BAC Information

Click to search

BAC

Clone NameB6Ng01-254N07
Chromosome19 (Build37)
Map Location 11,260,772 - 11,388,992
singlet/doubletdoublet
Overlap geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276
Upstream geneFads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik
Downstream geneMs4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N07.bB6Ng01-254N07.g
ACCGA061196GA061197
length1,1551,032
definitionB6Ng01-254N07.b B6Ng01-254N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,387,856 - 11,388,992)(11,260,772 - 11,261,787)
sequence
gaattctcatattctatgactcaatgactggaattctgtggttctaatac
tatgtaactgctaagggcccgtagtagaggactcaatggggccctaggga
agaaatacatcatgattattgctacaatatcctttcactcctctcctaac
aaagctcttccactgaatcatggagtcaccatctgaggagaagagaagga
accatgtcatcactatagacccaaatgaaactgtcttgactgcctatcca
tatagacctcatagttctctgctggatttccttaagggggagccaaaact
tttaggggtgagttctgccttatcatgggtcatccagaggggagagaagg
tgttaatcctccatgtttgtctacagaggtggttttgtgaaataacattc
agagaatgagttagtctccctggcctttcttctgcaatatatccttccta
cagtgaagggagttcacaaatctccaccttcctagagcagctcttcacaa
ctagtggttgctggtgggggtggatcagtaattttcttcaatagtgtagc
tactggtaggttttgcccatgctccaataaacccatgaaataagcacctc
taattaaagtcagtgagtcgccaaaaggacttgaaaatgaaagaggagtt
ggaaagaagaaagagtcagcatgggtgggagagggtaagagagggtaaca
gggtaaatgtgataaatacattgaatacatatacaaaattttcataaaac
ttaaaagcagcacatcgaagtctatttttttgtgcaagaaaatcgtatcc
caatgagaagagtcactacgtgccacttccctggattttgattaaaagaa
tgagaaacaaaagatcttctttagaagtacaatgcacagtatgtctttgg
gtagaatatgttagctcttcggctgtcaatgcagaatgcttctgaggtga
tggtattaagtaacctcctcaagagttggctgatctaataacctcaccta
acctccaaggaagtactagggaatgtttccttgttgggttgggagaagct
agttcttgaccctttgatactacacaggaaagcatgaactatatattttc
tctaatacccttcttgaaggaaatgtacccccaggaatggtatctatacc
ttatg
gaattccatggtatgggtgttgggaatcaaaccttggtcctctgaaagag
caggaagtcccctaaaccatggaactgtctctccatcttttctgttttag
cgattttggcaaaggttacttttgtgaaaagtactagacatggtccatac
ttttaaagattaacatgaagttttcatataatatgttgatcatatttatc
tccctccccaggttctccatccaattcgatgttatttcttcctcagtcaa
acaagcaagtaaacaaaaacatcaccttaaaacagaaaggtaaaataaaa
caagccaacagcaccacagtaaaagcatgcaaaaaaaagcaaaaaaaaaa
aaaacaaaacaaaacaaaaaaaaaaaacaacaacaacaaaacccaaaaaa
cccatggagtctgttttgtgttgtccagctattccctagtatgagacctg
cccaggagtgtgacggatatacccagtaactgatatactttattgaagaa
aattgatttttttgtttctttcttggcaggcgtcaattgcaaatagcttc
ttggcaggggtgggagaaggtgtctacttccctttttcaatgctgagatg
gaaaatgacaagtctggcttgagcttgtacaggtcttgtgcatgctgcca
cagtctctgtgggttcatatgtgcagtatctctgttgtatctgggcatgc
tgtttccttggaggtgccaaccacttctggctctttacatttcttctacc
aacgtccttctgcagagatttctctcatgctccacacttttatttggggt
aggccaaactttgaagcttacaccattccaccaagagatcgatcctgtac
agttggctctttgatcttcacagaagagatggcactgctaggtatgggtt
accactgaggtaagaacccgtcttcaggaccgcagttgcggaatggtctt
ccggatcattttaaatccaaagattgacccttgttcttttttattgaaaa
tattgaagtgaggctagaagaagatgatccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11387856_11388992
seq2: B6Ng01-254N07.b_49_1203 (reverse)

seq1  CATAAGGTATTGCTAC--ATCCTGGGG--TCACTTCC-TCAAGAAGGTAT  45
      |||||||||| | |||   ||||||||   || |||| |||||||||   
seq2  CATAAGGTATAGATACCATTCCTGGGGGTACATTTCCTTCAAGAAGGGTA  50

seq1  TTAGAAAAATTATATAGTTTCCTGCTTCCCTGTGCTAGTCATCAAA-GGT  94
      ||||| ||| ||||||| ||| ||||| |||||| |||| |||||| |||
seq2  TTAGAGAAAATATATAG-TTCATGCTTTCCTGTG-TAGT-ATCAAAGGGT  97

seq1  C-AGAACTAGC-TCTCCCAACCC-ACAAAGAAACA-TCCCTAGTACCTCC  140
      | ||||||||| ||||||||||| |||| |||||| |||||||||| |||
seq2  CAAGAACTAGCTTCTCCCAACCCAACAAGGAAACATTCCCTAGTACTTCC  147

seq1  TTGGA-GTTAGGTGA-GTTATTAGATCAGCC-ACTCTTGAG--AGTTACT  185
      ||||| ||||||||| ||||||||||||||| |||||||||   ||||||
seq2  TTGGAGGTTAGGTGAGGTTATTAGATCAGCCAACTCTTGAGGAGGTTACT  197

seq1  TAAT-CCATCACCTCAGAAGCATTTCTGCATTGACAGCCG-AGAGCTAAC  233
      |||| ||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TAATACCATCACCTCAGAAGCA-TTCTGCATTGACAGCCGAAGAGCTAAC  246

seq1  ATA-TCTACCC-AAGACATACTGTGCATTGTACTTCTAAAG-AGATCTTT  280
      ||| ||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  ATATTCTACCCAAAGACATACTGTGCATTGTACTTCTAAAGAAGATCTTT  296

seq1  TGTTTCTCATTCTTTTAATCAAAATCCAGGGAAGTGGCACGTAGTGACTC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCATTCTTTTAATCAAAATCCAGGGAAGTGGCACGTAGTGACTC  346

seq1  TTCTCATT-GGATACGATTTTCTTGCAC-AAAAAATTGACTTCGATGTGC  378
      |||||||| ||||||||||||||||||| ||||||| |||||||||||||
seq2  TTCTCATTGGGATACGATTTTCTTGCACAAAAAAATAGACTTCGATGTGC  396

seq1  TGCTTTTAAGTTTTATGAAAATTTTGTATATGTATTCAATGTATTTATCA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAGTTTTATGAAAATTTTGTATATGTATTCAATGTATTTATCA  446

seq1  CATTTACCCTGTTACCCTCTCTTACCCTCTCCCACCCATGCTGACTCTTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCCTGTTACCCTCTCTTACCCTCTCCCACCCATGCTGACTCTTT  496

seq1  CTTCTTTCCAACTCCTCTTTCATTTTCAAGTCCTTTTGGCGACTCACTGA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCAACTCCTCTTTCATTTTCAAGTCCTTTTGGCGACTCACTGA  546

seq1  CTTTAATTAGAGGTGCTTATTTCATGGGTTTATTGGAGCATGGGCAAAAC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTAGAGGTGCTTATTTCATGGGTTTATTGGAGCATGGGCAAAAC  596

seq1  CTACCAGTAGCTACACTATTGAAGAAAATTACTGATCCACCCCCACCAGC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTAGCTACACTATTGAAGAAAATTACTGATCCACCCCCACCAGC  646

seq1  AACCACTAGTTGTGAAGAGCTGCTCTAGGAAGGTGGAGATTTGTGAACTC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTAGTTGTGAAGAGCTGCTCTAGGAAGGTGGAGATTTGTGAACTC  696

seq1  CCTTCACTGTAGGAAGGATATATTGCAGAAGAAAGGCCAGGGAGACTAAC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGTAGGAAGGATATATTGCAGAAGAAAGGCCAGGGAGACTAAC  746

seq1  TCATTCTCTGAATGTTATTTCACAAAACCACCTCTGTAGACAAACATGGA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTGAATGTTATTTCACAAAACCACCTCTGTAGACAAACATGGA  796

seq1  GGATTAACACCTTCTCTCCCCTCTGGATGACCCATGATAAGGCAGAACTC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAACACCTTCTCTCCCCTCTGGATGACCCATGATAAGGCAGAACTC  846

seq1  ACCCCTAAAAGTTTTGGCTCCCCCTTAAGGAAATCCAGCAGAGAACTATG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAAAAGTTTTGGCTCCCCCTTAAGGAAATCCAGCAGAGAACTATG  896

seq1  AGGTCTATATGGATAGGCAGTCAAGACAGTTTCATTTGGGTCTATAGTGA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATATGGATAGGCAGTCAAGACAGTTTCATTTGGGTCTATAGTGA  946

seq1  TGACATGGTTCCTTCTCTTCTCCTCAGATGGTGACTCCATGATTCAGTGG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGTTCCTTCTCTTCTCCTCAGATGGTGACTCCATGATTCAGTGG  996

seq1  AAGAGCTTTGTTAGGAGAGGAGTGAAAGGATATTGTAGCAATAATCATGA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTGTTAGGAGAGGAGTGAAAGGATATTGTAGCAATAATCATGA  1046

seq1  TGTATTTCTTCCCTAGGGCCCCATTGAGTCCTCTACTACGGGCCCTTAGC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTTCCCTAGGGCCCCATTGAGTCCTCTACTACGGGCCCTTAGC  1096

seq1  AGTTACATAGTATTAGAACCACAGAATTCCAGTCATTGAGTCATAGAATA  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATAGTATTAGAACCACAGAATTCCAGTCATTGAGTCATAGAATA  1146

seq1  TGAGAATTC  1137
      |||||||||
seq2  TGAGAATTC  1155

seq1: chr19_11260772_11261787
seq2: B6Ng01-254N07.g_73_1104

seq1  GAATTCCATGGTATGGGTGTTGGGAATCAAACCTTGGTCCTCTGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTATGGGTGTTGGGAATCAAACCTTGGTCCTCTGAAAGAG  50

seq1  CAGGAAGTCCCCTAAACCATGGAACTGTCTCTCCATCTTTTCTGTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCCCCTAAACCATGGAACTGTCTCTCCATCTTTTCTGTTTTAG  100

seq1  CGATTTTGGCAAAGGTTACTTTTGTGAAAAGTACTAGACATGGTCCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTGGCAAAGGTTACTTTTGTGAAAAGTACTAGACATGGTCCATAC  150

seq1  TTTTAAAGATTAACATGAAGTTTTCATATAATATGTTGATCATATTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATTAACATGAAGTTTTCATATAATATGTTGATCATATTTATC  200

seq1  TCCCTCCCCAGGTTCTCCATCCAATTCGATGTTATTTCTTCCTCAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCAGGTTCTCCATCCAATTCGATGTTATTTCTTCCTCAGTCAA  250

seq1  ACAAGCAAGTAAACAAAAACATCACCTTAAAACAGAAAGGTAAAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGTAAACAAAAACATCACCTTAAAACAGAAAGGTAAAATAAAA  300

seq1  CAAGCCAACAGCACCACAGTAAAAGCATGCAAAAAAAAGCAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAACAGCACCACAGTAAAAGCATGCAAAAAAAAGCAAAAAAAAAA  350

seq1  AAAACAAAACAAAACAAAAAAAAAAAACAACAACAACAAAACCCAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAAAAAAAAAACAACAACAACAAAACCCAAAAAA  400

seq1  CCCATGGAGTCTGTTTTGTGTTGTCCAGCTATTCCCTAGTATGAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGTCTGTTTTGTGTTGTCCAGCTATTCCCTAGTATGAGACCTG  450

seq1  CCCAGGAGTGTGACGGATATACCCAGTAACTGATATACTTTATTGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTGTGACGGATATACCCAGTAACTGATATACTTTATTGAAGAA  500

seq1  AATTGATTTTTTTGTTTCTTTCTTGGCAGGCGTCAATTGCAAATAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTTTTGTTTCTTTCTTGGCAGGCGTCAATTGCAAATAGCTTC  550

seq1  TTGGCAGGGGTGGGAGAAGGTGTCTACTTCCCTTTTTCAATGCTGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGGGTGGGAGAAGGTGTCTACTTCCCTTTTTCAATGCTGAGATG  600

seq1  GAAAATGACAAGTCTGGCTTGAGCTTGTACAGGTCTTGTGCATGCTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACAAGTCTGGCTTGAGCTTGTACAGGTCTTGTGCATGCTGCCA  650

seq1  CAGTCTCTGTGGGTTCATATGTGCAGTATCTCTGTTGTATCTGGGCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGTGGGTTCATATGTGCAGTATCTCTGTTGTATCTGGGCATGC  700

seq1  TGTTTCCTTGGAGGTGCCAACCACTTCTGGCTC-TTACATTCTTTCTACC  749
      ||||||||||||||||||||||||||||||||| |||||||  |||||||
seq2  TGTTTCCTTGGAGGTGCCAACCACTTCTGGCTCTTTACATTTCTTCTACC  750

seq1  -ACGT-CTTCTGCAGAGATTTCTCTCATGCTCCACAC-TTTATTT-GGGT  795
       |||| ||||||||||||||||||||||||||||||| ||||||| ||||
seq2  AACGTCCTTCTGCAGAGATTTCTCTCATGCTCCACACTTTTATTTGGGGT  800

seq1  AGGCCAAACTTTGAAGCTAACACAATTCCACCAGGAGATCGATCCTGTAC  845
      |||||||||||||||||| |||| ||||||||| ||||||||||||||||
seq2  AGGCCAAACTTTGAAGCTTACACCATTCCACCAAGAGATCGATCCTGTAC  850

seq1  AGTTGGCTC-TTGATCTTCACAGAAGAGATGGCACTGCTAAGGATGGGT-  893
      ||||||||| |||||||||||||||||||||||||||||| | |||||| 
seq2  AGTTGGCTCTTTGATCTTCACAGAAGAGATGGCACTGCTAGGTATGGGTT  900

seq1  -ACACTGAGGGTAAGAA-CCGTC-TCAGGACCGCAG-TGCGGAAGTGTCT  939
        |||||| |||||||| ||||| |||||||||||| |||||||  ||||
seq2  ACCACTGA-GGTAAGAACCCGTCTTCAGGACCGCAGTTGCGGAATGGTCT  949

seq1  TCC-GATCATTTTAGATCCAAAGATAGACC----TTGTCTTTTATTTAAA  984
      ||| |||||||||| |||||||||| ||||    || | ||||||| |||
seq2  TCCGGATCATTTTAAATCCAAAGATTGACCCTTGTTCTTTTTTATTGAAA  999

seq1  ATATCGAAGTGGAGGCTAGA--GAGATGATCCAG  1016
      |||| ||||| |||||||||   |||||||||||
seq2  ATATTGAAGT-GAGGCTAGAAGAAGATGATCCAG  1032