BAC Information

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BAC

Clone NameB6Ng01-261G01
Chromosome19 (Build37)1 (Build37)
Map Location 9,831,272 - 9,831,390141,370,261 - 141,370,874
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
Downstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261G01.bB6Ng01-261G01.g
ACCGA066062GA066063
length719615
definitionB6Ng01-261G01.b B6Ng01-261G01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,831,272 - 9,831,390)(141,370,261 - 141,370,874)
sequence
gaattctttgtttcagttctgagccccattttttaatggggttatttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttc
attaggtcccatttgtcaattctcgatcttacagaacaagccattgctgt
tctgttcaggaatttttcccctgtacccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacatgataacaaccagttgtgccaacaccaattgttgaaaa
tgctgtctttcttccactggatggttttacctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gactacttgtctgtctctataccagtaccatgcaatttttatcacaattc
tagagcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtt
tttttcttggaggcactcagagctatgagtttcccctcttagaaaatgct
ttcattgtgtcccaaaggt
gaattcttcatcgcgaatctgaaggaggttgtctggatctgtctcttgaa
gcgcttgatcacggttagtccctttagtctgtttaagtcttcagcttctt
tgccatgtttgatttttggctacagtcatctctttatctcttgtgtatgt
aatagaaagtactccagaaatgtacaaagagcttctagaaaacgagaaga
aaaatttccatttggtgcgatctgcagctagggatctgggaggaatacct
gctatgattcatcattcagacatgtcaaatacaattccagacgaaaaggt
tagtgaacgacttcgtcataatagctctttgtttggcttttgagacaggg
tttgtctgtgtagtcttggctgtcctggaatttgctctctgttgatcagt
ttggcctcaaactcagagattagcctgcctctgccttctgaaggctggga
ttaaaggtgtgagccaccacacgtggctgcagtgtccttcatgcagcctg
gaggatgataggggagacggttccctcctgaccctctgctttcctcttct
gtatttccttaggtggttatcacctatttgtcatttctttgtgcaaggct
tttggatctccttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9831272_9831390
seq2: B6Ng01-261G01.b_641_762 (reverse)

seq1  ACCTTTGGGACACAATGAAAGCA-TTTCTAAGA-GGGAAACTCATAGCTC  48
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ACCTTTGGGACACAATGAAAGCATTTTCTAAGAGGGGAAACTCATAGCTC  50

seq1  TGAGTGCCTCCAAG-AAGAAACGGGAGAGAGCACATACTAGCAGCTTGAC  97
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TGAGTGCCTCCAAGAAAAAAACGGGAGAGAGCACATACTAGCAGCTTGAC  100

seq1  AACACATCTAAAAGCTCTAGAA  119
      ||||||||||||||||||||||
seq2  AACACATCTAAAAGCTCTAGAA  122

seq1: chr1_141370261_141370874
seq2: B6Ng01-261G01.g_67_681

seq1  GAATTCTTCATCG-GAATCTGAAGGAGGTTGTCTGGATCTGTCTCTTGAA  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCGCGAATCTGAAGGAGGTTGTCTGGATCTGTCTCTTGAA  50

seq1  GCGCTTGATCACGGTTAGTCCCTTTAGTCTGTTTAAGTCTTCAGCTTCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTGATCACGGTTAGTCCCTTTAGTCTGTTTAAGTCTTCAGCTTCTT  100

seq1  TGCCATGTTTGATTTTTGGCTACAGTCATCTCTTTATCTCTTGTGTATGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTTTGATTTTTGGCTACAGTCATCTCTTTATCTCTTGTGTATGT  150

seq1  AATAGAAAGTACTCCAGAAATGTACAAAGAGCTTCTAGAAAACGAGAAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGTACTCCAGAAATGTACAAAGAGCTTCTAGAAAACGAGAAGA  200

seq1  AAAATTTCCATTTGGTGCGATCTGCAGCTAGGGATCTGGGAGGAATACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCATTTGGTGCGATCTGCAGCTAGGGATCTGGGAGGAATACCT  250

seq1  GCTATGATTCATCATTCAGACATGTCAAATACAATTCCAGACGAAAAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATTCATCATTCAGACATGTCAAATACAATTCCAGACGAAAAGGT  300

seq1  TAGTGAACGACTTCGTCATAATAGCTCTTTGTTTGGCTTTTGAGACAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACGACTTCGTCATAATAGCTCTTTGTTTGGCTTTTGAGACAGGG  350

seq1  TTTGTCTGTGTAGTCTTGGCTGTCCTGGAATTTGCTCTCTGTTGATCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTGTAGTCTTGGCTGTCCTGGAATTTGCTCTCTGTTGATCAGT  400

seq1  TTGGCCTCAAACTCAGAGATTAGCCTGCCTCTGCCTTCTGAAGGCTGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAAACTCAGAGATTAGCCTGCCTCTGCCTTCTGAAGGCTGGGA  450

seq1  TTAAAGGTGTGAGCCACCACACGTGGCTGCAGTGTCCTTCATGCAGCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGTGAGCCACCACACGTGGCTGCAGTGTCCTTCATGCAGCCTG  500

seq1  GAGGATGATAGGGGAGACGGTTCCCTCCTGACCCTCTGCTTTCCTCTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGATAGGGGAGACGGTTCCCTCCTGACCCTCTGCTTTCCTCTTCT  550

seq1  GTATTTCCTTAGGTGGTTATCACCTATTTGTCATTTCTTTGTGCAAGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCTTAGGTGGTTATCACCTATTTGTCATTTCTTTGTGCAAGGCT  600

seq1  TTTGGATCTCCGTAA  614
      ||||||||||| |||
seq2  TTTGGATCTCCTTAA  615