BAC Information

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BAC

Clone NameB6Ng01-253E16
Chromosome19 (Build37)
Map Location 34,767,837 - 34,768,931
singlet/doubletsinglet
Overlap geneSlc16a12
Upstream geneEG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1
Downstream geneLOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253E16.bB6Ng01-253E16.g
ACCGA060068GA060069
length1,1061,147
definitionB6Ng01-253E16.b B6Ng01-253E16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctacacctgtgcttttgtaatactcctatggttgttcataaa
atatctgtctaagttgttcatattctttggtttaatattggtagatcacc
tgtgcctagaaatgtactcatttctctttgatttttccaacttactgaat
atagattttcaaacagttttctgtcgatgtctgttgtaaatatcttttat
atatttttttcttttcaaaaggaaaggggaaaaggaaaacattcacaagg
aaaaagctcacaatgttttaaacataaagttttgtgataggtttatgcct
gtcctacagtctataggttaaaaaattctgaaatacatcgttgtaaactc
taatgacttctagactttctatattgtatattgtatatattatataatat
atatattgtcttagtcagggtttctattcctggacaaaacatcatgacca
agaagcagttggggaggaaagggtttattcagcttacacttccatactgc
tgttcatcaccaaggaagtcaggactggaactcaagcaggtcaggaaaca
ggagctgatgcagaggccacggagggtatttctttacttacttgctcctc
ctggcttgctcagcctgctctcttatagaaccaagactaccagcccaaag
atggcaccacccacaaggggacctccccccttgatcactaattgagaaaa
tgccttacagctggatctcatggaggcatttcctcaactgaagctccttt
ctctgtgataactccagcctgtgtcaagttgacacaaaactagccagtgc
atatatgtatatatacatacacacatatgtatatatacatgtatgtatat
atatatatatatatatttatgaaaatgaaagaaaataaactggggaaaga
gattacttaagggttacgacagagctggtgcataaggactaggggactag
ggaaatgcccagtgaaaggaaaggaacagagttgggacaggtatcatctg
ccttctgtaagggaactgagtcgggtaccatctggcctccatgcccacct
caactgaaagcacatacagtcttgttctctatggcttctttctctggcca
tttggg
gaattctcacctgaggaataccgaatggctgagaagcatcagaaaaaatg
ttcaacaaccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaaaagtcataatggctaagatcaaaaattaacctgatagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttggacaatcactctggaaatcagttgggcggttcctca
gaaaattggacatagtactactagaggtcccgcaatacctctcctgggca
tatatccagaagatattccaactggtaagaaggacacatgctcctctatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaagtgtggtacatctacacaatgg
agtactactcagcgattaaaaagaatgaatttatgaaattcctaggcaac
tggttggacctggagggcatcatcctgagtgaggtaacccaatcaaaaag
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatataatttgctaaacgcatgaaactcaag
aagaatgaagaccaaagtgtggacacgttgccccttcttagaattgggaa
caaaacacccatggaaggagctacagagacaaaatttggagctgagacga
aaggatggaccatatagagactgccttatccagggtccatcccataatca
gcttccaaatgctgacaccattgcatgcactagcaagattttgctgaaag
gaccctgatatagttgtctcttgtgagactaccacggggcctagcaaaca
cagaagtgggatgctcacagtcagctattggatgggatcacagggctccc
aatggagagctagagaaagtacccagagctaaagggatctgcaacctata
gtgacacatatgaaataacagtaccccccacccccccatccctgccctag
ctctgactctagctgcatatgatccgaaatgtcttagttggtcaatgagg
gagaagtccagtggtcatgcaccttaatgcttcagtaaggggggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34767837_34768931
seq2: B6Ng01-253E16.b_43_1148 (reverse)

seq1  CCCAAATGG-CAGAGAAAGAAAGCATAGAGA--CAGACTGGTATGTGCTT  47
      ||||||||| |||||||||||  ||||||||   ||||| ||||||||||
seq2  CCCAAATGGCCAGAGAAAGAAGCCATAGAGAACAAGACT-GTATGTGCTT  49

seq1  TCAGGTGA-GTGGGCATGGAGG-CAGATGGTACCCGACTCAGTT-CCTTA  94
      |||| ||| ||||||||||||| ||||||||||||||||||||| |||||
seq2  TCAGTTGAGGTGGGCATGGAGGCCAGATGGTACCCGACTCAGTTCCCTTA  99

seq1  CAG-AGGCAGATGATACCTGTCCCAACTCTGTTCCTTTCC-TTCACTGGG  142
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGAAGGCAGATGATACCTGTCCCAACTCTGTTCCTTTCCTTTCACTGGG  149

seq1  CATTTCCCTAGT-CCCTAGT-CTTATGCACCAGCTCTGTCGTAA-CCTTT  189
      |||||||||||| ||||||| ||||||||||||||||||||||| |||| 
seq2  CATTTCCCTAGTCCCCTAGTCCTTATGCACCAGCTCTGTCGTAACCCTTA  199

seq1  AGTAATCTCTTT-CCCAGTTTATTTTCTTTCATTTTCATAAATATATATA  238
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTCTTTCCCCAGTTTATTTTCTTTCATTTTCATAAATATATATA  249

seq1  TATATATATATACATACATGTATATATACATATGTGTGTATGTATATATA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATACATACATGTATATATACATATGTGTGTATGTATATATA  299

seq1  CATATATGCACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTAT  349

seq1  CACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTG  399

seq1  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGGAGGTCCCCTTGTGGGTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGGAGGTCCCCTTGTGGGTG  449

seq1  GTGCCATCTTTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCTTTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGC  499

seq1  AAGCCAGGAGGAGCAAGTAAGTAAAGAAATACCCTCCGTGGCCTCTGCAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGAGGAGCAAGTAAGTAAAGAAATACCCTCCGTGGCCTCTGCAT  549

seq1  CAGCTCCTGTTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGTTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTG  599

seq1  ATGAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAAC  649

seq1  TGCTTCTTGGTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGGTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGAC  699

seq1  AATATATATATTATATAATATATACAATATACAATATAGAAAGTCTAGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATTATATAATATATACAATATACAATATAGAAAGTCTAGAA  749

seq1  GTCATTAGAGTTTACAACGATGTATTTCAGAATTTTTTAACCTATAGACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGAGTTTACAACGATGTATTTCAGAATTTTTTAACCTATAGACT  799

seq1  GTAGGACAGGCATAAACCTATCACAAAACTTTATGTTTAAAACATTGTGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAGGCATAAACCTATCACAAAACTTTATGTTTAAAACATTGTGA  849

seq1  GCTTTTTCCTTGTGAATGTTTTCCTTTTCCCCTTTCCTTTTGAAAAGAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCCTTGTGAATGTTTTCCTTTTCCCCTTTCCTTTTGAAAAGAAA  899

seq1  AAAATATATAAAAGATATTTACAACAGACATCGACAGAAAACTGTTTGAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAAAAGATATTTACAACAGACATCGACAGAAAACTGTTTGAA  949

seq1  AATCTATATTCAGTAAGTTGGAAAAATCAAAGAGAAATGAGTACATTTCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATATTCAGTAAGTTGGAAAAATCAAAGAGAAATGAGTACATTTCT  999

seq1  AGGCACAGGTGATCTACCAATATTAAACCAAAGAATATGAACAACTTAGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGTGATCTACCAATATTAAACCAAAGAATATGAACAACTTAGA  1049

seq1  CAGATATTTTATGAACAACCATAGGAGTATTACAAAAGCACAGGTGTAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTTATGAACAACCATAGGAGTATTACAAAAGCACAGGTGTAGA  1099

seq1  TGAATTC  1095
      |||||||
seq2  TGAATTC  1106