BAC Information

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BAC

Clone NameB6Ng01-252M09
Chromosome19 (Build37)
Map Location 20,502,541 - 20,612,153
singlet/doubletdoublet
Overlap geneE030003E18Rik
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneEG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252M09.bB6Ng01-252M09.g
ACCGA059681GA059682
length1,1701,180
definitionB6Ng01-252M09.b B6Ng01-252M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,610,967 - 20,612,153)(20,502,541 - 20,503,650)
sequence
gaattctttggaagttaatgattaccacatagagaaagtaattctctgaa
tggcagtttaattatgaattccttccaccttatccctctccagttgcctt
ctctccaccaccttctttccttccttccattttactctggttccctccct
ccctttccatttcctcttttaatctctcatctggtgatgatcaatcaggg
gaacaacaggctagagcaatagctcacctgttaacagcatttcctgcttt
tgcacagaacctgagggtttctattcccacatcagatgctcaatagacac
ctgagcctccaggtccatgtgatctgataccctcctccttcttgcaacca
catgcacatgtggggctcgcagtaggacacacataaataaaaataaaaaa
taagtgattacttgtgttttatacatgttttgcaggagcagacattctaa
ctaaatcatcagtggggagagatttcattgagtgtgggtagagacatgaa
catctgggctagagtctgaaggaaatggtgagaattttaactgtcacaga
tggaactcttgagcgcatacataagacattaactgagaatttcttggact
agaaaaataaattggaattaaatatattctttcttaacaaatatcaaatg
taaaatcttaaagccatctgtgattttttttctgaaaaatttgaaagttt
aagttaggtatatcaaaataaaaaaaatgtctagcatattatcctgttgc
caggcaacactgataatctgagatctcacaagcaggcaccagaaagatgt
tgaatgcaatgaatgtatccccaaagcgagtgagtcagcaatagttattt
caagagctggcctgacagagccacgaaaatccccagtgagcatgaaacta
tcttcagactttgttgcttatctttggcaatgcaacactcatacctcctc
tccgtggtctccaaatgagatatagtcagagccaagatgtattctgttcc
ctctatcgagtctaacagcgaagcagcgcatcatttcagtggtgcagaga
ctggaggaccacacccttatccccagggcagaagcgtgtctatgttcttc
cagctggaaacaggtctcctctggatccttcgattaaggaacgaggagaa
ggaaagcatgcctgtgttcc

gaattctttaccatttaagttgggtcacatgatgtttctaggagctgtct
tgtgacagggcaatgtgatattttgctgaaaacaaacaattgtgagggta
tgtgatgtttagaaagaatataaatggaactccttgggcaatcagcgaga
ggatgctcttccatttgctgatattaagtggtctttactggtcttcaatg
gtctttcctgttctttcatggtccttaattcatagagagaaatgtgtcaa
agaaatttccatggtattctgactgattttggccacttccactgactttt
gccaattgggggaagccttactatttctgttggatcgagccaccactact
gattggtgtttggtgtttgttattgaagtgggctgagggtatcctgataa
aaaaaggggaattgcccctaggggactacaattaaatatgtttacaaccc
ccttttcctattaaccttctttctcccctacccctgatcagtgggctaga
cgggaggttgaagcatttaagaaccctaaataatgtaggttttgaaaaat
ctaagcatacaaggaccaatgcctcagacacctgtgaatttccccagggg
gaggctcagaggggtggcaaagcctccatctggtcctaatgcaaaagtta
gcaatgtgagcaaaagccagcgactgctacttccttctgccagatgattc
cagcctgaaactgctgcttacagagaccgactgtccagtaactaacccct
ccctctgcgctgtacataattaactctcctagcttccaggttgttgagat
agttggtgcccgaatatgcacattccacctgacccctgcttttgtgtatg
tgtttctgtccactctccatctctcataccccagttaggtttccaggact
catcccacagtggcacaggaaaatagcaccaccaatgctgggaattgaac
ccgaatcctctggaaagggcagcaaaggctcttcaacactgacctatccc
tcttagtccacaaagcctttttgtgtttattgttgctgctgctgtgtttg
ctttgataacagggttttcttcttatagcctccagctagcctgaacctca
caggaaaatccaatccgctcaaccttcctcaatggcctggataaaagtca
tgcaccaaacctgtcaacttcccaaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20610967_20612153
seq2: B6Ng01-252M09.b_48_1217 (reverse)

seq1  GGAACACAGGCATGCTTTCTCTTCCTCCTCCTGCTCCTTAATCTGAAGGG  50
      ||||||||||||||||||| ||| ||||||  | ||||||||| ||| ||
seq2  GGAACACAGGCATGCTTTC-CTT-CTCCTC--GTTCCTTAATC-GAA-GG  44

seq1  ATCCAGAGGAGACACCTGTTTCCCAGCTGGGAG-ACATAGACCACGGCCT  99
      |||||||||||  |||||||| |||||||| || ||||||| ||||  ||
seq2  ATCCAGAGGAG--ACCTGTTT-CCAGCTGGAAGAACATAGA-CACG--CT  88

seq1  TCTGCCCTGGGGATAAGGGTGTGGTCCTCCAGTCTCTGCA-CACTGAAAT  148
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGCCCTGGGGATAAGGGTGTGGTCCTCCAGTCTCTGCACCACTGAAAT  138

seq1  GATGCGCTGGCTTCGCTGTTAGAACCTCGGTAGGAGGGAACAGAATACAT  198
      |||||||| ||||||||||||||  |||| || |||||||||||||||||
seq2  GATGCGCT-GCTTCGCTGTTAGA--CTCGATA-GAGGGAACAGAATACAT  184

seq1  CTTGGCTCCTTGACTATATCTCATTTGGAGACCACGGAGAGGAGGTATGA  248
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTC--TGACTATATCTCATTTGGAGACCACGGAGAGGAGGTATGA  232

seq1  GTGTTTGCATTGCCAAAGATAAGCAACAAAGTCTGAAGATAGTTTCATGC  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-TTGCATTGCCAAAGATAAGCAACAAAGTCTGAAGATAGTTTCATGC  281

seq1  TCACTGGGGATTTTCGTGGCTCTGTCAGGCCAGCTCTTGAAATAACTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGGATTTTCGTGGCTCTGTCAGGCCAGCTCTTGAAATAACTATT  331

seq1  GCTGACTCACTCGCTTTGGGGATACATTCATTGCATTCAACATCTTTCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCACTCGCTTTGGGGATACATTCATTGCATTCAACATCTTTCTG  381

seq1  GTGCCTGCTTGTGAGATCTCAGATTATCAGTGTTGCCTGGCAACAGGATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCTTGTGAGATCTCAGATTATCAGTGTTGCCTGGCAACAGGATA  431

seq1  ATATGCTAGACATTTTTTTTATTTTGATATACCTAACTTAAACTTTCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAGACATTTTTTTTATTTTGATATACCTAACTTAAACTTTCAAA  481

seq1  TTTTTCAGAAAAAAAATCACAGATGGCTTTAAGATTTTACATTTGATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAAAAAAATCACAGATGGCTTTAAGATTTTACATTTGATATT  531

seq1  TGTTAAGAAAGAATATATTTAATTCCAATTTATTTTTCTAGTCCAAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAAAGAATATATTTAATTCCAATTTATTTTTCTAGTCCAAGAAA  581

seq1  TTCTCAGTTAATGTCTTATGTATGCGCTCAAGAGTTCCATCTGTGACAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTAATGTCTTATGTATGCGCTCAAGAGTTCCATCTGTGACAGT  631

seq1  TAAAATTCTCACCATTTCCTTCAGACTCTAGCCCAGATGTTCATGTCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTCACCATTTCCTTCAGACTCTAGCCCAGATGTTCATGTCTCT  681

seq1  ACCCACACTCAATGAAATCTCTCCCCACTGATGATTTAGTTAGAATGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACTCAATGAAATCTCTCCCCACTGATGATTTAGTTAGAATGTCT  731

seq1  GCTCCTGCAAAACATGTATAAAACACAAGTAATCACTTATTTTTTATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCAAAACATGTATAAAACACAAGTAATCACTTATTTTTTATTTT  781

seq1  TATTTATGTGTGTCCTACTGCGAGCCCCACATGTGCATGTGGTTGCAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTGTGTCCTACTGCGAGCCCCACATGTGCATGTGGTTGCAAGA  831

seq1  AGGAGGAGGGTATCAGATCACATGGACCTGGAGGCTCAGGTGTCTATTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGTATCAGATCACATGGACCTGGAGGCTCAGGTGTCTATTGA  881

seq1  GCATCTGATGTGGGAATAGAAACCCTCAGGTTCTGTGCAAAAGCAGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGATGTGGGAATAGAAACCCTCAGGTTCTGTGCAAAAGCAGGAAA  931

seq1  TGCTGTTAACAGGTGAGCTATTGCTCTAGCCTGTTGTTCCCCTGATTGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTAACAGGTGAGCTATTGCTCTAGCCTGTTGTTCCCCTGATTGAT  981

seq1  CATCACCAGATGAGAGATTAAAAGAGGAAATGGAAAGGGAGGGAGGGAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGATGAGAGATTAAAAGAGGAAATGGAAAGGGAGGGAGGGAAC  1031

seq1  CAGAGTAAAATGGAAGGAAGGAAAGAAGGTGGTGGAGAGAAGGCAACTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAAATGGAAGGAAGGAAAGAAGGTGGTGGAGAGAAGGCAACTGG  1081

seq1  AGAGGGATAAGGTGGAAGGAATTCATAATTAAACTGCCATTCAGAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATAAGGTGGAAGGAATTCATAATTAAACTGCCATTCAGAGAATT  1131

seq1  ACTTTCTCTATGTGGTAATCATTAACTTCCAAAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTATGTGGTAATCATTAACTTCCAAAGAATTC  1170


seq1: chr19_20502541_20503650
seq2: B6Ng01-252M09.g_128_1244

seq1  TGTGATATTTTGCTGAAAACAAACAATTGTGAGGGTATGTGATGTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATTTTGCTGAAAACAAACAATTGTGAGGGTATGTGATGTTTAGA  50

seq1  AAGAATATAAATGGAACTCCTTGGGCAATCAGCGAGAGGATGCTCTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAAATGGAACTCCTTGGGCAATCAGCGAGAGGATGCTCTTCCA  100

seq1  TTTGCTGATATTAAGTGGTCTTTACTGGTCTTCAATGGTCTTTCCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGATATTAAGTGGTCTTTACTGGTCTTCAATGGTCTTTCCTGTTC  150

seq1  TTTCATGGTCCTTAATTCATAGAGAGAAATGTGTCAAAGAAATTTCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTCCTTAATTCATAGAGAGAAATGTGTCAAAGAAATTTCCATG  200

seq1  GTATTCTGACTGATTTTGGCCACTTCCACTGACTTTTGCCAATTGGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGACTGATTTTGGCCACTTCCACTGACTTTTGCCAATTGGGGGA  250

seq1  AGCCTTACTATTTCTGTTGGATCGAGCCACCACTACTGATTGGTGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACTATTTCTGTTGGATCGAGCCACCACTACTGATTGGTGTTTGG  300

seq1  TGTTTGTTATTGAAGTGGGCTGAGGGTATCCTGATAAAAAAAGGGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTATTGAAGTGGGCTGAGGGTATCCTGATAAAAAAAGGGGAATT  350

seq1  GCCCCTAGGGGACTACAATTAAATATGTTTACAACCCCCTTTTCCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAGGGGACTACAATTAAATATGTTTACAACCCCCTTTTCCTATTA  400

seq1  ACCTTCTTTCTCCCCTACCCCTGATCAGTGGGCTAGACGGGAGGTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTCTCCCCTACCCCTGATCAGTGGGCTAGACGGGAGGTTGAAG  450

seq1  CATTTAAGAACCCTAAATAATGTAGGTTTTGAAAAATCTAAGCATACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGAACCCTAAATAATGTAGGTTTTGAAAAATCTAAGCATACAAG  500

seq1  GACCAATGCCTCAGACACCTGTGAATTTCCCCAGGGGGAGGCTCAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCCTCAGACACCTGTGAATTTCCCCAGGGGGAGGCTCAGAGGG  550

seq1  GTGGCAAAGCCTCCATCTGGTCCTAATGCAAAAGTTAGCAATGTGAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAGCCTCCATCTGGTCCTAATGCAAAAGTTAGCAATGTGAGCAA  600

seq1  AAGCCAGCGACTGCTACTTCCTTCTGCCAGATGATTCCAGCCTGAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCGACTGCTACTTCCTTCTGCCAGATGATTCCAGCCTGAAACTG  650

seq1  CTGCTTACAGAGACCGACTGTCCAGTAACTAACCCCTCCCTCTGCGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACAGAGACCGACTGTCCAGTAACTAACCCCTCCCTCTGCGCTGT  700

seq1  ACATAATTAACTCTCCTAGCTTCCAGGTTGTTGAGATAGTTGGTGCCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTAACTCTCCTAGCTTCCAGGTTGTTGAGATAGTTGGTGCCCGA  750

seq1  ATATGCACATTCCACCTGACCCCTGCTTTTGTGTATGTGTTTCTGTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATTCCACCTGACCCCTGCTTTTGTGTATGTGTTTCTGTCCAC  800

seq1  TCTCCATCTCTCATACCCCAGTTAGGTTTCCAGGACTCATCCCACAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTCTCATACCCCAGTTAGGTTTCCAGGACTCATCCCACAGTGG  850

seq1  CACAGG-ATATAGCACCACCAATGCTGGGAATTGAACCCGAATCCTCTGG  899
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAAATAGCACCACCAATGCTGGGAATTGAACCCGAATCCTCTGG  900

seq1  -AAGGGCAGCAAAGGCTCTTCAACACTGACCTATCCCTC-TAGTCCACAA  947
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGGGCAGCAAAGGCTCTTCAACACTGACCTATCCCTCTTAGTCCACAA  950

seq1  AGCCTTTTTGTTGTTTATTGTTGCTGCTGCTGTTGTTTTGCTTTGGATAC  997
      |||||||||| ||||||||||||||||||||||   |||||||||   ||
seq2  AGCCTTTTTG-TGTTTATTGTTGCTGCTGCTGT--GTTTGCTTTGATAAC  997

seq1  AGGG-TTTCTCTTTATAG-CTCCAGCTAGCCTTGAACTCACAG--AAATC  1043
      |||| |||||  |||||| |||||||||||||  | |||||||  |||||
seq2  AGGGTTTTCTTCTTATAGCCTCCAGCTAGCCTGAACCTCACAGGAAAATC  1047

seq1  C-ATCCGCTTCAACCT--CTCAAATGCTGGGAT-AAAGTCATGCACCAAC  1089
      | |||||| |||||||  |||||  ||  |||| ||||||||||||||| 
seq2  CAATCCGC-TCAACCTTCCTCAATGGCCTGGATAAAAGTCATGCACCAAA  1096

seq1  ACTGCCCATTTCCCAAAAGCC  1110
       ||| | | ||||||||||||
seq2  CCTGTCAACTTCCCAAAAGCC  1117


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