BAC Information

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BAC

Clone NameB6Ng01-260B11
Chromosome19 (Build37)4 (Build37)
Map Location 12,645,921 - 12,646,02249,663,620 - 49,664,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
Downstream gene4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260B11.bB6Ng01-260B11.g
ACCGA065102GA065103
length7971,176
definitionB6Ng01-260B11.b B6Ng01-260B11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,645,921 - 12,646,022)(49,663,620 - 49,664,810)
sequence
gaattctccaatttctttatgaacttagtgctatgaactttccttctagc
actgctttcattgtatcccataaatttgtgtatattgtatcttcattttc
attcaattctaggaagcctttaatttatttcttctctaacaaggagataa
ttgagtagagaattgttccatttccatgagtgtgtaggctttcttgtgtt
tctgctggtgtttaaatccagttttaatccatggtgttctgagaagacac
aggtgttatttcagttttcttatatctgttgaggcttgctttgtgactga
ctatatgttcaattttggagaaggatccatgaggtactgagaagaaggta
tattcttttctgtgtgggtaaaatgttctgtagatatctgtgagatccat
ttgattcctaatggcatttattttcactatttctctgttccatttttgtc
tgtcgattggtgagagtggaatgttgaagtctcccactattaatgtatag
agtttagtgtgtgatttcagctttagcaatgtttcttttacaaaaatggt
tttccttgtgtttggagcaaagatgttcagaattgagatttcattcaggt
ggatgtttcctttgatgattatgaagtgtccttcctccatctcttttgat
taattttggttgaggtaatatctatctgcattgctggggtggtgtatatg
cagcagaacgatgtatcctgtttccacatcctttctgttagcctgtggtt
tttttattggggaattgagtcaattgatgttgagagatattaatgac
gaattccttaggcagtttcctcctacagaatttagacagaaggacacact
taattggatgcaacattacttttgtcccaacgtaatcctccttagccagg
gatgttctgctgaaactagctcttctgactctgacttttcttttatcctg
tgtgacatttgaatttaagggtttgatgtacttaaaaagtttgagctcag
atgtagttacacttaataatttagtaagacatgaagtgttagtgttcagc
tgatgtttacagctgccattgtcaatcctaggattaggagtttattttaa
cctttcgaaatttccttctgtttgatttttttttttttttaaggtaaact
catttccccctataaaaatcatctgaactctcagtttctcaggggcacca
cttgaatgtgcctatgtcataagtgccacagttacttacgttacaacttt
atgttgcagaattaaacagaggatgtatggcttatatatatggctttctt
ttctgtgctttccaactgcattctgtaagtcttatcagtgattatgtaaa
atgtgtctttcctttataacatagagtaaacagactgttgaaatgtggtt
gcagcatccacccaaatgtcctccctctgacgtcctttgttttctcagtc
tgttggttcttttcctctaccacccggtcataggaaagcacaagagagcc
agaaggagatgaaactactgctggatatgtaccgctctgcccccaaggag
cagagagacaaagtgcagctaatggcagctgagaagaagtcaaaggcaga
ggtaagcaaagccttctgttacctgtcatcctggtgaaaatcttcagttg
tgaaggttgtcctttatattttttcatatcaaatgttcaatttttaaaaa
tttcttttaaagaggagggcccctgactctgaaatcagtctcttaaaatt
cccttgccgggtagtaaaatatgtcaaaattacaggaatgtggagtagtt
tgtaaattttcatcttattagtcctgaagaatattaccacttacatgata
tactatagtaattctctttttctgctgcatttaaagaatctttttttgct
agcttttatgttgggtgtaaagtatgttcttgctgtaatctggtaattca
catggtggcgtggtatcatgggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12645921_12646022
seq2: B6Ng01-260B11.b_740_842 (reverse)

seq1  GTCATTAATATCTCTCAATATCAATGGACTCAATTTCCCAATAAAAAGA-  49
      |||||||||||||||||| |||||| ||||||||| ||||||||||| | 
seq2  GTCATTAATATCTCTCAACATCAATTGACTCAATTCCCCAATAAAAAAAC  50

seq1  CACAAGCTAGCAAAATGGACGTGAAAACAAGATCCATCATTCTGCTGCAT  99
      |||| |||| || || ||| ||| ||||| ||| |||| |||||||||||
seq2  CACAGGCTAACAGAAAGGATGTGGAAACAGGATACATCGTTCTGCTGCAT  100

seq1  ATA  102
      |||
seq2  ATA  103

seq1: chr4_49663620_49664810
seq2: B6Ng01-260B11.g_69_1244

seq1  GAATTCCTTAGGCAGTTTCCTCCTACAGAATTTAGACAGAAGGACACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGCAGTTTCCTCCTACAGAATTTAGACAGAAGGACACACT  50

seq1  TAATTGGATGCAACATTACTTTTGTCCCAACGTAATCCTCCTTAGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGATGCAACATTACTTTTGTCCCAACGTAATCCTCCTTAGCCAGG  100

seq1  GATGTTCTGCTGAAACTAGCTCTTCTGACTCTGACTTTTCTTTTATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGCTGAAACTAGCTCTTCTGACTCTGACTTTTCTTTTATCCTG  150

seq1  TGTGACATTTGAATTTAAGGGTTTGATGTACTTAAAAAGTTTGAGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTTGAATTTAAGGGTTTGATGTACTTAAAAAGTTTGAGCTCAG  200

seq1  ATGTAGTTACACTTAATAATTTAGTAAGACATGAAGTGTTAGTGTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTACACTTAATAATTTAGTAAGACATGAAGTGTTAGTGTTCAGC  250

seq1  TGATGTTTACAGCTGCCATTGTCAATCCTAGGATTAGGAGTTTATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTACAGCTGCCATTGTCAATCCTAGGATTAGGAGTTTATTTTAA  300

seq1  CCTTTCGAAATTTCCTTCTGTTTGATTTTTTTTTTTTTTTAAGGTAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGAAATTTCCTTCTGTTTGATTTTTTTTTTTTTTTAAGGTAAACT  350

seq1  CATTTCCCCCTATAAAAATCATCTGAACTCTCAGTTTCTCAGGGGCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCCTATAAAAATCATCTGAACTCTCAGTTTCTCAGGGGCACCA  400

seq1  CTTGAATGTGCCTATGTCATAAGTGCCACAGTTACTTACGTTACAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGTGCCTATGTCATAAGTGCCACAGTTACTTACGTTACAACTTT  450

seq1  ATGTTGCAGAATTAAACAGAGGATGTATGGCTTATATATATGGCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAGAATTAAACAGAGGATGTATGGCTTATATATATGGCTTTCTT  500

seq1  TTCTGTGCTTTCCAACTGCATTCTGTAAGTCTTATCAGTGATTATGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTTTCCAACTGCATTCTGTAAGTCTTATCAGTGATTATGTAAA  550

seq1  ATGTGTCTTTCCTTTATAACATAGAGTAAACAGACTGTTGAAATGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTTCCTTTATAACATAGAGTAAACAGACTGTTGAAATGTGGTT  600

seq1  GCAGCATCCACCCAAATGTCCTCCCTCTGACGTCCTTTGTTTTCTCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCCACCCAAATGTCCTCCCTCTGACGTCCTTTGTTTTCTCAGTC  650

seq1  TGTTGGTTCTTTTCCTCTACCACCCGGTCATAGGAAAGCACAAGAGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTCTTTTCCTCTACCACCCGGTCATAGGAAAGCACAAGAGAGCC  700

seq1  AGAAGGAGATGAAACTACTGCTGGATATGTACCGCTCTGCCCCCAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGATGAAACTACTGCTGGATATGTACCGCTCTGCCCCCAAGGAG  750

seq1  CAGAGAGACAAAGTGCAGCTAATGGCAGCTGAGAAGAAGTCAAAGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAAAGTGCAGCTAATGGCAGCTGAGAAGAAGTCAAAGGCAGA  800

seq1  GGTAAGC-AAGCCTTCTGTTACCTGTCATCCTGGTGAAAATCTTCAGTTG  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCAAAGCCTTCTGTTACCTGTCATCCTGGTGAAAATCTTCAGTTG  850

seq1  TG-AGGTTGTCCTTTATATTTTTTCATATCAAATGTTCAATTTTTAAAAA  898
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTGTCCTTTATATTTTTTCATATCAAATGTTCAATTTTTAAAAA  900

seq1  -TTCTTTAAAAGAGGAGGGCCCCTGACTCTGAAATCAGTCTCTTAAAATT  947
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAAGAGGAGGGCCCCTGACTCTGAAATCAGTCTCTTAAAATT  950

seq1  -CCTTGCCGGGTAGTAAAATATGTCAAAATTACAAGAATGTGGAGTAGGT  996
       ||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CCCTTGCCGGGTAGTAAAATATGTCAAAATTACAGGAATGTGGAGTA-GT  999

seq1  TTGTAAAAATTTTCATTCCTTAATTAGTCCTGAGAAATTATTACCACTTT  1046
      ||||  ||||||||||  ||| ||||||||||| | | ||||||||| ||
seq2  TTGT--AAATTTTCAT--CTT-ATTAGTCCTGA-AGAATATTACCAC-TT  1042

seq1  ACATGTATTATTACTATAGTAATTCTCTTTTTCTGGTTGCATTTTAAAGG  1096
      ||||| ||   ||||||||||||||||||||||| | |||||||  || |
seq2  ACATG-AT--ATACTATAGTAATTCTCTTTTTCT-GCTGCATTT--AAAG  1086

seq1  AATCTTTTTTTGCTAGTTTTTATTGTTTTGTGTGTAAGGATGTTTCCTTG  1146
      |||||||||||||||| ||||| ||||  ||||  ||| |||||  ||||
seq2  AATCTTTTTTTGCTAGCTTTTA-TGTTGGGTGT-AAAGTATGTT--CTTG  1132

seq1  CCTGTATATCTGTGTA--TCACATGTGTGCGTGGTATCCATGGAGGC  1191
       ||||| ||||| |||  |||||||   ||||||||||   ||||||
seq2  -CTGTA-ATCTG-GTAATTCACATGGTGGCGTGGTATCATGGGAGGC  1176