BAC Information

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BAC

Clone NameB6Ng01-253B13
Chromosome19 (Build37)
Map Location 45,612,310 - 45,750,704
singlet/doubletdoublet
Overlap genePoll, 5330431N19Rik, Fbxw4
Upstream geneSec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253B13.bB6Ng01-253B13.g
ACCGA059922GA059923
length1,1161,123
definitionB6Ng01-253B13.b B6Ng01-253B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,749,512 - 45,750,704)(45,612,310 - 45,613,453)
sequence
gaattcaaaaacattctttggggagatcaaggatggcaggctttgaagcc
tggagggccggcgaggctcagagcacccggccgcgagccccacacccgag
cgagcggccgcactcttgcacttgctggggaaagcatttaaatgggaaca
atgtcaaatttcacagctatcttatgtccagtgaccttacgggaccccga
gggaaagacagatcgaaaatgattgttctcgacaagttcctcaaagcgaa
gaagtcaaataggcaaaacccttcagaaacgacgtctgcggaatgaaaaa
aagaaaactccgctcctaaaactgcggcttgttgtccgccctgcccagcg
ccagcccgagccttgggcgcttgctcgcctgtttgtttatttatgtattt
atttgttcgtccaccggctctgcacaagactcgcggtgtggctgctcttt
atctaatacacacagagatcaggtttcatctcaacagcccaagaacttgg
gaggaaaaagtttactgtgggggaagaaacaggaggtaacaactattttg
aaatatttaatcaatttgaaatagctttctctcttgttgaaagaaaatga
gacaggctagagtctgaggggaaaaaaaaaacaaaaaccagtctactagc
taagggaaagacgactaaaggacaatttaggagaacaaagatgagctctc
ggacctctgtctgtattttagacaagaatttcaatgacacttcatgtcct
ctaactttgacttaagtgaaccatcttagcttaatggctccccccccccc
cttaaaagaaaagaagtcttagagaagggactaaaagtccctttcatcac
aacccaggagggtcacgcccctttcccaggaccagcctctaccatgagtt
tgacgtgcatatagccctatttttgttctttcatttccattgcgatcctt
aaatagctatgatagcttagtgataactcataaaagggacatcatgttgt
agagtgtacactctgctctaacgtattttgctattattttcactcagcat
atgtttgacactaatccatatagatagttcatcccccctccctttctctt
ccccccctctcttctt
gaattcagagctcccctgtgattcatggccttctgcccaaggcagggtcc
tccactgccccttcacacacacaaacacacacacacacacacacacacac
acacacacacacacacacatgcatacacacacatacacacgcacatggcc
catccagtcagattccccaggcccaaggctaaggtcagtgagcaatccag
tgatcaagtgagagcgaactgtactccttactggaagccataggctgttt
ggaggccccgttgtgtttgaggaacaaacacaagcctcccaaaagtccag
gaagctggtagggtcacaaactcagctctgggttaaacccacagcttatc
atttactgggtgtgtgacattgggggagttccctgacctcagtttttcac
ttataaaatggggctaagaagggaacccttcacaggcaaacacatgtgca
ttgtccagtccaacaatttaaaaaaaaaaattctacccagaggcctggaa
tggtggtgcatgcctctaaggagacagaggcaggtggatctctgagtctg
agtcagcctgggctatatagtcacaaaagcaaaactataattaataataa
caataaagtccccaggcatgtgcccgtggcagagaaagatgtaggttaag
gctctatgaggagcccatcccaacacagccaggctaacagcaccaagaac
tgggaggtggactccccttactacaagaaagactttgccggttcgaggta
ccgcgaggaatgggcaggcctgggacacgaggcacagagattgcagaagc
tcttcagctccagaggacgggctagcctctgttggaaagccgcccaagct
ctgccctgtgtgtgcaggtggtcaggctggagctaggacagaccatgaac
agaaagcagggctgccctggtctgataccaaagacaggcctaggcagaag
gctagagagctggcctcagagatagggctgctgagtgcaggatgttgtac
ctctaccacccatccagtctaagttctagatctctacttcctctctcgcc
aggggtgtgccctgacatcttcttctgtgacctcagttccagcaagcctt
ctcagggtagaggagctccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45749512_45750704
seq2: B6Ng01-253B13.b_48_1163 (reverse)

seq1  AAGAAGAGAGAGAGAGAGAAAGAAAGAAAGAAGAGAGAGAAAGAAAGAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAAAGAAAGAAAGAAAGAAGAGAGAGAGAAAGAAAGAAAGAGAGAG  100
                        |||||||||| | |  |         ||||| 
seq2  ------------------AAGAAGAGAGGGGGGGA---------AGAGAA  23

seq1  AGAGAGAGAGAATGAATTATCTATATGGATAGGTGTCAAAACCATAATGC  150
      || ||| | | ||||| |||||||||||||  ||||||||  ||| ||||
seq2  AGGGAGGGGGGATGAACTATCTATATGGATTAGTGTCAAA--CAT-ATGC  70

seq1  TGAGTG-AAATAATAAGCAAAATACGTTTGGAGCAGAGTGTACACTCTAC  199
      |||||| ||||||| ||||||||||| || ||||||||||||||||||||
seq2  TGAGTGAAAATAAT-AGCAAAATACG-TTAGAGCAGAGTGTACACTCTAC  118

seq1  AACATGATGTCC--TTTATGAGTTATCACTAAGCTATCATAGCTATTTAA  247
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AACATGATGTCCCTTTTATGAGTTATCACTAAGCTATCATAGCTATTTAA  168

seq1  GGATCGCAATGGAAATG-AAGAACAAAAATAGGGCTATATGCACGTCAAA  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGATCGCAATGGAAATGAAAGAACAAAAATAGGGCTATATGCACGTCAAA  218

seq1  CTCATGGTAGAGGCTGGTCCTGGGAAAGGGGCGTGACCCTCCTGGGTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTAGAGGCTGGTCCTGGGAAAGGGGCGTGACCCTCCTGGGTTGT  268

seq1  GATGAAAGGGACTTTTAGTCCCTTCTCTAAGACTTCTTTTCTTTTAA-GG  395
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATGAAAGGGACTTTTAGTCCCTTCTCTAAGACTTCTTTTCTTTTAAGGG  318

seq1  GGGGGGGGGAGCCATTAAGCTAAGATGGTTCACTTAAGTCAAAGTTAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGAGCCATTAAGCTAAGATGGTTCACTTAAGTCAAAGTTAGAG  368

seq1  GACATGAAGTGTCATTGAAATTCTTGTCTAAAATACAGACAGAGGTCCGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAGTGTCATTGAAATTCTTGTCTAAAATACAGACAGAGGTCCGA  418

seq1  GAGCTCATCTTTGTTCTCCTAAATTGTCCTTTAGTCGTCTTTCCCTTAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATCTTTGTTCTCCTAAATTGTCCTTTAGTCGTCTTTCCCTTAGC  468

seq1  TAGTAGACTGGTTTTTGTTTTTTTTTTCCCCTCAGACTCTAGCCTGTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACTGGTTTTTGTTTTTTTTTTCCCCTCAGACTCTAGCCTGTCTC  518

seq1  ATTTTCTTTCAACAAGAGAGAAAGCTATTTCAAATTGATTAAATATTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTCAACAAGAGAGAAAGCTATTTCAAATTGATTAAATATTTCA  568

seq1  AAATAGTTGTTACCTCCTGTTTCTTCCCCCACAGTAAACTTTTTCCTCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGTTACCTCCTGTTTCTTCCCCCACAGTAAACTTTTTCCTCCC  618

seq1  AAGTTCTTGGGCTGTTGAGATGAAACCTGATCTCTGTGTGTATTAGATAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTGGGCTGTTGAGATGAAACCTGATCTCTGTGTGTATTAGATAA  668

seq1  AGAGCAGCCACACCGCGAGTCTTGTGCAGAGCCGGTGGACGAACAAATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCCACACCGCGAGTCTTGTGCAGAGCCGGTGGACGAACAAATAA  718

seq1  ATACATAAATAAACAAACAGGCGAGCAAGCGCCCAAGGCTCGGGCTGGCG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAATAAACAAACAGGCGAGCAAGCGCCCAAGGCTCGGGCTGGCG  768

seq1  CTGGGCAGGGCGGACAACAAGCCGCAGTTTTAGGAGCGGAGTTTTCTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGGCGGACAACAAGCCGCAGTTTTAGGAGCGGAGTTTTCTTTT  818

seq1  TTTCATTCCGCAGACGTCGTTTCTGAAGGGTTTTGCCTATTTGACTTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCGCAGACGTCGTTTCTGAAGGGTTTTGCCTATTTGACTTCTT  868

seq1  CGCTTTGAGGAACTTGTCGAGAACAATCATTTTCGATCTGTCTTTCCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTGAGGAACTTGTCGAGAACAATCATTTTCGATCTGTCTTTCCCTC  918

seq1  GGGGTCCCGTAAGGTCACTGGACATAAGATAGCTGTGAAATTTGACATTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCCGTAAGGTCACTGGACATAAGATAGCTGTGAAATTTGACATTG  968

seq1  TTCCCATTTAAATGCTTTCCCCAGCAAGTGCAAGAGTGCGGCCGCTCGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTAAATGCTTTCCCCAGCAAGTGCAAGAGTGCGGCCGCTCGCT  1018

seq1  CGGGTGTGGGGCTCGCGGCCGGGTGCTCTGAGCCTCGCCGGCCCTCCAGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGGGGCTCGCGGCCGGGTGCTCTGAGCCTCGCCGGCCCTCCAGG  1068

seq1  CTTCAAAGCCTGCCATCCTTGATCTCCCCAAAGAATGTTTTTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCCTGCCATCCTTGATCTCCCCAAAGAATGTTTTTGAATTC  1116

seq1: chr19_45612310_45613453
seq2: B6Ng01-253B13.g_67_1189

seq1  GAATTCAGAGCTCCCCTGTGATTCATGGCCTTCTGCCCAAGGCAGGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCCCCTGTGATTCATGGCCTTCTGCCCAAGGCAGGGTCC  50

seq1  TCCACTGCCCCTTCACACACACAAACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCCCCTTCACACACACAAACACACACACACACACACACACACAC  100

seq1  ACACACACACACACACACATGCATACACACACATACACACGCACATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATGCATACACACACATACACACGCACATGGCC  150

seq1  CATCCAGTCAGATTCCCCAGGCCCAAGGCTAAGGTCAGTGAGCAATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTCAGATTCCCCAGGCCCAAGGCTAAGGTCAGTGAGCAATCCAG  200

seq1  TGATCAAGTGAGAGCGAACTGTACTCCTTACTGGAAGCCATAGGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTGAGAGCGAACTGTACTCCTTACTGGAAGCCATAGGCTGTTT  250

seq1  GGAGGCCCCGTTGTGTTTGAGGAACAAACACAAGCCTCCCAAAAGTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCCGTTGTGTTTGAGGAACAAACACAAGCCTCCCAAAAGTCCAG  300

seq1  GAAGCTGGTAGGGTCACAAACTCAGCTCTGGGTTAAACCCACAGCTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGTAGGGTCACAAACTCAGCTCTGGGTTAAACCCACAGCTTATC  350

seq1  ATTTACTGGGTGTGTGACATTGGGGGAGTTCCCTGACCTCAGTTTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGGGTGTGTGACATTGGGGGAGTTCCCTGACCTCAGTTTTTCAC  400

seq1  TTATAAAATGGGGCTAAGAAGGGAACCCTTCACAGGCAAACACATGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATGGGGCTAAGAAGGGAACCCTTCACAGGCAAACACATGTGCA  450

seq1  TTGTCCAGTCCAACAATTTAAAAAAAAAAATTCTACCCAGAGGCCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGTCCAACAATTTAAAAAAAAAAATTCTACCCAGAGGCCTGGAA  500

seq1  TGGTGGTGCATGCCTCTAAGGAGACAGAGGCAGGTGGATCTCTGAGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCATGCCTCTAAGGAGACAGAGGCAGGTGGATCTCTGAGTCTG  550

seq1  AGTCAGCCTGGGCTATATAGTCACAAAAGCAAAACTATAATTAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCTGGGCTATATAGTCACAAAAGCAAAACTATAATTAATAATAA  600

seq1  CAATAAAGTCCCCAGGCATGTGCCCGTGGCAGAGAAAGATGTAGGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTCCCCAGGCATGTGCCCGTGGCAGAGAAAGATGTAGGTTAAG  650

seq1  GCTCTATGAGGAGCCCATCCCAACACAGCCAGGCTAACAGCACCAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATGAGGAGCCCATCCCAACACAGCCAGGCTAACAGCACCAAGAAC  700

seq1  TGGGAGGTGGACTCCCCTTACTACAAGAAAGACTTTGCCGGTTCGAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGGACTCCCCTTACTACAAGAAAGACTTTGCCGGTTCGAGGTA  750

seq1  CCGCGAGGAATGGGCAGGCCTGGGACACGAGGCACAGAGATTGCAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGGAATGGGCAGGCCTGGGACACGAGGCACAGAGATTGCAGAAGC  800

seq1  TCTTCAGCTCCAGAGGACGGGCTAGCCTCTGTTGGAAAGCCGCCCAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTCCAGAGGACGGGCTAGCCTCTGTTGGAAAGCCGCCCAAGCT  850

seq1  CTGCCCTGTGTGTGCAGGTGGTCAGGCTGGAGCTAGGACAGACCATGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTGTGCAGGTGGTCAGGCTGGAGCTAGGACAGACCATGAAC  900

seq1  AGAAAGCAGGGCTGCCCTGGTCTGATACCAAAGACAGGCCTAGGCAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGGGCTGCCCTGGTCTGATACCAAAGACAGGCCTAGGCAGAAG  950

seq1  GCTAGAGAGCTGGCCTCAGAGATAGGGCTGCTGAGGTGCAGGGATGGTTG  1000
      |||||||||||||||||||||||||||||||||| ||||| |||| ||||
seq2  GCTAGAGAGCTGGCCTCAGAGATAGGGCTGCTGA-GTGCA-GGAT-GTTG  997

seq1  TACCTCTACCACCCAATCCAGTCTAAGTTCTAGAATCTTCTACCTTTCCT  1050
      |||||||||||||| |||||||||||||||||| ||| |||||  |||||
seq2  TACCTCTACCACCC-ATCCAGTCTAAGTTCTAG-ATC-TCTAC--TTCCT  1042

seq1  CTCTCGCCAGGGGTGTGGCCCCTGGAACCCCTCTTCTCTGGTGACCCTCA  1100
      |||||||||||||||||  |||||     | ||||||   |||| |||||
seq2  CTCTCGCCAGGGGTGTG--CCCTG----ACATCTTCTTCTGTGA-CCTCA  1085

seq1  GTTCCCAGCAGGGCCCTTCTCAGGGTGAAGAGGAGGCTCCAGCT  1144
      ||| |||||| |  ||||||||||||  |||||| |||||||||
seq2  GTT-CCAGCAAG--CCTTCTCAGGGT--AGAGGA-GCTCCAGCT  1123