BAC Information

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BAC

Clone NameB6Ng01-253K06
Chromosome19 (Build37)
Map Location 35,497,136 - 35,498,211
singlet/doubletsinglet
Overlap geneLOC100042292
Upstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253K06.bB6Ng01-253K06.g
ACCGA060318GA060319
length1,1751,078
definitionB6Ng01-253K06.b B6Ng01-253K06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttctgggtcttcaattctgactcattgatctaccttcctgtt
tttgtaccaatacaacacagtttttatctctattgctctgtagtacagct
tgagttcagggatggtgattcaggcagaagttcttttattgctgagtaca
gttcttgctatcctgggtttttttgttattccagatgaatttgcaaattg
ctctttctaactctatgaaaaattgagttgcaattttgatgggaaatgca
tttaatctatagattgctttcatcaaggtggccatttttactatattaat
cctgccaatccatgagcatgggagatcttcccattttgtgagatctcctt
caatttctttcttcaaagacttgaagttcttgtcatacagatctttcact
tggtcagagtgacacccaggtattttatattattggtgactattgtgtaa
gctgttgtttccctaatttctttctcagaatgtttatctttgaatagaga
aacacacttatttgtttgagtcaattttatattcagccactttttggaag
ttgtttatcagctgtaggagttctctggtggaattttggggtcacttaag
tatattatcatatcatctacaaatagtgatgttttgacttcttcctttcc
aatttgtatccctttgacctccttttgttgtctacttcctctggctagga
ctttgagtaccatattgaataggtagagagagagtgggcaaccttgtcta
catcctgattttagtgggttgcttcaagtttctctcaatttagtttgatg
ttggctactggcttgctgtatattgctgttattatgtttgggtatgggcc
ttgaactccttttatttccaagacatttaacataaaaggatgttggattt
tgtcaaatgtcttttcaccatctaatgaaatgatcacgtgatttttttct
ctgaatttgtttatatagtggattacattgacagatttcatattatgacc
attcctgcatccctgggatgaaaccttctgttcattatagatgattgctt
tgatgtgttcttgaaattgtatgtggagactttaattgagtattttgcat
tggatattccataagagtattgcttgagtctcctcgtgagttggagtcca
tcattttattgcatatggtatacga
gaattctaggttcacaaagttttctttttacatattgaagatatttcatt
agctgccaatcattgcaatttctgattagtccatggtaattcttcttgtt
gttcacctatagaaattacttaaaagtcgaatgttataaatactttcact
ttatatttactttttagcaattgaaaataatgagcccaatattgttattt
ttatatcagttctcttgaattggtgaaaggattagcacttgattggtcct
gaataaagaattctatccttatagaagtagtcaggcattaagcagttcac
tgagggttaagtatagaacaagaaacctaaggatcagtatagaacaacaa
agacgtggagacattgaaactactgatgtatatcaactagttctgcttct
atgagtggtgctttgatgattccacaaaaagcccaatttatattcctaac
atctatgttgccagtttggccacccagaagcacagagtatgggggagcca
ggtaggcttttcaggagtttttcagggaaaagaaccacaaagaatgaact
tgattttttacacacacacacaaacacaaataaaataagaaatataaaaa
tgtgattttaaagcctaacaaatattacaaacatgcagaacaagagtaaa
ataaaagaatgtctcacacccagaaatttagacaaaatttaataaaattg
tcttcattgtttcatttttttaaatactagtttatggacagggtagacgc
tcagcaggccaagggtgatctagatctgatgccctcactttgcttcccag
aaaacacatagtggaaggagaaaaattgactctaggaagctggcttttga
ctaccacacgtgtgtactggcatgggcaaccctctcactaaagaaataaa
tgtaatccaccacaggtaaataaccattatttttaaagcctattattaca
ttttgctagcatctgagaattctacatataaaccagaacttgaattcaga
cagtacttgttacacaagtgctctaagcatattatttgagacacagaaga
gatgtttttgttatgagccaatcatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35497136_35498211
seq2: B6Ng01-253K06.g_64_1141

seq1  GAATTCTAGGTTCACAAAGTTTTCTTTTTACATATTGAAGATATTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTCACAAAGTTTTCTTTTTACATATTGAAGATATTTCATT  50

seq1  AGCTGCCAATCATTGCAATTTCTGATTAGTCCATGGTAATTCTTCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAATCATTGCAATTTCTGATTAGTCCATGGTAATTCTTCTTGTT  100

seq1  GTTCACCTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCACT  150

seq1  TTATATTTACTTTTTAGCAATTGAAAATAATGAGCCCAATATTGTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTACTTTTTAGCAATTGAAAATAATGAGCCCAATATTGTTATTT  200

seq1  TTATATCAGTTCTCTTGAATTGGTGAAAGGATTAGCACTTGATTGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAGTTCTCTTGAATTGGTGAAAGGATTAGCACTTGATTGGTCCT  250

seq1  GAATAAAGAATTCTATCCTTATAGAAGTAGTCAGGCATTAAGCAGTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGAATTCTATCCTTATAGAAGTAGTCAGGCATTAAGCAGTTCAC  300

seq1  TGAGGGTTAAGTATAGAACAAGAAACCTAAGGATCAGTATAGAACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTAAGTATAGAACAAGAAACCTAAGGATCAGTATAGAACAACAA  350

seq1  AGACGTGGAGACATTGAAACTACTGATGTATATCAACTAGTTCTGCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGGAGACATTGAAACTACTGATGTATATCAACTAGTTCTGCTTCT  400

seq1  ATGAGTGGTGCTTTGATGATTCCACAAAAAGCCCAATTTATATTCCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGTGCTTTGATGATTCCACAAAAAGCCCAATTTATATTCCTAAC  450

seq1  ATCTATGTTGCCAGTTTGGCCACCCAGAAGCACAGAGTATGGGGGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTGCCAGTTTGGCCACCCAGAAGCACAGAGTATGGGGGAGCCA  500

seq1  GGTAGGCTTTTCAGGAGTTTTTCAGGGAAAAGAACCACAAAGAATGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCTTTTCAGGAGTTTTTCAGGGAAAAGAACCACAAAGAATGAACT  550

seq1  TGATTTTTTACACACACACACAAACACAAATAAAATAAGAAATATAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTACACACACACACAAACACAAATAAAATAAGAAATATAAAAA  600

seq1  TGTGATTTTAAAGCCTAACAAATATTACAAACATGCAGAACAAGAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTAAAGCCTAACAAATATTACAAACATGCAGAACAAGAGTAAA  650

seq1  ATAAAAGAATGTCTCACACCCAGAAATTTAGACAAAATTTAATAAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAATGTCTCACACCCAGAAATTTAGACAAAATTTAATAAAATTG  700

seq1  TCTTCATTGTTTCATTTTTTTAAATACTAGTTTATGGACAGGGTAGACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTGTTTCATTTTTTTAAATACTAGTTTATGGACAGGGTAGACGC  750

seq1  TCAGCAGGCCAAGGGTGATCTAGATCTGATGCCCTCACTTTGCTTCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGCCAAGGGTGATCTAGATCTGATGCCCTCACTTTGCTTCCCAG  800

seq1  AAAACACATAGTGGAAGGAGAAAAATTGACTCTAGGAAGCTGGCTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATAGTGGAAGGAGAAAAATTGACTCTAGGAAGCTGGCTTTTGA  850

seq1  CTACCACACGTGTGTACTGGCATGGGCAACCCTCTCACTAAAGAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACACGTGTGTACTGGCATGGGCAACCCTCTCACTAAAGAAATAAA  900

seq1  TGTAATCCA-CACAGGTAAATAACCATTATTTTTAAAGCCTATTA-TACA  948
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAATCCACCACAGGTAAATAACCATTATTTTTAAAGCCTATTATTACA  950

seq1  -TTTGCTAGGCATCTGAGAATTCTACATATAAACCAGAAACTTGAAATTC  997
       ||||||| |||||||||||||||||||||||||||| |||||| |||||
seq2  TTTTGCTA-GCATCTGAGAATTCTACATATAAACCAG-AACTTG-AATTC  997

seq1  AGACAAGTACTTG-TACACAAGTGCTCTAAAGCATATTATTTGAGACACA  1046
      |||| |||||||| |||||||||||||| |||||||||||||||||||||
seq2  AGAC-AGTACTTGTTACACAAGTGCTCT-AAGCATATTATTTGAGACACA  1045

seq1  G-AGAGATGTTTTTG-TATGAGCC-ATCATAGC  1076
      | ||||||||||||| |||||||| ||||||||
seq2  GAAGAGATGTTTTTGTTATGAGCCAATCATAGC  1078