BAC Information

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BAC

Clone NameB6Ng01-251C08
Chromosome19 (Build37)
Map Location 17,811,560 - 17,919,498
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251C08.bB6Ng01-251C08.g
ACCGA058495GA058496
length1,1571,003
definitionB6Ng01-251C08.b B6Ng01-251C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,918,320 - 17,919,498)(17,811,560 - 17,812,376)
sequence
gaattcctagaggagtcacataagtcattggacctgaagggtagcacttg
tcaagtttcatatgagaatccaattcccccctgtctttaatgcagtgttt
atttttgaggataataaaagggatcttataaatagcaatgaagatttaaa
aaaattaaaatatctgagccttcagctgggcatattccaccagtttttag
gaaaaacaactttattggtaagttattctcaagtgtaagataactgtccg
aaaatagaactttgctgctgttcttggtgtgtagactcgctgccataagt
ctcagctgaatgccttgtccaagaaacagctactgagaggtttggctctt
gaggataaatggttttattgtgaatctaagggcaatgggaataaagatgt
ctaaatgctatttgtgtatcactaaaaaactctgtgatgagggcatagta
aaacaaagaaacaagcaaataaacacacatagcaaacataacaacaacat
tgggcagtgagttaggactaactacaacctgactatgaaaaagacaagat
gcagtgatgtcacatgtgatgacagtgttctagacacacagttttgacag
tgataggatattagagttgcatgccatatgatgacatttcagcctaggat
gggcccacagtacaacagtttgctgaaaatgattgtcaccaagtgacatg
gtagcctctacaacaacatagcacagtgtattcgttcctccagtcttgga
tgctgctgacagaaggaggcaccatatttcagatgaagaaaagtaaagaa
cagacaattatgtgcacagatatctttccaatttaacaataaataactag
attacctgtttatgtatttcctgactatactttttattgttattttagat
tatttcttctatttgattaagaaaaagtctagtagctgggtgtggtggca
cacgcctttaatcccagcacttggggaggcagaggcaggcagatttctga
gtttgaggcagcctgtctacagagtgagttcaggacagccagggctatta
cagagaaacctgttctcgaaaacccaataaaaatataaaaagaggaagag
agagaaggtctagtgaactattgtcaacctggagatgactcagtggtaga
gccactg
gaattcttttctcacatgagaaaagaatccattttcaataaaaggaaaaa
aaaatgtttgctttaatcacagtacttgttattctaagatgatattgtgt
gtatttggcgagataatcctccagcactgattctagcatcaccaagaatt
ggattttcagaaggggggaaaagagatgtggatgtaaaattgatgtataa
tttgtaacaaataggaaatatctgcatcaactatgatatattttttgtta
attgaaaagtcctaaaactaactcaatagcaaccattccagtacattatc
atagtctctatgagctgacttggtgcttaagaatcaatggggatgagctt
agctgtaactcacagcactgggaatatggaatgtgaagagaccaccttct
gaagccaggcaggaacctcagtagagcaataggaacaccaacctactcac
aaaactttcaacctaaaatttatactgtctacaataaatgcagagacagg
agagggagcagagactgaggtaatgggcaataatcagcccaccttgaacc
catctcatgggcaagcaccaattcctgacactattaatgatactctgtta
tgcttgtagatggcagtctagcaaggctgttctctgaaaggctccaccaa
gcagctgacttagagggatgcagagacctacagctaaacagtggacagag
cttggggactcctatggaagagttgggggaaggatttctggccctataag
ggatagggacaccacaggaagtccaacagagttaactaaccaagacttat
tgggttctcagactctgaaccacaaaccaaagagcatatatgggctggag
ctggctcccaaccctgcacatatgtagtagatgttcagcttggtcttctt
gtgggtcttaaacaatcaaaaagctgttgcctgtccctgggatatgttct
ttctagctagactgtgttgtttgtacttcagtggaaatgtacctagcccc
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17918320_17919498
seq2: B6Ng01-251C08.b_46_1202 (reverse)

seq1  CAGT-GCTCTTAACCACTGAGTCATCTTTCCAGCTCTGACATATTGGTTT  49
      |||| |||||  ||||||||||||||  ||||| | ||||| || |   |
seq2  CAGTGGCTCT--ACCACTGAGTCATC--TCCAGGT-TGACA-ATAG---T  41

seq1  TCACTAGACTTTTTCTTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTT  99
      ||||||||| || ||| ||||| ||             ||||| | ||||
seq2  TCACTAGACCTTCTCTCTCTTCCTC-------------TTTTTATATTTT  78

seq1  TTTTGGTTTTTCGAGACAGGGTTTCTCTGT-ATAGCCCTGGCTGTCCTGG  148
      | |||| |||||||||   ||||||||||| ||||||||||||||||| |
seq2  TATTGGGTTTTCGAGAACAGGTTTCTCTGTAATAGCCCTGGCTGTCCT-G  127

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCT  198
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AACTCACTCTGTAGA-CAGGCT-GCCTCAAACTCAGAAATCTGCCTGCCT  175

seq1  CTGCCT-CCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCAGCTA  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCAGCTA  225

seq1  CTAGACTTTTTCTTAATCAAATAGAAGAAATAATCTAAAATAACAATAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTTTTCTTAATCAAATAGAAGAAATAATCTAAAATAACAATAAA  275

seq1  AAGTATAGTCAGGAAATACATAAACAGGTAATCTAGTTATTTATTGTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGTCAGGAAATACATAAACAGGTAATCTAGTTATTTATTGTTAA  325

seq1  ATTGGAAAGATATCTGTGCACATAATTGTCTGTTCTTTACTTTTCTTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGATATCTGTGCACATAATTGTCTGTTCTTTACTTTTCTTCAT  375

seq1  CTGAAATATGGTGCCTCCTTCTGTCAGCAGCATCCAAGACTGGAGGAACG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATGGTGCCTCCTTCTGTCAGCAGCATCCAAGACTGGAGGAACG  425

seq1  AATACACTGTGCTATGTTGTTGTAGAGGCTACCATGTCACTTGGTGACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTGTGCTATGTTGTTGTAGAGGCTACCATGTCACTTGGTGACAA  475

seq1  TCATTTTCAGCAAACTGTTGTACTGTGGGCCCATCCTAGGCTGAAATGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAGCAAACTGTTGTACTGTGGGCCCATCCTAGGCTGAAATGTC  525

seq1  ATCATATGGCATGCAACTCTAATATCCTATCACTGTCAAAACTGTGTGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGGCATGCAACTCTAATATCCTATCACTGTCAAAACTGTGTGTC  575

seq1  TAGAACACTGTCATCACATGTGACATCACTGCATCTTGTCTTTTTCATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACTGTCATCACATGTGACATCACTGCATCTTGTCTTTTTCATAG  625

seq1  TCAGGTTGTAGTTAGTCCTAACTCACTGCCCAATGTTGTTGTTATGTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGTAGTTAGTCCTAACTCACTGCCCAATGTTGTTGTTATGTTTG  675

seq1  CTATGTGTGTTTATTTGCTTGTTTCTTTGTTTTACTATGCCCTCATCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTGTTTATTTGCTTGTTTCTTTGTTTTACTATGCCCTCATCACA  725

seq1  GAGTTTTTTAGTGATACACAAATAGCATTTAGACATCTTTATTCCCATTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTAGTGATACACAAATAGCATTTAGACATCTTTATTCCCATTG  775

seq1  CCCTTAGATTCACAATAAAACCATTTATCCTCAAGAGCCAAACCTCTCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGATTCACAATAAAACCATTTATCCTCAAGAGCCAAACCTCTCAG  825

seq1  TAGCTGTTTCTTGGACAAGGCATTCAGCTGAGACTTATGGCAGCGAGTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTTCTTGGACAAGGCATTCAGCTGAGACTTATGGCAGCGAGTCT  875

seq1  ACACACCAAGAACAGCAGCAAAGTTCTATTTTCGGACAGTTATCTTACAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAAGAACAGCAGCAAAGTTCTATTTTCGGACAGTTATCTTACAC  925

seq1  TTGAGAATAACTTACCAATAAAGTTGTTTTTCCTAAAAACTGGTGGAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATAACTTACCAATAAAGTTGTTTTTCCTAAAAACTGGTGGAATA  975

seq1  TGCCCAGCTGAAGGCTCAGATATTTTAATTTTTTTAAATCTTCATTGCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTGAAGGCTCAGATATTTTAATTTTTTTAAATCTTCATTGCTA  1025

seq1  TTTATAAGATCCCTTTTATTATCCTCAAAAATAAACACTGCATTAAAGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGATCCCTTTTATTATCCTCAAAAATAAACACTGCATTAAAGAC  1075

seq1  AGGGGGGAATTGGATTCTCATATGAAACTTGACAAGTGCTACCCTTCAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAATTGGATTCTCATATGAAACTTGACAAGTGCTACCCTTCAGG  1125

seq1  TCCAATGACTTATGTGACTCCTCTAGGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  TCCAATGACTTATGTGACTCCTCTAGGAATTC  1157

seq1: chr19_17811560_17812376
seq2: B6Ng01-251C08.g_69_885

seq1  GAATTCTTTTCTCACATGAGAAAAGAATCCATTTTCAATAAAAGGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCACATGAGAAAAGAATCCATTTTCAATAAAAGGAAAAA  50

seq1  AAAATGTTTGCTTTAATCACAGTACTTGTTATTCTAAGATGATATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTGCTTTAATCACAGTACTTGTTATTCTAAGATGATATTGTGT  100

seq1  GTATTTGGCGAGATAATCCTCCAGCACTGATTCTAGCATCACCAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGCGAGATAATCCTCCAGCACTGATTCTAGCATCACCAAGAATT  150

seq1  GGATTTTCAGAAGGGGGGAAAAGAGATGTGGATGTAAAATTGATGTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCAGAAGGGGGGAAAAGAGATGTGGATGTAAAATTGATGTATAA  200

seq1  TTTGTAACAAATAGGAAATATCTGCATCAACTATGATATATTTTTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACAAATAGGAAATATCTGCATCAACTATGATATATTTTTTGTTA  250

seq1  ATTGAAAAGTCCTAAAACTAACTCAATAGCAACCATTCCAGTACATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGTCCTAAAACTAACTCAATAGCAACCATTCCAGTACATTATC  300

seq1  ATAGTCTCTATGAGCTGACTTGGTGCTTAAGAATCAATGGGGATGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCTATGAGCTGACTTGGTGCTTAAGAATCAATGGGGATGAGCTT  350

seq1  AGCTGTAACTCACAGCACTGGGAATATGGAATGTGAAGAGACCACCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAACTCACAGCACTGGGAATATGGAATGTGAAGAGACCACCTTCT  400

seq1  GAAGCCAGGCAGGAACCTCAGTAGAGCAATAGGAACACCAACCTACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGCAGGAACCTCAGTAGAGCAATAGGAACACCAACCTACTCAC  450

seq1  AAAACTTTCAACCTAAAATTTATACTGTCTACAATAAATGCAGAGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTCAACCTAAAATTTATACTGTCTACAATAAATGCAGAGACAGG  500

seq1  AGAGGGAGCAGAGACTGAGGTAATGGGCAATAATCAGCCCACCTTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCAGAGACTGAGGTAATGGGCAATAATCAGCCCACCTTGAACC  550

seq1  CATCTCATGGGCAAGCACCAATTCCTGACACTATTAATGATACTCTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGGGCAAGCACCAATTCCTGACACTATTAATGATACTCTGTTA  600

seq1  TGCTTGTAGATGGCAGTCTAGCAAGGCTGTTCTCTGAAAGGCTCCACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAGATGGCAGTCTAGCAAGGCTGTTCTCTGAAAGGCTCCACCAA  650

seq1  GCAGCTGACTTAGAGGGATGCAGAGACCTACAGCTAAACAGTGGACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGACTTAGAGGGATGCAGAGACCTACAGCTAAACAGTGGACAGAG  700

seq1  CTTGGGGACTCCTATGGAAGAGTTGGGGGAAGGATTTCTGGCCCTATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGACTCCTATGGAAGAGTTGGGGGAAGGATTTCTGGCCCTATAAG  750

seq1  GGATAGGGACACCACAGGAAGTCCAACAGAGTTAACTAACCAAGACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGGACACCACAGGAAGTCCAACAGAGTTAACTAACCAAGACTTAT  800

seq1  TGGGTTCTCAGACTCTG  817
      |||||||||||||||||
seq2  TGGGTTCTCAGACTCTG  817