AATAAGCACAAAAAATGATCAACCTCATTATAATTCAGGAAAATGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACAAAAAATGATCAACCTCATTATAATTCAGGAAAATGAATAT  150

seq1  CAAACCACAGTGAGATGCTGGGTCACACCCATGCGAATAGCTAACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACAGTGAGATGCTGGGTCACACCCATGCGAATAGCTAACACATA  200

seq1  ATACTCTGGATTCTATGCAGCCATGTGCTGCCCTGGGCAGCCACCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGGATTCTATGCAGCCATGTGCTGCCCTGGGCAGCCACCATGGG  250

seq1  ATGCTGCAGGCTCCTCACCAACACAAAGACTTTCACCAGATGTGACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGGCTCCTCACCAACACAAAGACTTTCACCAGATGTGACCCCT  300

seq1  TGACTTTGGACTTCCTGCTACTCCATGTGACCAAAATGCAGCCAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGACTTCCTGCTACTCCATGTGACCAAAATGCAGCCAAAAGGC  350

seq1  TGAGACTCGGCTAGTGAGACCTACCCACACTGGACTTTGATTCAGGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCGGCTAGTGAGACCTACCCACACTGGACTTTGATTCAGGGGAC  400

seq1  AGTGACTTGAAAATGGAGCCCAACAGAATACTCCCCTCCCCACCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGAAAATGGAGCCCAACAGAATACTCCCCTCCCCACCTCCACA  450

seq1  TGATGACAGGTCCACAGCTCAGGTACAGACCCCAGTGCCTTCACTGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGGTCCACAGCTCAGGTACAGACCCCAGTGCCTTCACTGGGCT  500

seq1  AATTTGTGGGTTATACTACGCAACCTGAATTTTCTCCATAACCCCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGGTTATACTACGCAACCTGAATTTTCTCCATAACCCCCCCAA  550

seq1  CTACCCAATGGGCTATTGATAAATGTGTTCTCTCCTTGAAAAATAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAATGGGCTATTGATAAATGTGTTCTCTCCTTGAAAAATAAATTG  600

seq1  AGGCTGAGCACACCAATGTGCTGAAAAGAAGAAACAGAAATCCAGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGCACACCAATGTGCTGAAAAGAAGAAACAGAAATCCAGTTCTA  650

seq1  GTGGAAACCTAGGCTTGCAGCAACGGCAGCAGTAGTGGGCCAAAGTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACCTAGGCTTGCAGCAACGGCAGCAGTAGTGGGCCAAAGTAAAC  700

seq1  CTTTGCTCTTTGTAAGTTGACGTGCCTCAGGTATTTGTCACAGTGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTTTGTAAGTTGACGTGCCTCAGGTATTTGTCACAGTGAGAAA  750

seq1  AAGCTAATATACAGAGTTCCAAATCCGAATACCAGACAGCTTACTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATATACAGAGTTCCAAATCCGAATACCAGACAGCTTACTCAACA  800

seq1  GAAAATCACTTTCTTACAGTTCTAGAGGCTGAAAGTCCGTTATCAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCACTTTCTTACAGTTCTAGAGGCTGAAAGTCCGTTATCAAAGAG  850

seq1  TCAGCAGGTTTAAGCCTCTTCCCTTGGCTACCTTCCCATCGTGTCCTCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGTTTAAGCCTCTTCCCTTGGCTACCTTCCCATCGTGTCCTCGC  900

seq1  ATGGCCTCTCCTACACACACACACACACACACACACACACACACACACCT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGG-CTCTCCTACACACACACACACACACACACACACACACACACACCT  949

seq1  GCTGCTTCTTTTTATAAAAACATCAG-ACGTTTAGATTT-GGACCTTACT  998
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GCTGCTTCTTTTTATAAAAACATCAGAACGTTTAGATTTGGGACCTTACT  999

seq1  CTTTATTATTTGAC-AATTCCACACATGCAAAT-AACAC-ATGCCAAGTT  1045
      |||||||||||||| |||||||||||||||||| ||||| |||||||| |
seq2  CTTTATTATTTGACAAATTCCACACATGCAAATAAACACAATGCCAAG-T  1048

seq1  CCTCCCCCAACTCCCACTCTTCCCAGA--TATCCCTGAC-ATGTTTCC-C  1091
      |||||||||||||||||||||||||||   ||||||||| ||||| || |
seq2  CCTCCCCCAACTCCCACTCTTCCCAGAATAATCCCTGACAATGTTCCCTC  1098

seq1  TCTCTCTCACTTCCTCAACTTCAGTAAGGACAGGAGACCTGGAGTCTGGC  1141
      |||||||||| |||||||| |||||    | | |||| || |||||||||
seq2  TCTCTCTCAC-TCCTCAAC-TCAGT----AGAAGAGA-CTTGAGTCTGGC  1141

seq1  TGCCTGAGTCCTGTGTCCTCTTCTCTCCTCCAATGGGAACAATCTCCTCC  1191
      || ||||   ||| || | ||||| |||| ||||  ||||| ||||||||
seq2  TG-CTGA--TCTG-GTAC-CTTCT-TCCT-CAAT--GAACATTCTCCTCC  1182

seq1  CAGTAACA  1199
      ||||||||
seq2  CAGTAACA  1190