BAC Information

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BAC

Clone NameB6Ng01-257O16
Chromosome19 (Build37)
Map Location 29,553,837 - 29,632,706
singlet/doubletdoublet
Overlap geneC030046E11Rik
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Downstream geneD19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257O16.bB6Ng01-257O16.g
ACCGA063492GA063493
length1,1061,077
definitionB6Ng01-257O16.b B6Ng01-257O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,631,632 - 29,632,706)(29,553,837 - 29,554,919)
sequence
gaattctcaacataactgacatttcctcttctgatcttatggaggacaaa
aagcactagaataacatactttacagctgaaagaaaaaaggttaaagaag
aacagaacatctggacaaagtactcttaaaaaactgacagagaaagtaag
aggttcagggatctaaaataattaagggtttgtcataggcgagagacact
agatgaaaccttttggggtgaatgaagagaggaaacagtaattcaaatca
tgttaaaaacattaaagctggaaatatgcttttgctttagaaaagcattt
atttctgtatgatttgaaaaacaggtgaataaaacaatacgtgtgaatct
gtgccaatatgcacacaatatgtaaacatctctgtgacaacagcaccata
agaaggtgacaaataaaaatgtctggtctgggaccactggtgttcaatgg
ttactcaatcagactaagcagttatatgtgcaaaatgttaactattcaag
ataaccactaagaaactagctacaatggacaaagagaacaaaccacaagt
gaatcaagatacacaatgaatgaagaacaaagaaaatgatagcagtaatc
aggaagaaacactcctgcctgtgcccatcgatctcagcagagggttccaa
ggtccccagaggactctccacgctgcacgcaccctagcacacccaggatc
ttgagatcactggtgaatggaacgcaacatctgttccaaaaaacccagag
ggtcttgtgcaagcagctacagggtcaaaggacaaaggcaggccctagca
cacccagaatcttgggatcactgagaccagtctactcaggagagcacgtg
ggcagcagaagcaacagagcttcgtggacagggtctcttcgggccttcat
cctcagccaggagacagagctgagacccagacccctgggcaccttccctg
ccagaggagagtcagcctccaaggaggactctgtccccaggaatcaggag
tggatctgagctccaggcttctgtgcacttcctgtagaggaggagcttgc
tgcagagtgtttctgacactgggactcagaaagagttgtctcccaggagt
gctgac
gaattcaccagagcaggagaaaggagtaggaaagtcagatataatagaat
aattatgcagaccaaggccaaccgaaaagcagtcacgagcagatgaattc
tatacaactgttgtccaaggctaagattaggagaaatgggaacaactgtt
gtctacaaaagacagctgtgagctactgacatgtctccaccctggcctac
tgcaggcagtcccttatttcaggtggcaggtcccctggagggatgtaact
actccttctcaggttcccaggcaccatcctttttcacaaggagctgccac
aggcttctgagatgtctccatccctttctgcccctttccctctgaaagag
acgggaatcctggagtttatgagaaatggagacacccctttcgaggccac
tgctcatatgtggttgtatcagagtttcaagcaaaagaaagttagtgtct
gcagatgggaaggcgggacttccttcattatgaaggggagatcagggaca
gactcaggacaagtgtgctcaaacattcactcctagcctgagtccaacgc
cttccaagtttctgttctccgtgcatctgccagctgcggaatgcttggtt
tgcttctgaatccttagtaatatttagttattcctgcaaccagaaagaac
acgatatattttgaacgcctgcttagaaccccctactggtgctctgccta
cggttttaggggaaatctctgagcttgctgctttcttcctgcacacacac
taatacagaagcagccacatcacctcgattcctttatgaccttatcttta
ctagaacaatgctccaatataacagctactcggtttccaaaaattctact
tctccatcaagcctccctcgggtctcagaagctacgaggaagaggaggca
ggaaaaccgtaaatcggtggggatggacgacaccaaggaaataagacctt
ctagatagagagcagaactgatgctcgtagaagctcacagacaccgtggc
agcacgcacagacctgcacagtcccagtactgagaggggactggaacacg
agcccatccctcaacgcagatgttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29631632_29632706
seq2: B6Ng01-257O16.b_90_1158 (reverse)

seq1  GTCAGCACTCCTGGGAGACCAACTCTCTCCTGAGTCCCAGTGGTCAG-AA  49
      |||||||||||||||||| ||||||| | |||||||||||| ||||| ||
seq2  GTCAGCACTCCTGGGAGA-CAACTCT-TTCTGAGTCCCAGT-GTCAGAAA  47

seq1  CACTCTGCAGGCAAGCT-CTCCTCTTACAGGGAAGGTGCACAGAAGCCTG  98
      ||||||||| ||||||| |||||| ||||||  | |||||||||||||||
seq2  CACTCTGCA-GCAAGCTCCTCCTC-TACAGG--AAGTGCACAGAAGCCTG  93

seq1  GAGCTCAGATCCACCTCCTGATTCCTGGGGACAGAGTCCTCCTTGGAGGC  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGATCCA-CTCCTGATTCCTGGGGACAGAGTCCTCCTTGGAGGC  142

seq1  TGACTCTCCTCTGGCAGGGAAGGTGCCCAGGGGTCTGGGTCTCAGCTCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCCTCTGGCAGGGAAGGTGCCCAGGGGTCTGGGTCTCAGCTCTG  192

seq1  TCTCCTGGCTGAGGATGAAGGCCCGAAGAGACCCTGTCCACGAAGCTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCTGAGGATGAAGGCCCGAAGAGACCCTGTCCACGAAGCTCTG  242

seq1  TTGCTTCTGCTGCCCACGTGCTCTCCTGAGTAGACTGGTCTCAGTGATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGCTGCCCACGTGCTCTCCTGAGTAGACTGGTCTCAGTGATCC  292

seq1  CAAGATTCTGGGTGTGCTAGGGCCTGCCTTTGTCCTTTGACCCTGTAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCTGGGTGTGCTAGGGCCTGCCTTTGTCCTTTGACCCTGTAGCT  342

seq1  GCTTGCACAAGACCCTCTGGGTTTTTTGGAACAGATGTTGCGTTCCATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACAAGACCCTCTGGGTTTTTTGGAACAGATGTTGCGTTCCATTC  392

seq1  ACCAGTGATCTCAAGATCCTGGGTGTGCTAGGGTGCGTGCAGCGTGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGATCTCAAGATCCTGGGTGTGCTAGGGTGCGTGCAGCGTGGAGA  442

seq1  GTCCTCTGGGGACCTTGGAACCCTCTGCTGAGATCGATGGGCACAGGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGGGACCTTGGAACCCTCTGCTGAGATCGATGGGCACAGGCAG  492

seq1  GAGTGTTTCTTCCTGATTACTGCTATCATTTTCTTTGTTCTTCATTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTCTTCCTGATTACTGCTATCATTTTCTTTGTTCTTCATTCATT  542

seq1  GTGTATCTTGATTCACTTGTGGTTTGTTCTCTTTGTCCATTGTAGCTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTTGATTCACTTGTGGTTTGTTCTCTTTGTCCATTGTAGCTAGT  592

seq1  TTCTTAGTGGTTATCTTGAATAGTTAACATTTTGCACATATAACTGCTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGGTTATCTTGAATAGTTAACATTTTGCACATATAACTGCTTA  642

seq1  GTCTGATTGAGTAACCATTGAACACCAGTGGTCCCAGACCAGACATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTGAGTAACCATTGAACACCAGTGGTCCCAGACCAGACATTTTT  692

seq1  ATTTGTCACCTTCTTATGGTGCTGTTGTCACAGAGATGTTTACATATTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACCTTCTTATGGTGCTGTTGTCACAGAGATGTTTACATATTGT  742

seq1  GTGCATATTGGCACAGATTCACACGTATTGTTTTATTCACCTGTTTTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATTGGCACAGATTCACACGTATTGTTTTATTCACCTGTTTTTCA  792

seq1  AATCATACAGAAATAAATGCTTTTCTAAAGCAAAAGCATATTTCCAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACAGAAATAAATGCTTTTCTAAAGCAAAAGCATATTTCCAGCTT  842

seq1  TAATGTTTTTAACATGATTTGAATTACTGTTTCCTCTCTTCATTCACCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTTAACATGATTTGAATTACTGTTTCCTCTCTTCATTCACCCC  892

seq1  AAAAGGTTTCATCTAGTGTCTCTCGCCTATGACAAACCCTTAATTATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTCATCTAGTGTCTCTCGCCTATGACAAACCCTTAATTATTTT  942

seq1  AGATCCCTGAACCTCTTACTTTCTCTGTCAGTTTTTTAAGAGTACTTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTGAACCTCTTACTTTCTCTGTCAGTTTTTTAAGAGTACTTTGT  992

seq1  CCAGATGTTCTGTTCTTCTTTAACCTTTTTTCTTTCAGCTGTAAAGTATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTCTGTTCTTCTTTAACCTTTTTTCTTTCAGCTGTAAAGTATG  1042

seq1  TTATTCTAGTGCTTTTTGTCCTCCATA  1075
      |||||||||||||||||||||||||||
seq2  TTATTCTAGTGCTTTTTGTCCTCCATA  1069

seq1: chr19_29553837_29554919
seq2: B6Ng01-257O16.g_66_1142

seq1  GAATTCACCAGAGCAGGAGAAAGGAGTAGGAAAGTCAGATATAATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGCAGGAGAAAGGAGTAGGAAAGTCAGATATAATAGAAT  50

seq1  AATTATGCAGACCAAGGCCAACCGAAAAGCAGTCACGAGCAGATGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCAGACCAAGGCCAACCGAAAAGCAGTCACGAGCAGATGAATTC  100

seq1  TATACAACTGTTGTCCAAGGCTAAGATTAGGAGAAATGGGAACAACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACTGTTGTCCAAGGCTAAGATTAGGAGAAATGGGAACAACTGTT  150

seq1  GTCTACAAAAGACAGCTGTGAGCTACTGACATGTCTCCACCCTGGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAAGACAGCTGTGAGCTACTGACATGTCTCCACCCTGGCCTAC  200

seq1  TGCAGGCAGTCCCTTATTTCAGGTGGCAGGTCCCCTGGAGGGATGTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGTCCCTTATTTCAGGTGGCAGGTCCCCTGGAGGGATGTAACT  250

seq1  ACTCCTTCTCAGGTTCCCAGGCACCATCCTTTTTCACAAGGAGCTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCTCAGGTTCCCAGGCACCATCCTTTTTCACAAGGAGCTGCCAC  300

seq1  AGGCTTCTGAGATGTCTCCATCCCTTTCTGCCCCTTTCCCTCTGAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGAGATGTCTCCATCCCTTTCTGCCCCTTTCCCTCTGAAAGAG  350

seq1  ACGGGAATCCTGGAGTTTATGAGAAATGGAGACACCCCTTTCGAGGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAATCCTGGAGTTTATGAGAAATGGAGACACCCCTTTCGAGGCCAC  400

seq1  TGCTCATATGTGGTTGTATCAGAGTTTCAAGCAAAAGAAAGTTAGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATGTGGTTGTATCAGAGTTTCAAGCAAAAGAAAGTTAGTGTCT  450

seq1  GCAGATGGGAAGGCGGGACTTCCTTCATTATGAAGGGGAGATCAGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGGAAGGCGGGACTTCCTTCATTATGAAGGGGAGATCAGGGACA  500

seq1  GACTCAGGACAAGTGTGCTCAAACATTCACTCCTAGCCTGAGTCCAACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGACAAGTGTGCTCAAACATTCACTCCTAGCCTGAGTCCAACGC  550

seq1  CTTCCAAGTTTCTGTTCTCCGTGCATCTGCCAGCTGCGGAATGCTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGTTTCTGTTCTCCGTGCATCTGCCAGCTGCGGAATGCTTGGTT  600

seq1  TGCTTCTGAATCCTTAGTAATATTTAGTTATTCCTGCAACCAGAAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAATCCTTAGTAATATTTAGTTATTCCTGCAACCAGAAAGAAC  650

seq1  ACGATATATTTTGAACGCCTGCTTAGAACCCCCTACTGGTGCTCTGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATATTTTGAACGCCTGCTTAGAACCCCCTACTGGTGCTCTGCCTA  700

seq1  CGGTTTTAGGGGAAATCTCTGAGCTTGCTGCTTTCTTCCTGCACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTAGGGGAAATCTCTGAGCTTGCTGCTTTCTTCCTGCACACACAC  750

seq1  TAATACAGAAGCAGCCACATCACCTCGATTCCTTTATGACCTTATCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGAAGCAGCCACATCACCTCGATTCCTTTATGACCTTATCTTTA  800

seq1  CTAGAACAATGCTCCAATATAACAGCTACTCGGTTTCCAAAAATTCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAATGCTCCAATATAACAGCTACTCGGTTTCCAAAAATTCTACT  850

seq1  TCTCCATCAAGCCTCCCTCGGGTCTCAGGAAGCTACGAGGAAGAGGAGGC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCCATCAAGCCTCCCTCGGGTCTCA-GAAGCTACGAGGAAGAGGAGGC  899

seq1  AGGAAAACCGTAAATCGGTGGGGATGGACGACACCAAGGAAATAAGACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCGTAAATCGGTGGGGATGGACGACACCAAGGAAATAAGACCT  949

seq1  TCTAGATAAGAGAGCAGAACTGATGCTCGTAGAAGCTCACAGACACCGTG  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAT-AGAGAGCAGAACTGATGCTCGTAGAAGCTCACAGACACCGTG  998

seq1  GCAGCACGCACAGGACCTGCACAGTCCCAGTACTGAGAGGGGAACTGG-A  1049
      |||||||||||| ||||||||||||||||||||||||||||| ||||| |
seq2  GCAGCACGCACA-GACCTGCACAGTCCCAGTACTGAGAGGGG-ACTGGAA  1046

seq1  CACGAGGCCCATCCCTCAACGCAGAAATGTTCTC  1083
      ||||| ||||||||||||||||||  ||||||||
seq2  CACGA-GCCCATCCCTCAACGCAG--ATGTTCTC  1077