BAC Information

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BAC

Clone NameB6Ng01-254I12
Chromosome19 (Build37)5 (Build37)
Map Location 38,268,876 - 38,269,24434,083,442 - 34,084,579
singlet/doubletsingletsinglet
Overlap gene5730455O13Rik
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c
Downstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254I12.bB6Ng01-254I12.g
ACCGA060974GA060975
length1,0541,142
definitionB6Ng01-254I12.b B6Ng01-254I12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,268,876 - 38,269,244)(34,083,442 - 34,084,579)
sequence
gaattctttctgcctaccggatgtcccaacttccattctacatgttttct
gtagcccatagttttttttttattgacaagagaggcttccatataataca
caagatattctctctatagttttcaaatatttttactttaaaagagactg
gcttgtcttttcaaaaagacagacatttctgtgttaaccactgatgttta
gaaacatgcattagagacctcagagtttcaaacacagtgcctgtaatctc
acaaaatagaatctgtgccagtcaagcaggtgtgggtccctcacaatggg
atgttggtgtgaggccgctgtttgtatcctgacctggtctctatcatatt
agatggttttattaaatgctttcccaaatcacgccttatgaaagtttgtg
tggaaggctggagacagggcagggaaagtgttctttagccaaataacatt
aaaagcatgggtgcactgggtacctagttcacgactttttgagatgctga
gaaagaaagatcacgtgaatacaaactgactttagaccagcctaggcaat
gtagaccttgttttggcaaaacagtattgtcttagttagggttttactgc
tgtgaacagataccatgaccaaggcaagtcttataaaaacaacatttaat
tggggctggcttataggttcagagtttcagtccattatcatcaaggtggg
agcatggcagcatccaggcaagcatggcagtctccaggcaggcatggccc
aggcagagatgagaattctacgccttcatccaaaggctgctagtggaaga
ctgacttccaggcaactagggtgagagtcttaagcccatacccacagtga
cacacacctattccaacaaggccacacctccagatggtgccactccctgg
tccaagaatatacaaaccatcacattccactccctggcccttatagattt
gtttaaaacatgagtctgtgggggctatacttaaacatagcataatgcaa
atgcatttagtctaacttcaaagttctcatagtctatagcagcctcaata
ttaa
gaattcctgaggcagcagcagacagtacaggccactgacagtacccagta
atacactaaaggatgaagacgatgggcagacacaggacagctccagactg
ctggtcataggagataccctctactgtggggacacacctggcaaccataa
tcttgtcctcgtagggacaccaggattcagatttaaccacggagccacta
ggctccttctgctgttactatgcacaggtttacatgcaagaatcacctta
ttcctgcttagcataatgtttcctttaacagttaagaaagaagtttcaag
aaactgagaatgtcccattctgctcactgcttctctgtacatgttccaga
tcctgtctggagtcaaggattttttttcccctggacagggacttgctaag
tagcctaagctgaacttaagatcttcctcccgttgcgctccaaggatggg
gttacaatgtgaaggtggtggtgaggccacaggacacccagccctggcct
gtccatggagccatttccaaatgagaaaggcaaagagctctagactgtcc
acttagaggggtgccagtgaactgttggcgggcagggaacaccattctga
aagctttgtggcatcacagtacaacttcctcacttcttggtggctggagc
acagccatgaacatttgtgctaaagaagctggagccttgagcctacaaca
tacagagattcccttgtgaagccccatcttgcacattgccctgtgggtta
ggacttgaattttctgttacaagccacacaaagcctcaggtatattcaag
ttgcagatgtcagttcttatccccaaggcctgctcagcaatgtgaatgcc
caacagaaaagattttcattttcaaggcttctttcaatgtatgtcaccca
ctattttaggaatttactcatgaattaggcagacggtcatgtatgaaaag
tcagtactagtcagttaaagaattatttaagtggtgaccaatggttgaac
ttcagagagcgctagtcaacatgtctcgggatcatacaggatacagaaca
ctgctgtcaggactgcagttatgacagcttgttgaggcgtgagcagacac
atctatgttcatgggcaatcgggaatctcaatccttggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38268876_38269244
seq2: B6Ng01-254I12.b_623_970 (reverse)

seq1  TGTGATGGTTTGTATATCCAATGTGATGGTTTGTATGTCCTTGGACCAGG  50
                           ||||||||||||||| | |||||||||||
seq2  ---------------------TGTGATGGTTTGTATATTCTTGGACCAGG  29

seq1  TAGTGGCACCATCTGAAGGTGTGGCCTTGTTGGAATAGGCGTGACCTGGT  100
       |||||||||||||| ||||||||||||||||||||||            
seq2  GAGTGGCACCATCTGGAGGTGTGGCCTTGTTGGAATAG------------  67

seq1  TGGAAAGGGTGTGTCACTGTGGGTGTGGGTATAAGATCCTCACCCTAGTT  150
            | |||||||||||||||| ||||  |||||  ||||||||||||
seq2  ------GTGTGTGTCACTGTGGGTATGGGCTTAAGACTCTCACCCTAGTT  111

seq1  GCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAGGCATAGAACT  200
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  GCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAGGCGTAGAATT  161

seq1  CTCAGCTCCTCCTGCACCATGCC--------------------TGCCTGG  230
      |||| |||  ||||  |||||||                    |||||||
seq2  CTCATCTCTGCCTGGGCCATGCCTGCCTGGAGACTGCCATGCTTGCCTGG  211

seq1  ATACTGCCATGTTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTG  280
      || |||||||| |||||||||||||||||||||||||| |||||||||| 
seq2  ATGCTGCCATGCTCCCACCTTGATGATAATGGACTGAAACTCTGAACCTA  261

seq1  TAAGCCAGCCCCAATTAAATGTTGTTTTTTTATAAGACTTGCCTTGGTCA  330
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TAAGCCAGCCCCAATTAAATGTTG--TTTTTATAAGACTTGCCTTGGTCA  309

seq1  TGGTGTCTGTTCACAGCAGTAAAACCCTGACTAAGACAA  369
      |||| ||||||||||||||||||||||| ||||||||||
seq2  TGGTATCTGTTCACAGCAGTAAAACCCTAACTAAGACAA  348

seq1: chr5_34083442_34084579
seq2: B6Ng01-254I12.g_69_1210

seq1  GAATTCCTGAGGCAGCAGCAGACAGTACAGGCCACTGACAGTACCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGCAGCAGCAGACAGTACAGGCCACTGACAGTACCCAGTA  50

seq1  ATACACTAAAGGATGAAGACGATGGGCAGACACAGGACAGCTCCAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAAAGGATGAAGACGATGGGCAGACACAGGACAGCTCCAGACTG  100

seq1  CTGGTCATAGGAGATACCCTCTACTGTGGGGACACACCTGGCAACCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATAGGAGATACCCTCTACTGTGGGGACACACCTGGCAACCATAA  150

seq1  TCTTGTCCTCGTAGGGACACCAGGATTCAGATTTAACCACGGAGCCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTCGTAGGGACACCAGGATTCAGATTTAACCACGGAGCCACTA  200

seq1  GGCTCCTTCTGCTGTTACTATGCACAGGTTTACATGCAAGAATCACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTCTGCTGTTACTATGCACAGGTTTACATGCAAGAATCACCTTA  250

seq1  TTCCTGCTTAGCATAATGTTTCCTTTAACAGTTAAGAAAGAAGTTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTAGCATAATGTTTCCTTTAACAGTTAAGAAAGAAGTTTCAAG  300

seq1  AAACTGAGAATGTCCCATTCTGCTCACTGCTTCTCTGTACATGTTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGAATGTCCCATTCTGCTCACTGCTTCTCTGTACATGTTCCAGA  350

seq1  TCCTGTCTGGAGTCAAGGATTTTTTTTCCCCTGGACAGGGACTTGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGGAGTCAAGGATTTTTTTTCCCCTGGACAGGGACTTGCTAAG  400

seq1  TAGCCTAAGCTGAACTTAAGATCTTCCTCCCGTTGCGCTCCAAGGATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAGCTGAACTTAAGATCTTCCTCCCGTTGCGCTCCAAGGATGGG  450

seq1  GTTACAATGTGAAGGTGGTGGTGAGGCCACAGGACACCCAGCCCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAATGTGAAGGTGGTGGTGAGGCCACAGGACACCCAGCCCTGGCCT  500

seq1  GTCCATGGAGCCATTTCCAAATGAGAAAGGCAAAGAGCTCTAGACTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGAGCCATTTCCAAATGAGAAAGGCAAAGAGCTCTAGACTGTCC  550

seq1  ACTTAGAGGGGTGCCAGTGAACTGTTGGCGGGCAGGGAACACCATTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGGGGTGCCAGTGAACTGTTGGCGGGCAGGGAACACCATTCTGA  600

seq1  AAGCTTTGTGGCATCACAGTACAACTTCCTCACTTCTTGGTGGCTGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGTGGCATCACAGTACAACTTCCTCACTTCTTGGTGGCTGGAGC  650

seq1  ACAGCCATGAACATTTGTGCTAAAGAAGCTGGAGCCTTGAGCCTACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGAACATTTGTGCTAAAGAAGCTGGAGCCTTGAGCCTACAACA  700

seq1  TACAGAGATTCCCTTGTGAAGCCCCATCTTGCACATTGCCCTGTGGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGATTCCCTTGTGAAGCCCCATCTTGCACATTGCCCTGTGGGTTA  750

seq1  GGACTTGAATTTTCTGTTACAAGCCACACAAAGCCTCAGGTATATTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGAATTTTCTGTTACAAGCCACACAAAGCCTCAGGTATATTCAAG  800

seq1  TTGCAGATGTCAGTTC-TATCCCCAAGGCCTGCTCAGCAATGTGAATGCC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGCAGATGTCAGTTCTTATCCCCAAGGCCTGCTCAGCAATGTGAATGCC  850

seq1  CAACAGAAAAGA-TTTCATTTTCAAAGGCTTC-TTCAATGTATGTCACCC  897
      |||||||||||| |||||||||| |||||||| |||||||||||||||||
seq2  CAACAGAAAAGATTTTCATTTTC-AAGGCTTCTTTCAATGTATGTCACCC  899

seq1  ACTA-TTTAGGAA-TTACTCATGAATTAGGCAGACGGTCATGTATGAAAA  945
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTAGGAATTTACTCATGAATTAGGCAGACGGTCATGTATGAAAA  949

seq1  GTCAGTACTAGTCAGTTAAAGAATTA-TTAAGTGGTGACCAATGG-TGAA  993
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GTCAGTACTAGTCAGTTAAAGAATTATTTAAGTGGTGACCAATGGTTGAA  999

seq1  CTCAAGAGAGCGCTAGTCAACATGTCTCGGAATCCATACAGGATACAG-A  1042
      ||  |||||||||||||||||||||||||| || |||||||||||||| |
seq2  CTTCAGAGAGCGCTAGTCAACATGTCTCGGGAT-CATACAGGATACAGAA  1048

seq1  CACTGCTGTCAGGGACCTGCAGTTATGACAAC-TGTGAAGGCGTGAGCAG  1091
      |||||||||||||   |||||||||||||| | |||  ||||||||||||
seq2  CACTGCTGTCAGG--ACTGCAGTTATGACAGCTTGTTGAGGCGTGAGCAG  1096

seq1  ACACATCTATGTACATGGGCAATCGGGAATCTCAATCCCTTGGACTG  1138
      |||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  ACACATCTATGTTCATGGGCAATCGGGAATCTCAAT-CCTTGGACTG  1142