BAC Information

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BAC

Clone NameB6Ng01-251P23
Chromosome19 (Build37)
Map Location 17,251,337 - 17,414,641
singlet/doubletdoublet
Overlap geneA230083H22Rik, Gcnt1
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneRfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251P23.bB6Ng01-251P23.g
ACCGA059114GA059115
length1921,122
definitionB6Ng01-251P23.b B6Ng01-251P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,414,450 - 17,414,641)(17,251,337 - 17,252,449)
sequence
acagacatcctcctgcctcggcctcttctgtgctgggattaaaggtaaat
gtgggcccagcagccattcctcattttataggtaagggagcctggaggag
cctggggcagagcagagttacaaactgcagcctgcttctcaggtgtgcat
gtttagtaaggatttagtgtgtgtgtgtgtgtgtgtgtgtgt

gaattcacatgatctaaagttactgggagttgataaaaaccaaaaccaaa
accaaaacaacaacaaaccaaagacacctctaagcatgtcatgtccctgg
cagccttgaaggtacatcccatctctgacaacatgtgatgccaatcaacc
caaaatcagaaactgtaaaagaatttagagtgctccagagaagctcagat
ggtacagggggactgggaggaggaagctgcagacgacggaccttctaaat
gtaacatgagaaataagccggctgacataggaaagttgccatcacattag
tgttcctattagcaggccatgcatgacagacagctagatctaagtccaac
tgaaatgctcctctgccattttaggacagttgaggctgtactcaccgtag
gatgttagggaggggcatttttggtcttggctcaatttaaaagttcacgt
tcctgtgcccagttcattgtcttgaccagtgtgataacaggtgaacattc
tacattgctatcgactctgttttgatatgctcattaaatgttactgtttt
cgtgattattttttctaaaggtatagaagaaagactgcccctgccccgta
ccttaatatgcccactaatgtgtacttccagcacacaccgctcaagagtt
tctggattgttttgttgcactttgtgtggtggtaggatggagccgagggc
accactcacagtaggcgatctgtctaccgctgagcccagtgccaaagaac
tcaacagagatgcttcaaattcaggctataagatcaatataatccaaata
gggcttgcaagtgaaaagggatgctaggagtcagaatggttggatccaga
gataaagagcaaatattttttcctagctcataatggctatctccctttgt
gcggtttgaataagcttgcacaaaaggactgtgcaactctgattctatcc
actaaagctcatgggcaaagagaggatgcagctgcttctgtcagccttag
catgggtcattcgttggagcattataaacagtaatggtggggtgatatgc
cggcgattttgcttggtcaattcaataatctaacctagggctacttaagc
tttaccgcaggacataaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17414450_17414641
seq2: B6Ng01-251P23.b_51_242 (reverse)

seq1  ACACACACACACACACACACACACACTAAATCCTTACTAAACATGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACTAAATCCTTACTAAACATGCACAC  50

seq1  CTGAGAAGCAGGCTGCAGTTTGTAACTCTGCTCTGCCCCAGGCTCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCAGGCTGCAGTTTGTAACTCTGCTCTGCCCCAGGCTCCTCCA  100

seq1  GGCTCCCTTACCTATAAAATGAGGAATGGCTGCTGGGCCCACATTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTTACCTATAAAATGAGGAATGGCTGCTGGGCCCACATTTACCT  150

seq1  TTAATCCCAGCACAGAAGAGGCCGAGGCAGGAGGATGTCTGT  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACAGAAGAGGCCGAGGCAGGAGGATGTCTGT  192


seq1: chr19_17251337_17252449
seq2: B6Ng01-251P23.g_68_1189

seq1  GAATTCACATGATCTAAAGTTACTGGGAGTTGATAAAAACCAAAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCTAAAGTTACTGGGAGTTGATAAAAACCAAAACCAAA  50

seq1  ACCAAAACAACAACAAACCAAAGACACCTCTAAGCATGTCATGTCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACAACAACAAACCAAAGACACCTCTAAGCATGTCATGTCCCTGG  100

seq1  CAGCCTTGAAGGTACATCCCATCTCTGACAACATGTGATGCCAATCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGAAGGTACATCCCATCTCTGACAACATGTGATGCCAATCAACC  150

seq1  CAAAATCAGAAACTGTAAAAGAATTTAGAGTGCTCCAGAGAAGCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGAAACTGTAAAAGAATTTAGAGTGCTCCAGAGAAGCTCAGAT  200

seq1  GGTACAGGGGGACTGGGAGGAGGAAGCTGCAGACGACGGACCTTCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGGGGACTGGGAGGAGGAAGCTGCAGACGACGGACCTTCTAAAT  250

seq1  GTAACATGAGAAATAAGCCGGCTGACATAGGAAAGTTGCCATCACATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATGAGAAATAAGCCGGCTGACATAGGAAAGTTGCCATCACATTAG  300

seq1  TGTTCCTATTAGCAGGCCATGCATGACAGACAGCTAGATCTAAGTCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATTAGCAGGCCATGCATGACAGACAGCTAGATCTAAGTCCAAC  350

seq1  TGAAATGCTCCTCTGCCATTTTAGGACAGTTGAGGCTGTACTCACCGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTCCTCTGCCATTTTAGGACAGTTGAGGCTGTACTCACCGTAG  400

seq1  GATGTTAGGGAGGGGCATTTTTGGTCTTGGCTCAATTTAAAAGTTCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGGAGGGGCATTTTTGGTCTTGGCTCAATTTAAAAGTTCACGT  450

seq1  TCCTGTGCCCAGTTCATTGTCTTGACCAGTGTGATAACAGGTGAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCCCAGTTCATTGTCTTGACCAGTGTGATAACAGGTGAACATTC  500

seq1  TACATTGCTATCGACTCTGTTTTGATATGCTCATTAAATGTTACTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCTATCGACTCTGTTTTGATATGCTCATTAAATGTTACTGTTTT  550

seq1  CGTGATTATTTTTTCTAAAGGTATAGAAGAAAGACTGCCCCTGCCCCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTATTTTTTCTAAAGGTATAGAAGAAAGACTGCCCCTGCCCCGTA  600

seq1  CCTTAATATGCCCACTAATGTGTACTTCCAGCACACACCGCTCAAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATATGCCCACTAATGTGTACTTCCAGCACACACCGCTCAAGAGTT  650

seq1  TCTGGATTGTTTTGTTGCACTTTGTGTGGTGGTAGGATGGAGCCGAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGTTTTGTTGCACTTTGTGTGGTGGTAGGATGGAGCCGAGGGC  700

seq1  ACCACTCACAGTAGGCGATCTGTCTACCGCTGAGCCCAGTGCCAAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCACAGTAGGCGATCTGTCTACCGCTGAGCCCAGTGCCAAAGAAC  750

seq1  TCAACAGAGATGCTTCAAATTCAGGCTATAAGATCAATATAATCCAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAGATGCTTCAAATTCAGGCTATAAGATCAATATAATCCAAATA  800

seq1  GGGCTTGCAAGTGAAAAGGGATGCTAGGAGTCAGAATGGTTGGATCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCAAGTGAAAAGGGATGCTAGGAGTCAGAATGGTTGGATCCAGA  850

seq1  GATAAAGAGCAAATATTTTTTCCTAGCTCATAATGGCTATCTCCCTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAGCAAATATTTTTTCCTAGCTCATAATGGCTATCTCCCTTTGT  900

seq1  GCGGTTTGAATAAGCTTGCACAAAAAGGACTTGTGCAACTCTGATTCTAT  950
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GCGGTTTGAATAAGCTTGCAC-AAAAGGAC-TGTGCAACTCTGATTCTAT  948

seq1  CCACTAAAAGGCTCATGGGCAAAGAGAGGATGCAAGCTGCTTCTGTCAGC  1000
      ||||||||  ||||||||||||||||||||||| ||||||||||||||||
seq2  CCACTAAA--GCTCATGGGCAAAGAGAGGATGC-AGCTGCTTCTGTCAGC  995

seq1  CTTAGCATGGGTCA-TCGT--GAGCATTATAAACAGTAAT-GTTGGGTGA  1046
      |||||||||||||| ||||  ||||||||||||||||||| || ||||||
seq2  CTTAGCATGGGTCATTCGTTGGAGCATTATAAACAGTAATGGTGGGGTGA  1045

seq1  TATG-CGGTGA-TTTGCTTGGTAAATTCAAATAATCTAACTAAGG--TAC  1092
      |||| ||| || |||||||||| ||||| |||||||||||  |||  |||
seq2  TATGCCGGCGATTTTGCTTGGTCAATTC-AATAATCTAACCTAGGGCTAC  1094

seq1  TTAAGGTTT-------TACAGAAAGAAA  1113
      ||||| |||        ||| |||||||
seq2  TTAAGCTTTACCGCAGGACATAAAGAAA  1122


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