BAC Information

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BAC

Clone NameB6Ng01-254C21
Chromosome19 (Build37)
Map Location 34,338,533 - 34,339,698
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2
Downstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254C21.bB6Ng01-254C21.g
ACCGA060717GA060718
length1,2341,172
definitionB6Ng01-254C21.b B6Ng01-254C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatgggattatttgaat
ttctggagtctagcttcttgagctctttctatatattggatattattccc
ctatcagatttaggattggtaaaaatcctttcccaatctgtcggtggcct
ttttgtcttattgacagtgttttttgccttatagaagctttgcaatttta
tgaggtcctacttgtcaattcttgatcttacagcacaaggcattgctgtt
ctgtttaggaatttttcccttgtgcccatatcttctaggcttttccctgc
tttatcctctataaatttcagtgtctcttgttttatgtggaggtctttga
cccacttagacttgagctttgtgcaaggagataagaatggatcaattcaa
attcttctatatgataaccgccagttatgctagcaccatttgttggaaat
gctgtctttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccatagatatgtagattcatttctgggtcttcaattctattccactg
atctatctgtctgtcattgtaccagtaccatgaagtttttttttatcaca
ttgatctgtagtacagcttaatcaggcatggtgattccactagaggttct
tttattgttgagaatagtttttgctatcctaggttttttattattccaga
tgaatttgcaaattgccctttctatctcagtgaagaattgagttggaatt
ttgatgggcattgcattgaatctgtacattgctttcaacaggatagccat
ttttactatattaatcctgccaatccatgagcctgggagatctttccatc
ttctgagattttttttttaatttatttcttcagagacttgaagttcttat
cgtacagatctttcacttccttacttagagtcacaccaaggtattttata
ttatttgtgactattgtgaagggtgtgttttcctaatttctttatcagtc
cgtttatcctttggtgtagaggaaaggccattgacttggtttggagtatt
tttattttccagctactaacactgaagctgttatatcaagtagggagtct
ctctaatgggattttggggtcactggtatatactataatgtcatctggca
atagtgatatttgaactctccatcctatgatacctgaagtcttgggtcga
tggcctgggctaggaactcaagtacctaatatca
gaattccagataaaatatataatcttacaggatgactgttatactgacat
tcttctgagattttattcatgtaaagatttagatttgtgagtgacaagag
gcttttatgtctagaagtttgatcatgattggaagtttataatttcatca
cttttttttaacagaccaaaatgcagactttcatgacgaccctgaccaga
aagatcaccctggaggtggagcccagaaatatcatccagaatgaaaacca
agagctagtatgcataggaaaggcaatccccagaccagcagagtgtcatc
tttgtaggcaagcagctggaccatggccacatgttttctaatcacaacat
ccagagtcaactttgcacctggactcctatctgaggggtgggtattaact
aattaattcttcagtttgcattctcagtgggcaatgatggtatttctttg
cactatatatagtcatttgcccagatttaagtttacaaattatgtttcag
taatggaatctatgttaagaatgttaatagaggtttcattaattggtcaa
aaaaattaataatagattgtgcttattccaaccagcatttccagagagaa
caaaagagtatgatcacaaactccaccctcctgcttcgaatttagtggtg
actgtaatgaattcaagtgtatgagcgagaattgcttttggcctggtgga
acttacaagtttaagcctgcttttttattttaattgacccttgtaagatt
cagatcccagaaagaaatcataaagcaaaatatcttggtttttatgtttc
cttcttcatctatgacagtttaagaaattgtagttattgtgctgagtctt
gctattagaaggttgttttcaggtgtgctacagttatcactttgtggtag
caaatgttggactgtcataaaatgcatgcaggaatggaacagtactagaa
atcatactattgtcactagaatccagcactccagcacacttttgttcagc
ctaaatgggaatctgtaaaagaacgtgcttgtgtgccattaacattagaa
taatgaggtctaaggaaatactatgccagaagcttggaaagacttgatgg
aacatatgatgctgattctaaccttatcatgctcctcacctcagaaccat
tccaataaatctgtttttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34338533_34339698
seq2: B6Ng01-254C21.g_69_1240 (reverse)

seq1  ATGTAAAA--AGATATTATGGAATGGTGCCTGAAGTGAGGAGCATGGAAT  48
      ||||||||  |||| |  |||||||||  |||| ||||||||||||  ||
seq2  ATGTAAAAACAGATTTATTGGAATGGT-TCTGAGGTGAGGAGCATG--AT  47

seq1  TAGGTTAGAATCAAGCATCAT-TGTTCCATCAAGTTCTTTCAAACCTCCT  97
       ||||||||||| |||||||| |||||||||||| |||||| || || ||
seq2  AAGGTTAGAATC-AGCATCATATGTTCCATCAAG-TCTTTCCAAGCTTCT  95

seq1  GGCATAGTATCTCCTTGG--CTCTGTTATCTAAATGTAATGGCAC---AG  142
      |||||||||| ||||| |  |||  |  |||||   |||||||||   ||
seq2  GGCATAGTATTTCCTTAGACCTCATTATTCTAATGTTAATGGCACACAAG  145

seq1  CACCTTCTTTTACAGATTCCCATGTAGGCTGA--CAAAGTGTGCTGGAGT  190
      ||| ||||||||||||||||||| ||||||||   |||||||||||||||
seq2  CACGTTCTTTTACAGATTCCCATTTAGGCTGAACAAAAGTGTGCTGGAGT  195

seq1  GCTGGATTCTAGTGACAATAGTATGATTCTTAGTACTGTTCCATTCCTGC  240
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GCTGGATTCTAGTGACAATAGTATGATTTCTAGTACTGTTCCATTCCTGC  245

seq1  ATGCATTTTATGACAGTCC-ACATTTGCTACCACAAAAGTGATAACTGTA  289
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  ATGCATTTTATGACAGTCCAACATTTGCTACCAC-AAAGTGATAACTGTA  294

seq1  GCACACCTGAAAACAACCTTCTAATAGCAAGACTCAGCACAATAACTACA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGAAAACAACCTTCTAATAGCAAGACTCAGCACAATAACTACA  344

seq1  ATTTCTTAAACTGTCATAGATGAAGAAGG-AACATAAAAACCAAGATATT  388
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTCTTAAACTGTCATAGATGAAGAAGGAAACATAAAAACCAAGATATT  394

seq1  TTGCTTTATGATTTCTTTCTGGGATCTGAATCTTACAAGGGTCAATTAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATGATTTCTTTCTGGGATCTGAATCTTACAAGGGTCAATTAAA  444

seq1  ATAAAAAAGCAGGCTTAAACTTGTAAGTTCCACCAGGCCAAAAGCAATTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGCAGGCTTAAACTTGTAAGTTCCACCAGGCCAAAAGCAATTC  494

seq1  TCGCTCATACACTTGAATTCATTACAGTCACCACTAAATTCGAAGCAGGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATACACTTGAATTCATTACAGTCACCACTAAATTCGAAGCAGGA  544

seq1  GGGTGGAGTTTGTGATCATACTCTTTTGTTCTCTCTGGAAATGCTGGTTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGTTTGTGATCATACTCTTTTGTTCTCTCTGGAAATGCTGGTTG  594

seq1  GAATAAGCACAATCTATTATTAATTTTTTTGACCAATTAATGAAACCTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCACAATCTATTATTAATTTTTTTGACCAATTAATGAAACCTCT  644

seq1  ATTAACATTCTTAACATAGATTCCATTACTGAAACATAATTTGTAAACTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATTCTTAACATAGATTCCATTACTGAAACATAATTTGTAAACTT  694

seq1  AAATCTGGGCAAATGACTATATATAGTGCAAAGAAATACCATCATTGCCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGGCAAATGACTATATATAGTGCAAAGAAATACCATCATTGCCC  744

seq1  ACTGAGAATGCAAACTGAAGAATTAATTAGTTAATACCCACCCCTCAGAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATGCAAACTGAAGAATTAATTAGTTAATACCCACCCCTCAGAT  794

seq1  AGGAGTCCAGGTGCAAAGTTGACTCTGGATGTTGTGATTAGAAAACATGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCCAGGTGCAAAGTTGACTCTGGATGTTGTGATTAGAAAACATGT  844

seq1  GGCCATGGTCCAGCTGCTTGCCTACAAAGATGACACTCTGCTGGTCTGGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGTCCAGCTGCTTGCCTACAAAGATGACACTCTGCTGGTCTGGG  894

seq1  GATTGCCTTTCCTATGCATACTAGCTCTTGGTTTTCATTCTGGATGATAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTTTCCTATGCATACTAGCTCTTGGTTTTCATTCTGGATGATAT  944

seq1  TTCTGGGCTCCACCTCCAGGGTGATCTTTCTGGTCAGGGTCGTCATGAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCCACCTCCAGGGTGATCTTTCTGGTCAGGGTCGTCATGAAA  994

seq1  GTCTGCATTTTGGTCTGTTAAAAAAAAGTGATGAAATTATAAACTTCCAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTTTGGTCTGTTAAAAAAAAGTGATGAAATTATAAACTTCCAA  1044

seq1  TCATGATCAAACTTCTAGACATAAAAGCCTCTTGTCACTCACAAATCTAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCAAACTTCTAGACATAAAAGCCTCTTGTCACTCACAAATCTAA  1094

seq1  ATCTTTACATGAATAAAATCTCAGAAGAATGTCAGTATAACAGTCATCCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACATGAATAAAATCTCAGAAGAATGTCAGTATAACAGTCATCCT  1144

seq1  GTAAGATTATATATTTTATCTGGAATTC  1166
      ||||||||||||||||||||||||||||
seq2  GTAAGATTATATATTTTATCTGGAATTC  1172