BAC Information

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BAC

Clone NameB6Ng01-256P02
Chromosome19 (Build37)
Map Location 40,302,732 - 40,416,483
singlet/doubletdoublet
Overlap genePdlim1, LOC435599, Sorbs1, A930028N01Rik
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256P02.bB6Ng01-256P02.g
ACCGA062772GA062773
length1,1371,065
definitionB6Ng01-256P02.b B6Ng01-256P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,302,732 - 40,303,856)(40,415,416 - 40,416,483)
sequence
gaattcatgagtgggcaagcaaagctcacctggagccttctggtgaagtg
ccagcatcacggcaactggggagtgcttactgtggtcatagcaacggttg
tgttgcacactttgtgatgtctgagcctagagcacaggtcagaaactagc
ctagggttgaggtggctaccctggagcctctcttgaggtcactagccagg
gttaagaaagagctgttgtgccgggcagtggtggcgcatgcctttaatcc
cagcacttgggaggcagaggcaggtggatttctgagttcaaggccagcct
ggtctaccgaataagttccgggacagccagggctatacagagaagcctgt
ctcaaaaacaaaaaacaaaaaacaaaacaaacaaacaaacaaacaaacaa
acaaaaaacttgattgttgaaaggccatctgccctaaggcaagaacaaac
tcaggtgacccactgggaaggaaggtccccatcttcggtggcttacagat
ccattttccttctgtggcctccagaaattcttcctcacctgccaccttgg
gaacaaggtgtgtgaatgagaagagctctcacaaggtcacactgactgca
ccctcaactccctaatacatgcatggctggaaacagctggccagatgcaa
agctcttaaaacaactcccacatgccacaagggattgatatctaggatag
ccaataaactcaaaatatcagacaccgagaacaaaacccccaccatcgaa
tgaatgaatacatgagccacagaacagactgcctgtaacacaggaaaatg
gtgctgagcatccgtggtcatcaggaaatgaaaattaaaaccacaatgag
gttgcatccccatctctctcagaatggtttgtataaaaacaaacagcaaa
cagatgctgacaagaatgtacaaaagcacccttgcacacacagctggcgg
aaatgaaaattggaggcagccgctatgaaatccgtaatcagttatgaagg
gttccacaaaaaaattaaaattaaaatagaaccacatgaaggaggtcaac
attagccagatacttgggttcatctatgtaattattgtgacaccttgcac
ggaatccattaggcacctatagagtcacgatgtccat
gaattctgtgacaaagtaagaaaggtgtgggggtaacacgtgttaaaaag
tctacttccctgacagccactgagtgtattaagaggtaaaaatgaacggt
cgctgctctgtcattgactttgcagagcacatacctcacatatgtggaag
acctgctgttgacaggggaaacacagtcagagccagttcttttcttttgg
agaggtagtacagagaccaagaggacccaccttttactctccccttccct
tcagtttctacagaaattgatttgatgtctagccacaaactcaaggcaat
gtttctcaatagtaatccctcgaatgtgtctgtagaattaacggacatga
aacttgcatgcaatctgtggggcttttaatgatctcctgtgtctgatctc
cccggaggtcatagcatggtagatctcaagtgtacacaggcagagtcaga
gaatccactctgtgtgagagaagttcagagttagaagtttctggaagttt
gcttagctctcactgcacacaaacccttgggaagcctacagcattctcct
ggcagattttcagcgctctgattgtccatgaaggggttaaagaacaaaca
tcgtgacctctgacctgccagggggagggggcggagcctgcctctagcgt
tacttctgccgcctaactctacttacattatgaaaggccagttgagctgc
aagcatgaaatggtcacagcactgtctgaattcctactctagatgccaat
gaatcctactgtggatgccgctgccacacaccagagggtcacccttttag
gtcagcctctactggacagacttacagatttacacatttattaacatgca
atgattttttttctatagtaggaaagactatttaaaaatgtgaaaatctc
cagggtcagtctttgtttgaagagaacaagaaagaatagagttttaattt
gtttaaatccgtattgatgcttcccttccctccccccccccccttttagt
ttaaatttttagtattggaactcaagggtggatttggctctgaacttaat
aactttctagtcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40302732_40303856
seq2: B6Ng01-256P02.b_48_1184

seq1  GAATTCATGAGTGGGCAAGCAAAGCTCACCTGGAGCCTTCTGGTGAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTGGGCAAGCAAAGCTCACCTGGAGCCTTCTGGTGAAGTG  50

seq1  CCAGCATCACGGCAACTGGGGAGTGCTTACTGTGGTCATAGCAACGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCACGGCAACTGGGGAGTGCTTACTGTGGTCATAGCAACGGTTG  100

seq1  TGTTGCACACTTTGTGATGTCTGAGCCTAGAGCACAGGTCAGAAACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCACACTTTGTGATGTCTGAGCCTAGAGCACAGGTCAGAAACTAGC  150

seq1  CTAGGGTTGAGGTGGCTACCCTGGAGCCTCTCTTGAGGTCACTAGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTTGAGGTGGCTACCCTGGAGCCTCTCTTGAGGTCACTAGCCAGG  200

seq1  GTTAAGAAAGAGCTGTTGTGCCGGGCAGTGGTGGCGCATGCCTTTAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAGAGCTGTTGTGCCGGGCAGTGGTGGCGCATGCCTTTAATCC  250

seq1  CAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCT  300

seq1  GGTCTACCGAATAAGTTCCGGGACAGCCAGGGCTATACAGAGAAGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACCGAATAAGTTCCGGGACAGCCAGGGCTATACAGAGAAGCCTGT  350

seq1  CTCAAAAACAAAAAACAAAAAACAAAACAAACAAACAAACAAACAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACAAAAAACAAAAAACAAAACAAACAAACAAACAAACAAACAA  400

seq1  ACAAAAAACTTGATTGTTGAAAGGCCATCTGCCCTAAGGCAAGAACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACTTGATTGTTGAAAGGCCATCTGCCCTAAGGCAAGAACAAAC  450

seq1  TCAGGTGACCCACTGGGAAGGAAGGTCCCCATCTTCGGTGGCTTACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGACCCACTGGGAAGGAAGGTCCCCATCTTCGGTGGCTTACAGAT  500

seq1  CCATTTTCCTTCTGTGGCCTCCAGAAATTCTTCCTCACCTGCCACCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCTTCTGTGGCCTCCAGAAATTCTTCCTCACCTGCCACCTTGG  550

seq1  GAACAAGGTGTGTGAATGAGAAGAGCTCTCACAAGGTCACACTGACTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGTGTGTGAATGAGAAGAGCTCTCACAAGGTCACACTGACTGCA  600

seq1  CCCTCAACTCCCTAATACATGCATGGCTGGAAACAGCTGGCCAGATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACTCCCTAATACATGCATGGCTGGAAACAGCTGGCCAGATGCAA  650

seq1  AGCTCTTAAAACAACTCCCACATGCCACAAGGGATTGATATCTAGGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAAAACAACTCCCACATGCCACAAGGGATTGATATCTAGGATAG  700

seq1  CCAATAAACTCAAAATATCAGACACCGAGAACAAAACCCCCACCATCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAACTCAAAATATCAGACACCGAGAACAAAACCCCCACCATCGAA  750

seq1  TGAATGAATACATGAGCCACAGAACAGACTGCCTGTAACACAGGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATACATGAGCCACAGAACAGACTGCCTGTAACACAGGAAAATG  800

seq1  GTGCTGAGCATCCGTGGTCATCAGGGAAATGAAAATTAAAACCACAATGA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGCTGAGCATCCGTGGTCATCA-GGAAATGAAAATTAAAACCACAATGA  849

seq1  GGTTGCAT-CCCATCTCTCTCAGAATGG-TTGTATAAAAACAAACAGC-A  897
      |||||||| ||||||||||||||||||| ||||||||||||||||||| |
seq2  GGTTGCATCCCCATCTCTCTCAGAATGGTTTGTATAAAAACAAACAGCAA  899

seq1  ACAGATGCTGACAAGAATGTACAAAAGCACCCTTGCACACACAGCTGGCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTGACAAGAATGTACAAAAGCACCCTTGCACACACAGCTGGCG  949

seq1  GAAATGAAAA-TGGAGGCAGCCGCTATTGAAATCCGTAATCAG-TATGAA  995
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  GAAATGAAAATTGGAGGCAGCCGCTA-TGAAATCCGTAATCAGTTATGAA  998

seq1  -GGTTCCACAAAAAAAT--AAAATAAAATAGAA-CACATGAAAGGAAGGT  1041
       ||||||||||||||||  ||| |||||||||| ||||||||  | ||||
seq2  GGGTTCCACAAAAAAATTAAAATTAAAATAGAACCACATGAA--GGAGGT  1046

seq1  CAACA-TAG-CAGATACTTGG--TCATCTATGTA--TATTGTGACAC--T  1083
      ||||| ||| |||||||||||  |||||||||||  |||||||||||  |
seq2  CAACATTAGCCAGATACTTGGGTTCATCTATGTAATTATTGTGACACCTT  1096

seq1  GCACG--AT-CAATAGCCAACTTATAGAGTCAACCAGATGTCCAT  1125
      |||||  || || ||| | || ||||||||||    |||||||||
seq2  GCACGGAATCCATTAGGC-ACCTATAGAGTCA---CGATGTCCAT  1137

seq1: chr19_40415416_40416483
seq2: B6Ng01-256P02.g_69_1133 (reverse)

seq1  CCTGACTAGGAAGT--ATAAGTTTCAAGAG-CAAATCAACCCTTGAGTCT  47
      ||||||||| ||||   ||||||   |||| |||||| ||||||||||  
seq2  CCTGACTAGAAAGTTATTAAGTT--CAGAGCCAAATCCACCCTTGAGTTC  48

seq1  CAATACTAAAAATTTTAAACTAAAAGGGGGGGGGGGGAGGGGAGGGAAGC  97
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  CAATACTAAAAA-TTTAAACTAAAAGGGGGGGGGGGGAGGGAAGGGAAGC  97

seq1  ATCAATAACGAATTTAAACAAATTAAAAACTCTAATTCTTTCTTGTTCTC  147
      |||||| ||| ||||||||||||| |||||||| ||||||||||||||||
seq2  ATCAAT-ACGGATTTAAACAAATT-AAAACTCT-ATTCTTTCTTGTTCTC  144

seq1  TTCAAACAAAGACTGACCCTGGAGATTTTCACATTTTTTAAATAGTCTTT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCAAACAAAGACTGACCCTGGAGATTTTCACA-TTTTTAAATAGTCTTT  193

seq1  CCTACTATAG-AAAAAAATCATTGCATGTTAATAAATGTGTAAATCTGTA  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATAGAAAAAAAATCATTGCATGTTAATAAATGTGTAAATCTGTA  243

seq1  AGTCTGTCCAGTAGAGGCTGACCTAAAAGGGTGACCCTCTGGTGTGTGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCCAGTAGAGGCTGACCTAAAAGGGTGACCCTCTGGTGTGTGGC  293

seq1  AGCGGCATCCACAGTAGGATTCATTGGCATCTAGAGTAGGAATTCAGACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCATCCACAGTAGGATTCATTGGCATCTAGAGTAGGAATTCAGACA  343

seq1  GTGCTGTGACCATTTCATGCTTGCAGCTCAACTGGCCTTTCATAATGTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGACCATTTCATGCTTGCAGCTCAACTGGCCTTTCATAATGTAA  393

seq1  GTAGAGTTAGGCGGCAGAAGTAACGCTAGAGGCAGGCTCCGCCCCCTCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTAGGCGGCAGAAGTAACGCTAGAGGCAGGCTCCGCCCCCTCCC  443

seq1  CCTGGCAGGTCAGAGGTCACGATGTTTGTTCTTTAACCCCTTCATGGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGTCAGAGGTCACGATGTTTGTTCTTTAACCCCTTCATGGACA  493

seq1  ATCAGAGCGCTGAAAATCTGCCAGGAGAATGCTGTAGGCTTCCCAAGGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCGCTGAAAATCTGCCAGGAGAATGCTGTAGGCTTCCCAAGGGT  543

seq1  TTGTGTGCAGTGAGAGCTAAGCAAACTTCCAGAAACTTCTAACTCTGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCAGTGAGAGCTAAGCAAACTTCCAGAAACTTCTAACTCTGAAC  593

seq1  TTCTCTCACACAGAGTGGATTCTCTGACTCTGCCTGTGTACACTTGAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACACAGAGTGGATTCTCTGACTCTGCCTGTGTACACTTGAGAT  643

seq1  CTACCATGCTATGACCTCCGGGGAGATCAGACACAGGAGATCATTAAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGCTATGACCTCCGGGGAGATCAGACACAGGAGATCATTAAAAG  693

seq1  CCCCACAGATTGCATGCAAGTTTCATGTCCGTTAATTCTACAGACACATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGATTGCATGCAAGTTTCATGTCCGTTAATTCTACAGACACATT  743

seq1  CGAGGGATTACTATTGAGAAACATTGCCTTGAGTTTGTGGCTAGACATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGATTACTATTGAGAAACATTGCCTTGAGTTTGTGGCTAGACATCA  793

seq1  AATCAATTTCTGTAGAAACTGAAGGGAAGGGGAGAGTAAAAGGTGGGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTTCTGTAGAAACTGAAGGGAAGGGGAGAGTAAAAGGTGGGTCC  843

seq1  TCTTGGTCTCTGTACTACCTCTCCAAAAGAAAAGAACTGGCTCTGACTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTCTGTACTACCTCTCCAAAAGAAAAGAACTGGCTCTGACTGT  893

seq1  GTTTCCCCTGTCAACAGCAGGTCTTCCACATATGTGAGGTATGTGCTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCTGTCAACAGCAGGTCTTCCACATATGTGAGGTATGTGCTCTG  943

seq1  CAAAGTCAATGACAGAGCAGCGACCGTTCATTTTTACCTCTTAATACACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAATGACAGAGCAGCGACCGTTCATTTTTACCTCTTAATACACT  993

seq1  CAGTGGCTGTCAGGGAAGTAGACTTTTTAACACGTGTTACCCCCACACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTGTCAGGGAAGTAGACTTTTTAACACGTGTTACCCCCACACCT  1043

seq1  TTCTTACTTTGTCACAGAATTC  1068
      ||||||||||||||||||||||
seq2  TTCTTACTTTGTCACAGAATTC  1065