BAC Information

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BAC

Clone NameB6Ng01-261N01
Chromosome11 (Build37)19 (Build37)
Map Location 41,906,976 - 41,907,50020,654,057 - 20,654,631
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261N01.bB6Ng01-261N01.g
ACCGA066391GA066392
length997571
definitionB6Ng01-261N01.b B6Ng01-261N01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,906,976 - 41,907,500)(20,654,057 - 20,654,631)
sequence
gaattcctctgacatctgctattcatttcctgtgcttcttcctgtgctgt
aggttccggcgagattttctccatctatgtcagcttgtcggttgattttt
gtcattgtgtgggtctttttttaaaatatttttattacgtattttcctca
attacattttcaatgctatcccaaaagtcccccataccctcccccccccc
actcccttacccacccattcccactttttggccctggtgttcccctgtac
tggggcatataaagtttgcctgtccaatgggcctctctttccagtgatag
ccgactaggccatcttttgatacatatgcagctagagtcaagagctccgg
ggtactggttagttcatattgttgttccacttatagggttgcagttccct
ttagctccttgggtactttctctagctcctccattgggggccctgtgatc
catccaatagctgactgtgagcatccacttctgtgtttgctaggctccgg
cataatctcacaagagacagctatttcagcaaaatcttgctagtgtatgc
aatggtgtcatcgtttggaggctaattatgggatggatccctggatatgg
cagtctctaaatggtccatccttttgtctcagctccaaactttgtctctg
taactccttagctgagctcacttttgagatttcatgggtacagcttccaa
gtcatatacagagaagacattttctccaggcagacatcctgcttccctat
tatttaaataataccatggcttttataaactttctggctcttaatttaca
atgcttcccaggccgtagtgtggggttgtattgagatgtatcaactgagt
taatatattttaatatctattttcaatgctcttgttggactatggttgcc
aaaacgtgttttccatagatatgcttgtgttttttttaattatcatttat
ctgatttttagcatgtcaaattctagagaattcagaaaaatttttta

attactcatgaagcaagaaagatgggagatggtcggaacagaaaagggag
aaaacaaaggaagctcaaaggaaaggaagagaaagcaaaacacacctgga
aaaagccattggcatggaaaaatcatggcattttgaaatgatgtgtagaa
atccttaataaatttcatcaaacaaaatcattaaagtacaataacagcta
ttactttatgacaaagagtaatttttcctagaagtggaagattactagga
ctttggattagtgtaattcactataacttaactatatgaaagataaacac
ttggacacatttacaattacttctcaggtgaaataagagggcagagaaag
ggagggaactggggaagagagaggacagggaggaacaggggaaaaggggg
agatgatcaggagaaaccaggagtttagccccaagggccaacagaatgaa
tggaaagatataacctctgaatgtgggaggtggggtagggggctctagaa
tgtaccaaatcagggaggtgagagaatctcaagaatttatagggagggac
cttagatgaaatgtccaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41906976_41907500
seq2: B6Ng01-261N01.b_143_632 (reverse)

seq1  CATCCCATAATTAGCCGCCAAATGATGACACCATTGCATACACTAGCAAG  50
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CATCCCATAATTAGCCTCCAAACGATGACACCATTGCATACACTAGCAAG  50

seq1  ATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTCTGAGACTATGTTGG  100
      |||||||||||           ||||||||||||| ||||| ||||  ||
seq2  ATTTTGCTGAA-----------ATAGCTGTCTCTTGTGAGATTATGCCGG  89

seq1  GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATC  139

seq1  ACAGGGCCTCTAACGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGGAGGG  200
      |||||||| | || ||||||||||||||||||||||||||||||  ||||
seq2  ACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  189

seq1  ATTTGCAATCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGG  250
      |  ||||| |||||| ||||||||||| ||||||||||||||||||||||
seq2  AACTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTACCCCGG  239

seq1  AGCTCTTGACTCTAGCTGCATATGTATCAGAAGTTGGCCTAATCAGCCAT  300
      ||||||||||||||||||||||||||||| ||| ||||||| ||      
seq2  AGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTC------  283

seq1  CACTGGAAAGAGAGGCCATCACTGGAAAGAGAGGCCCATTGGTCGTGCAA  350
                   ||| ||||||||||||||||||||||||| |  ||||
seq2  -------------GGCTATCACTGGAAAGAGAGGCCCATTGGACAGGCAA  320

seq1  ACTTTATATGCCCCAGTACAGGGGAACGACAGGGCCAAGAAGTGGGATTG  400
      |||||||||||||||||||||||||||  ||||||||| |||||||| ||
seq2  ACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAATG  370

seq1  GGTGGTTAGGGGAGT---GGGGAGGAGGGTATGGGGGACTTTTGGGATAG  447
      ||||| || ||||||   |||| |||||||||||||||||||||||||||
seq2  GGTGGGTAAGGGAGTGGGGGGGGGGAGGGTATGGGGGACTTTTGGGATAG  420

seq1  CATTGGAAATGTAAATGAGGAAAATACCTAATAAAAATATTTTAAAAAAG  497
      ||||| |||||||| |||||||||||| ||||||||||||||||||||| 
seq2  CATTGAAAATGTAATTGAGGAAAATACGTAATAAAAATATTTTAAAAAA-  469

seq1  AAAAAATATTTTAAAAAAAGAACAAAAA  525
             |     | | ||  |||||||
seq2  -------AGACCCACACAATGACAAAAA  490


seq1: chr19_20654057_20654631
seq2: B6Ng01-261N01.g_66_641

seq1  GAATTCATTACTCATGAAGCAAGAAAGATGGGAGATGGTCGGAACAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTCATGAAGCAAGAAAGATGGGAGATGGTCGGAACAGAAA  50

seq1  AGGGAGAAAACAAAGGAAGCTCAAAGGAAAGGAAGAGAAAGCAAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAACAAAGGAAGCTCAAAGGAAAGGAAGAGAAAGCAAAACACA  100

seq1  CCTGGAAAAAGCCATTGGCATGGAAAAATCATGGCATTTTGAAATGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAAAGCCATTGGCATGGAAAAATCATGGCATTTTGAAATGATGT  150

seq1  GTAGAAATCCTTAATAAATTTCATCAAACAAAATCATTAAAGTACAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATCCTTAATAAATTTCATCAAACAAAATCATTAAAGTACAATAA  200

seq1  CAGCTATTACTTTATGACAAAGAGTAATTTTTCCTAGAAGTGGAAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTACTTTATGACAAAGAGTAATTTTTCCTAGAAGTGGAAGATTA  250

seq1  CTAGGACTTTGGATTAGTGTAATTCACTATAACTTAACTATATGAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTTGGATTAGTGTAATTCACTATAACTTAACTATATGAAAGAT  300

seq1  AAACACTTGGACACATTTACAATTACTTCTCAGGTGAAATAAGAGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGGACACATTTACAATTACTTCTCAGGTGAAATAAGAGGGCAG  350

seq1  AGAAAGGGAGGGAACTGGGGAAGAGAGAGGACAGGGAGGAACAGGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGAGGGAACTGGGGAAGAGAGAGGACAGGGAGGAACAGGGGAAA  400

seq1  AGGGGGAGATGATCAGGAGAAACCAGGAGTTTAGCCCCAAGGGCCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGATGATCAGGAGAAACCAGGAGTTTAGCCCCAAGGGCCAACAG  450

seq1  AATGAATGGAAAGATATAACCTCTGAATGTGGGAGGTGGGGTAGGGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGGAAAGATATAACCTCTGAATGTGGGAGGTGGGGTAGGGGGCT  500

seq1  CTAGAATGTACCAGATCAGGGAGGTGAGAGAATCTCAAG-ACTCAAAGGG  549
      ||||||||||||| ||||||||||||||||||||||||| | | | ||||
seq2  CTAGAATGTACCAAATCAGGGAGGTGAGAGAATCTCAAGAATTTATAGGG  550

seq1  AGGGACCTTAGATGAAATGCCCAACA  575
      ||||||||||||||||||| ||||||
seq2  AGGGACCTTAGATGAAATGTCCAACA  576


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