BAC Information

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BAC

Clone NameB6Ng01-258A03
Chromosome19 (Build37)
Map Location 9,318,726 - 9,319,166
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699
Downstream geneLOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258A03.g
ACCGA063560
length728
definitionB6Ng01-258A03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaccaaaagcagggtagaaaccctgggctgggatttatgtt
tttttgttttattttttttaaattttggtttcattttttattagatattt
cctttatttacatttcagatgttatcccctttcctagttttccctatgaa
aaatcccctatctcttccccttccccttgcccacaacccacccactccca
ttcctggtcctggggcacagaaccttcacaggaccaagggcctttcctcc
cattgatgaccaacaaggccatcctctgctacatatatagctagagtcat
aagttccaccatgtgttttcgttgattggtggtatagttccaaggagctc
tgctggttcatattgatgttcctcctatggggcttcagtccccttcaact
ccctgtgtatttctctggctccttcttggggattttgtgctccatccaat
tgatgactgtgagcatccacttctgtatttgccaggcactggcacagcct
cacaggagacagctctatcaggctcctgtcagcaggttcttgttggtatc
tgcctagtgactgggtttggtggcagtttatggggtggatccccaagtag
ggcagtctctggatggtagttccttcaggatctgctccaaactttgtttc
tataactcctttgatgggtattttgttccccattctaagaaggaacaaag
tatccacactttggtcttccttcttcta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9318726_9319166
seq2: B6Ng01-258A03.g_120_593 (reverse)

seq1  AGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTGACTGGCAAA  50
      |||| ||||||| ||||||||| ||||||||| |||||||| ||||||||
seq2  AGGAGCCTGATAGAGCTGTCTCCTGTGAGGCTGTGCCAGTGCCTGGCAAA  50

seq1  CACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACATGGGGCCCCC  100
       ||||||||||||||||||||||| | |||||||||| ||      ||||
seq2  TACAGAAGTGGATGCTCACAGTCATCAATTGGATGGAGCACAAAATCCCC  100

seq1  ATTGGAGGAGCTAGAGAAAGTACCTACCCAAGGAGCTAAATGGGTCTGCA  150
      |  | |||||| |||||||     ||| || |||| | || ||| ||| |
seq2  A-AGAAGGAGCCAGAGAAA-----TACACAGGGAGTTGAAGGGGACTGAA  144

seq1  ACCCTACAGGTGGAACAACAATATGAAC---------------TAACTAG  185
       ||| | ||| |||||| ||||||||||                ||||| 
seq2  GCCCCATAGGAGGAACATCAATATGAACCAGCAGAGCTCCTTGGAACTA-  193

seq1  TACCCCC-------------------CTGAGCTCGTGTCTCTAGCTGCAT  216
      |||| ||                     || ||  || ||||||||  ||
seq2  TACCACCAATCAACGAAAACACATGGTGGAACTTATGACTCTAGCTATAT  243

seq1  ATGTAGCAGAAGATGGTCTAGTTGGCCATCATTTGGAAGAGAGACCCCTT  266
      |||||||||| ||||| || ||||| ||||| | ||| || ||  |||||
seq2  ATGTAGCAGAGGATGGCCTTGTTGGTCATCAATGGGAGGAAAG-GCCCTT  292

seq1  GGTCTTGCAAACTTTATATGCCTCAGTACATGGGAACGCCATGGCCAAGA  316
      |||| ||  ||  || | ||||                ||| | ||| ||
seq2  GGTCCTGTGAAGGTTCTGTGCC----------------CCAGGACCAGGA  326

seq1  AGTGGGAGTGGG-GGGTAGGGG---AGTGGAGGGAGAGGGTATGGGGGAC  362
      | |||||||||| |||| | ||   || ||| || || |  || ||||| 
seq2  A-TGGGAGTGGGTGGGTTGTGGGCAAGGGGAAGGGGAAGAGATAGGGGAT  375

seq1  TTTT--------------------GGGATAGCATTTGAAATGTAAATGAA  392
      ||||                    |||||| ||| |||||||||||| ||
seq2  TTTTCATAGGGAAAACTAGGAAAGGGGATAACATCTGAAATGTAAATAAA  425

seq1  GAAAATACCTAATTAAAACAAAATTTGGAAATTAAAAAAAATAAAACAA  441
      | ||||| ||||| ||||   ||     || ||||||||||||||||||
seq2  GGAAATATCTAATAAAAAATGAAACCAAAATTTAAAAAAAATAAAACAA  474