BAC Information

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BAC

Clone NameB6Ng01-258E16
Chromosome19 (Build37)
Map Location 3,751,344 - 3,878,249
singlet/doubletdoublet
Overlap geneSuv420h1, Chka
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289
Downstream geneTcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258E16.bB6Ng01-258E16.g
ACCGA063768GA063769
length8651,122
definitionB6Ng01-258E16.b B6Ng01-258E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,751,344 - 3,752,155)(3,877,124 - 3,878,249)
sequence
ggaattctgtgtcctgcacagctgtccttcaaaaccaaagagaaagttac
atatgttgcccggtagacaagagccactagagctcattacaagtagcctt
gccccacaagatatgcttctgtgagcccttcaagggaaaaagaaatgtca
ggagatggtaactcaaagctgttagatgtgaagattttaattaagctatg
gtgcactgatgggtcagttcacttggatcagccacattgcacacagatga
gcctttgtacagtgatcagccattgcacacgatgatccattgcacaggga
tgagccattgcacactgtcctagttagggtttctattgctatgatgaaat
atcatgatcaaagcaacttgtagaagaatgagtttatttgacttatactt
ccaaatcactgttcattactgtaggaagtcaggacgggaactcaaacagg
gcaagaacccagaggcagaagctgatgtggaggccatagaggggtgctgc
ttactgtttgctccccgtggcttgctcaacctactttctttttttttttt
ttttttttttgactcaggttttcttttcttttttttttttttaaagattt
atttattattatatgtaagtaccctgtagctatcttcagacacaccagaa
gagggagtcagatcttgttacggatggttgtgagccaccatgtggttgct
gggatttgaactctggaccttcagaagagcagttgggtgctcttacccac
tgagccatctcaccagccctcaacctacttttcttatagagcacaggacc
accagcccagggataacactacccacaacaggctggatcttccaccttca
accagcaattaagaa
gaattcaacccccaacacaaccaaactgaggtgagagaagtgttaggatt
ttttagttaaggttttactacacagcccaggttgacctcaaactcagtgc
aaactttcctttaaaaaaaatatacacacacacacatatatatatgaatg
attagatcctatttcagatggtcgtgggtagccatgtagttggtgggaat
tgaactcaggacctttggaagatcagccagtgctcttaaccctcttagtc
agctctctagccccatctcaatctttcttcatcagcctccccaagtactg
agatcacaggaatgaatcatggctttaaaacaaacaaaacttaaggaaga
cttaggaaagactaaaataaaagagaaatagaaatgctgtcaggaaaggc
agcagagatcacctgggttgggaaggacattagcaagagcatctggctcc
ttggagaaggaatgggggacaataagctgagacgttaaacccaaagaaga
aagagtgggcatgctgaatgcaaggcaaagattccctccataggggttgc
cagtggaaggtagcacaaaagagcagggtttggagtagaagatgtcaggt
aaggggtgagcagccaaagaatgagtttcacactgcatgcctagggtggg
acaggaaagcctgaagagaaaacagatacctgaagcagaccttagaaccc
aaggcaaacctgagcgtgaggcttagcaggctgccacggtaagcactgct
gaggtggaacaccagctctctctcgcaaatgtgagattctctgcagtgca
gtgcaataaaggcaagcatggaggtccaacaggttcagcatggcagggtt
acaggtaagcacaggactgacatcagaaggaagcactggggctgtatgta
tggaggaatgcctgcaggcatagctggtccattagaaggatggccagttg
agaatattcatgggacagacatgtctgcactacagacctccaagaaatca
agtaactgcttaagccccacatgacaaagagggttcttaccacctctgag
acagccaggacacactttatgggagagtcatcagaacgaataaatggaac
gcctcaagaaagattcagtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_3751344_3752155
seq2: B6Ng01-258E16.b_49_861

seq1  GAATTCTGTGTCCTGCACAGCTGTCCTTCAAAACCAAAGAGAAAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCCTGCACAGCTGTCCTTCAAAACCAAAGAGAAAGTTACA  50

seq1  TATGTTGCCCGGTAGACAAGAGCCACTAGAGCTCATTACAAGTAGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGCCCGGTAGACAAGAGCCACTAGAGCTCATTACAAGTAGCCTTG  100

seq1  CCCCACAAGATATGCTTCTGTGAGCCCTTCAAGGGAAAAAGAAATGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAGATATGCTTCTGTGAGCCCTTCAAGGGAAAAAGAAATGTCAG  150

seq1  GAGATGGTAACTCAAAGCTGTTAGATGTGAAGATTTTAATTAAGCTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTAACTCAAAGCTGTTAGATGTGAAGATTTTAATTAAGCTATGG  200

seq1  TGCACTGATGGGTCAGTTCACTTGGATCAGCCACATTGCACACAGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGATGGGTCAGTTCACTTGGATCAGCCACATTGCACACAGATGAG  250

seq1  CCTTTGTACAGTGATCAGCCATTGCACACGATGATCCATTGCACAGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACAGTGATCAGCCATTGCACACGATGATCCATTGCACAGGGAT  300

seq1  GAGCCATTGCACACTGTCCTAGTTAGGGTTTCTATTGCTATGATGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTGCACACTGTCCTAGTTAGGGTTTCTATTGCTATGATGAAATA  350

seq1  TCATGATCAAAGCAACTTGTAGAAGAATGAGTTTATTTGACTTATACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCAAAGCAACTTGTAGAAGAATGAGTTTATTTGACTTATACTTC  400

seq1  CAAATCACTGTTCATTACTGTAGGAAGTCAGGACGGGAACTCAAACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACTGTTCATTACTGTAGGAAGTCAGGACGGGAACTCAAACAGGG  450

seq1  CAAGAACCCAGAGGCAGAAGCTGATGTGGAGGCCATAGAGGGGTGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCAGAGGCAGAAGCTGATGTGGAGGCCATAGAGGGGTGCTGCT  500

seq1  TACTGTTTGCTCCCCGTGGCTTGCTCAACCTACTTTCTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTGCTCCCCGTGGCTTGCTCAACCTACTTTCTTTTTTTTTTTTT  550

seq1  TTTTTTTTTGACTCAGGTTTTCTTTTCTTTTTTTTTTTTTTAAAGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGACTCAGGTTTTCTTTTCTTTTTTTTTTTTTTAAAGATTTA  600

seq1  TTTATTATTATATGTAAGTACCCTGTAGCTATCTTCAGACACACCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTATATGTAAGTACCCTGTAGCTATCTTCAGACACACCAGAAG  650

seq1  AGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTG  700

seq1  GGATTTGAACTCTGGACCTTCAGAAGAGCAGTTGGGTGCTCTTACCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACTCTGGACCTTCAGAAGAGCAGTTGGGTGCTCTTACCCACT  750

seq1  GAGCCATCTCACCAGCCCTCAACCTAC-TTTCTTATAGAGCACAGGACCA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCCATCTCACCAGCCCTCAACCTACTTTTCTTATAGAGCACAGGACCA  800

seq1  CCAGCCCAGGGAT  812
      |||||||||||||
seq2  CCAGCCCAGGGAT  813

seq1: chr19_3877124_3878249
seq2: B6Ng01-258E16.g_67_1188 (reverse)

seq1  TCCACTGAATCTCTCCTGA-GCGTTCCCAATTATTCCTTCTGATGACCTC  49
      |||||||||||| || ||| ||||| ||| |||||| ||||||||| |||
seq2  TCCACTGAATCTTTCTTGAGGCGTT-CCATTTATTCGTTCTGATGA-CTC  48

seq1  TCCCAT-AAGTGTGTCCTGGCTGTCTCCAAGAGGTGGTAGGAACCCTCTT  98
      |||||| ||||||||||||||||||||  |||||||||| ||||||||||
seq2  TCCCATAAAGTGTGTCCTGGCTGTCTC--AGAGGTGGTAAGAACCCTCTT  96

seq1  TGTCATGTGGGGCTTAAGCAGTTACTTTGATTTCTTGGAGGTCTGTAGTG  148
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTCATGTGGGGCTTAAGCAGTTAC-TTGATTTCTTGGAGGTCTGTAGTG  145

seq1  CAGACATTGTCTGTCCCATGAATATTCTCCACTGGCCATCCTTCTAATGG  198
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGACA-TGTCTGTCCCATGAATATTCTCAACTGGCCATCCTTCTAATGG  194

seq1  ACCAGCTATGCCTGCAGGCATTCCTCCATACATACAGCCCCAGTGCTTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTATGCCTGCAGGCATTCCTCCATACATACAGCCCCAGTGCTTCC  244

seq1  TTCTGATGTCAGTCCTGTGCTTACCTGTAACCCTGCCATGCTGAACCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGTCAGTCCTGTGCTTACCTGTAACCCTGCCATGCTGAACCTGT  294

seq1  TGGACCTCCATGCTTGCCTTTATTGCACTGCACTGCAGAGAATCTCACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTCCATGCTTGCCTTTATTGCACTGCACTGCAGAGAATCTCACAT  344

seq1  TTGCGAGAGAGAGCTGGTGTTCCACCTCAGCAGTGCTTACCGTGGCAGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGAGAGAGAGCTGGTGTTCCACCTCAGCAGTGCTTACCGTGGCAGCC  394

seq1  TGCTAAGCCTCACGCTCAGGTTTGCCTTGGGTTCTAAGGTCTGCTTCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCCTCACGCTCAGGTTTGCCTTGGGTTCTAAGGTCTGCTTCAGG  444

seq1  TATCTGTTTTCTCTTCAGGCTTTCCTGTCCCACCCTAGGCATGCAGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTTCTCTTCAGGCTTTCCTGTCCCACCCTAGGCATGCAGTGTG  494

seq1  AAACTCATTCTTTGGCTGCTCACCCCTTACCTGACATCTTCTACTCCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTCTTTGGCTGCTCACCCCTTACCTGACATCTTCTACTCCAAA  544

seq1  CCCTGCTCTTTTGTGCTACCTTCCACTGGCAACCCCTATGGAGGGAATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCTTTTGTGCTACCTTCCACTGGCAACCCCTATGGAGGGAATCT  594

seq1  TTGCCTTGCATTCAGCATGCCCACTCTTTCTTCTTTGGGTTTAACGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGCATTCAGCATGCCCACTCTTTCTTCTTTGGGTTTAACGTCTC  644

seq1  AGCTTATTGTCCCCCATTCCTTCTCCAAGGAGCCAGATGCTCTTGCTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTGTCCCCCATTCCTTCTCCAAGGAGCCAGATGCTCTTGCTAAT  694

seq1  GTCCTTCCCAACCCAGGTGATCTCTGCTGCCTTTCCTGACAGCATTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCCAACCCAGGTGATCTCTGCTGCCTTTCCTGACAGCATTTCTA  744

seq1  TTTCTCTTTTATTTTAGTCTTTCCTAAGTCTTCCTTAAGTTTTGTTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTATTTTAGTCTTTCCTAAGTCTTCCTTAAGTTTTGTTTGTT  794

seq1  TTAAAGCCATGATTCATTCCTGTGATCTCAGTACTTGGGGAGGCTGATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCATGATTCATTCCTGTGATCTCAGTACTTGGGGAGGCTGATGA  844

seq1  AGAAAGATTGAGATGGGGCTAGAGAGCTGACTAAGAGGGTTAAGAGCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTGAGATGGGGCTAGAGAGCTGACTAAGAGGGTTAAGAGCACT  894

seq1  GGCTGATCTTCCAAAGGTCCTGAGTTCAATTCCCACCAACTACATGGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCTTCCAAAGGTCCTGAGTTCAATTCCCACCAACTACATGGCTA  944

seq1  CCCACGACCATCTGAAATAGGATCTAATCATTCATATATATATGTGTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGACCATCTGAAATAGGATCTAATCATTCATATATATATGTGTGTG  994

seq1  TGTGTATATTTTTTTTAAAGGAAAGTTTGCACTGAGTTTGAGGTCAACCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATTTTTTTTAAAGGAAAGTTTGCACTGAGTTTGAGGTCAACCT  1044

seq1  GGGCTGTGTAGTAAAACCTTAACTAAAAAATCCTAACACTTCTCTCACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTAGTAAAACCTTAACTAAAAAATCCTAACACTTCTCTCACCT  1094

seq1  CAGTTTGGTTGTGTTGGGGGTTGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  CAGTTTGGTTGTGTTGGGGGTTGAATTC  1122