BAC Information

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BAC

Clone NameB6Ng01-259C23
Chromosome19 (Build37)
Map Location 40,355,171 - 40,484,460
singlet/doubletdoublet
Overlap geneLOC435599, Sorbs1, A930028N01Rik
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C23.bB6Ng01-259C23.g
ACCGA064434GA064435
length1,1861,101
definitionB6Ng01-259C23.b B6Ng01-259C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,355,171 - 40,356,323)(40,483,365 - 40,484,460)
sequence
gaattcatccagctatctggagagagaacatcccaggtgaggcaaacagt
gagttaaaggttaaaggagagaacaaggtgggcctggtaaccagcatgga
ggccagagggctcaggctgagtaaaggagaaaggagaggaagctgaagtc
agagagacagcaacccagctggacacacctctgaaagccctggagaaaga
ggatgccctgagggctgaggacagaggattactaagacaggatgttttcc
acagtctggttactgtatcaaaaacagatggaaaggctcaggtagctcag
ttagtaaagtgactgactggcaagcgtgaagacctgaattcagtccccag
aatccacatagaaaagccaggagcagccgcatatgcttgcaatcccagga
ctggacagagacaggtaggtcattgtctcactcgaaggtcagtctagcct
actcgagtaagagaccctgtctcaaagaccaaggcagaaagctcctgtgg
aacaacacctgaaatcgtctcgacctccacatgtatgcatacacacctgt
gctggcacatacatacatacaaatgcaaaagcaaaacagatggatgagcg
cacaagacaacaaagctaggcacccgtgaactgttcaagcagtggttctc
aacccgtggggcccaacccctggggagggtcaaatgaccctttcataaag
gctgcctaagaccattggaaaacacacagatattatagtgtgattaataa
attaaaattaaagttataaagtagcaacaaacataattttatggttgggg
gggtcaccacaacatgaactgtattaacggttgttagggaggttgagaat
cattgtgtcagagtaactcaggtgaaagaccatcaatgacttggatacag
ggtaggaacagaggcatctgattagtgcctagattcttcctttattttaa
agcacttgctgataggaggaaaagcacaggagacctgtcaggatgagtct
ggctttgtcatggtaaggaagtgctccctacaccctgaacagagcagcaa
gggcatggcttcacgtgtgtggatgcttgttatgggcataagcttgttgg
aatatatgtatgtaattcatgtcctcaccttaaggatgtcctaatggagt
ccatgataattcatgacagcacaagctctgcgaggt
gaattctctagattgtctttagggaagagcgccacagtcactggacgccg
cagtcagacggttttgtttgggttctgtagacaggaccatatttgggaaa
cgcaaagggaccagttttcacttttagggcttgtcttggttaacaatgca
tgcttaagaacctttgtatgcccggagttgtacacactgagattgtgaag
tagctaagggttctggaatgctaagacagaggagcggggaattggcagga
ggggaggtttgtgtctcagggagggactgtgtgggtggttacctggcagt
ccctgtagccctcttaaaatgagatatttggtgcagttgcttctttagga
aatctggcagaacctttgagtcactccgtgtcccccgagtcctcataagg
agttacaatggggtagcctggtctcataagcaaaagcagtagatgtgatt
aatgttagagctctgcacgccaggtcaccagttagtccagtggaaagggg
cattgtgtggacttctcatagacaagattattagtcacagttttttagtt
tgctagaattttctcttgaaagttgtaaagattacagatatcaaatatga
gctaagaaaaattacttttcatgaaaaaagtgtcttacaggttgaacatc
cctggccttttttttttttttttttaagatttatttattttatttctata
agtacactgtcactgtcctcagacacaccagaaagagggcatcagatccc
attacagatgattgtgagccaccatgtggttgctgggaattgaactcaga
acctctagaagagcagtttggtgctcttaaccgctgagccatctctccag
ctccacttccctgatcttaaagccccaaatctgaaatgctctagaatcca
aaactttgactgtcagagttgacaaccacaagtagaaagggcccaactct
gtctcatggtgatagattgaagcaaatgctaagagtactgtagaattggt
ttttggctgtagcattagacgtgatgaaatttccatgtagatctaggatc
cctcattcatttcatttttatgaaatactagaatatcccgaaatggtgaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40355171_40356323
seq2: B6Ng01-259C23.b_88_1227

seq1  CAGTGAGTTAAAGGTTAAAGGAGAGAACAAGGTGGGCCTGGTAACCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTAAAGGTTAAAGGAGAGAACAAGGTGGGCCTGGTAACCAGCA  50

seq1  TGGAGGCCAGAGGGCTCAGGCTGAGTAAAGGAGAAAGGAGAGGAAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGAGGGCTCAGGCTGAGTAAAGGAGAAAGGAGAGGAAGCTGA  100

seq1  AGTCAGAGAGACAGCAACCCAGCTGGACACACCTCTGAAAGCCCTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGAGACAGCAACCCAGCTGGACACACCTCTGAAAGCCCTGGAGA  150

seq1  AAGAGGATGCCCTGAGGGCTGAGGACAGAGGATTACTAAGACAGGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATGCCCTGAGGGCTGAGGACAGAGGATTACTAAGACAGGATGTT  200

seq1  TTCCACAGTCTGGTTACTGTATCAAAAACAGATGGAAAGGCTCAGGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTCTGGTTACTGTATCAAAAACAGATGGAAAGGCTCAGGTAGC  250

seq1  TCAGTTAGTAAAGTGACTGACTGGCAAGCGTGAAGACCTGAATTCAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGTAAAGTGACTGACTGGCAAGCGTGAAGACCTGAATTCAGTCC  300

seq1  CCAGAATCCACATAGAAAAGCCAGGAGCAGCCGCATATGCTTGCAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCCACATAGAAAAGCCAGGAGCAGCCGCATATGCTTGCAATCCC  350

seq1  AGGACTGGACAGAGACAGGTAGGTCATTGTCTCACTCGAAGGTCAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGACAGAGACAGGTAGGTCATTGTCTCACTCGAAGGTCAGTCTA  400

seq1  GCCTACTCGAGTAAGAGACCCTGTCTCAAAGACCAAGGCAGAAAGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCGAGTAAGAGACCCTGTCTCAAAGACCAAGGCAGAAAGCTCCT  450

seq1  GTGGAACAACACCTGAAATCGTCTCGACCTCCACATGTATGCATACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAACACCTGAAATCGTCTCGACCTCCACATGTATGCATACACAC  500

seq1  CTGTGCTGGCACATACATACATACAAATGCAAAAGCAAAACAGATGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGCACATACATACATACAAATGCAAAAGCAAAACAGATGGATG  550

seq1  AGCGCACAAGACAACAAAGCTAGGCACCCGTGAACTGTTCAAGCAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCACAAGACAACAAAGCTAGGCACCCGTGAACTGTTCAAGCAGTGGT  600

seq1  TCTCAACCCGTGGGGCCCAACCCCTGGGGAGGGTCAAATGACCCTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCCGTGGGGCCCAACCCCTGGGGAGGGTCAAATGACCCTTTCAT  650

seq1  AAAGGCTGCCTAAGACCATTGGAAAACACACAGATATTATAGTGTGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGCCTAAGACCATTGGAAAACACACAGATATTATAGTGTGATTA  700

seq1  ATAAATTAAAATTAAAGTTATAAAGTAGCAACAAACATAATTTTATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAATTAAAGTTATAAAGTAGCAACAAACATAATTTTATGGTT  750

seq1  GGGGGGGTCACCACAACATGAACTGTATTAACGGTTGTTAGGGAGGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTCACCACAACATGAACTGTATTAACGGTTGTTAGGGAGGTTGA  800

seq1  GAATCATTGTGTCAGAGTAACTCAGGTGAAAGACCATCAATGACTTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTGTGTCAGAGTAACTCAGGTGAAAGACCATCAATGACTTGGAT  850

seq1  ACAGGGTAGGAACAGAGGCATCTGATTAGTGCCTAGATTCTTCCTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAGGAACAGAGGCATCTGATTAGTGCCTAGATTCTTCCTTTATT  900

seq1  TTAAAGCACTTGCTGATAGGAGGAAAAGCACAGGAGACCTGTCAGGGATG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAAGCACTTGCTGATAGGAGGAAAAGCACAGGAGACCTGTCA-GGATG  949

seq1  AGTCTGGCTTGGCCATGGTAAGGAAAGTGCTCCCTTACACCCTGAACAGA  1000
      |||||||||| | |||||||||| |||||||||| |||||||||||||||
seq2  AGTCTGGCTTTGTCATGGTAAGG-AAGTGCTCCC-TACACCCTGAACAGA  997

seq1  GCCAGC-AGGGCATGGGCCTCCACGTGTGTTGATGCTTGTTATGGGCATA  1049
      | |||| |||||||||  || ||||||||| |||||||||||||||||||
seq2  G-CAGCAAGGGCATGG--CTTCACGTGTGTGGATGCTTGTTATGGGCATA  1044

seq1  AGGCTTGTTTGAATAATAATGTATGTATTTTCATGTTCCTCCACTAAGGA  1099
      | ||||||| |||||   |||||||||  |||||| |||||  || | | 
seq2  A-GCTTGTTGGAATA--TATGTATGTA-ATTCATG-TCCTCACCTTAAGG  1089

seq1  ATGTCCTCTATAGGAATGTCCATGATAATCAGAGACAGCACAAG-TCTGG  1148
      |||||  |||  |||  ||||||||||||    ||||||||||| |||| 
seq2  ATGTC--CTAATGGA--GTCCATGATAATTCATGACAGCACAAGCTCTGC  1135

seq1  GAGGT  1153
      |||||
seq2  GAGGT  1140

seq1: chr19_40483365_40484460
seq2: B6Ng01-259C23.g_66_1166 (reverse)

seq1  TTTCA-CATTTTGGGATA-TCTAGTATTTTCATAAAAATGAAATGAATGA  48
      ||||| ||||| |||||| ||||||| |||||||||||||||||||||||
seq2  TTTCACCATTTCGGGATATTCTAGTA-TTTCATAAAAATGAAATGAATGA  49

seq1  GGGATCTAAGATCTACAT-GAAATTTCATCACGTCTAATGCCTACAGGCC  97
      ||||||  |||||||||| ||||||||||||||||||||| ||||| |||
seq2  GGGATCCTAGATCTACATGGAAATTTCATCACGTCTAATG-CTACA-GCC  97

seq1  AAAAACCAATTCTACAGTACTCTTAGCATTTGCCTTCAATCTATCA-CAT  146
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AAAAACCAATTCTACAGTACTCTTAGCATTTG-CTTCAATCTATCACCAT  146

seq1  GAGACAGAGTTGGG-CCTTTCTACTTGTGG-TGTC-ACTCTGACAGTCAA  193
      |||||||||||||| ||||||||||||||| |||| ||||||||||||||
seq2  GAGACAGAGTTGGGCCCTTTCTACTTGTGGTTGTCAACTCTGACAGTCAA  196

seq1  AGTTTTGGGTTCTAGAGCATTTCAGATTTGGGGCTTTAAGATCAGGGAAG  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGATTCTAGAGCATTTCAGATTTGGGGCTTTAAGATCAGGGAAG  246

seq1  TGGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACC-AACTGCTCTTCTA  292
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAAACTGCTCTTCTA  296

seq1  GAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCT  346

seq1  GTAATGGGATCTGATGCCCTC-TTCTGGTGTGTCTGAGGACAGTGACAGT  391
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAATGGGATCTGATGCCCTCTTTCTGGTGTGTCTGAGGACAGTGACAGT  396

seq1  GTACTTATAGAAATAAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATAGAAATAAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAGG  446

seq1  CCAGGGATGTTCAACCTGTAAGACACTTTTTTCATGAAAAGTAATTTTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGTTCAACCTGTAAGACACTTTTTTCATGAAAAGTAATTTTTC  496

seq1  TTAGCTCATATTTGATATCTGTAATCTTTACAACTTTCAAGAGAAAATTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATATTTGATATCTGTAATCTTTACAACTTTCAAGAGAAAATTC  546

seq1  TAGCAAACTAAAAAACTGTGACTAATAATCTTGTCTATGAGAAGTCCACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACTAAAAAACTGTGACTAATAATCTTGTCTATGAGAAGTCCACA  596

seq1  CAATGCCCCTTTCCACTGGACTAACTGGTGACCTGGCGTGCAGAGCTCTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCCTTTCCACTGGACTAACTGGTGACCTGGCGTGCAGAGCTCTA  646

seq1  ACATTAATCACATCTACTGCTTTTGCTTATGAGACCAGGCTACCCCATTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATCACATCTACTGCTTTTGCTTATGAGACCAGGCTACCCCATTG  696

seq1  TAACTCCTTATGAGGACTCGGGGGACACGGAGTGACTCAAAGGTTCTGCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTATGAGGACTCGGGGGACACGGAGTGACTCAAAGGTTCTGCC  746

seq1  AGATTTCCTAAAGAAGCAACTGCACCAAATATCTCATTTTAAGAGGGCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTAAAGAAGCAACTGCACCAAATATCTCATTTTAAGAGGGCTA  796

seq1  CAGGGACTGCCAGGTAACCACCCACACAGTCCCTCCCTGAGACACAAACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTGCCAGGTAACCACCCACACAGTCCCTCCCTGAGACACAAACC  846

seq1  TCCCCTCCTGCCAATTCCCCGCTCCTCTGTCTTAGCATTCCAGAACCCTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTGCCAATTCCCCGCTCCTCTGTCTTAGCATTCCAGAACCCTT  896

seq1  AGCTACTTCACAATCTCAGTGTGTACAACTCCGGGCATACAAAGGTTCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCACAATCTCAGTGTGTACAACTCCGGGCATACAAAGGTTCTT  946

seq1  AAGCATGCATTGTTAACCAAGACAAGCCCTAAAAGTGAAAACTGGTCCCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCATTGTTAACCAAGACAAGCCCTAAAAGTGAAAACTGGTCCCT  996

seq1  TTGCGTTTCCCAAATATGGTCCTGTCTACAGAACCCAAACAAAACCGTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTTCCCAAATATGGTCCTGTCTACAGAACCCAAACAAAACCGTCT  1046

seq1  GACTGCGGCGTCCAGTGACTGTGGCGCTCTTCCCTAAAGACAATCTAGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGGCGTCCAGTGACTGTGGCGCTCTTCCCTAAAGACAATCTAGAG  1096

seq1  AATTC  1096
      |||||
seq2  AATTC  1101