BAC Information

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BAC

Clone NameB6Ng01-262A21
Chromosome19 (Build37)
Map Location 9,654,952 - 9,656,030
singlet/doubletsinglet
Overlap geneStxbp3b
Upstream geneEG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152
Downstream geneLOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262A21.bB6Ng01-262A21.g
ACCGA066570GA066571
length1,2291,069
definitionB6Ng01-262A21.b B6Ng01-262A21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatctgtattgcctggtagaatatcatataatggctgcaattg
tttattggttaaagacaaatagggtcagacccattgaatatctcttaata
atttttgaaaatcatttaaggtacataaattatcagtgcgaatttggata
tgttgtggggacaccaattctgcagttatttttgttcctaaataatttac
tattatatccttttgtaccttttctggggccactactaaatttctttcct
tcaactgtgttaccacaaagctatatgcttcatcaagtaactcttccatg
agagcagcaataagaatgtcatccatgtaatgataacattttaccttcag
aaatctctttctaatccctttcaagactgtatcaacatatagttgacata
tagtaggactgtttgctattccctgtggcaaaaccatccattcaaatctc
ttatcatgttcagcatgattttgagaaggaacagtaaaagcaaacctgac
tgtatctttatgatataaagaaatagagaaaaaacaatctttgatatcta
acactataatgggccaattcctgggcaaggcagaaggcaatggcagccct
ctctgtactggtcccattaaaatcatttgcttatttatttctcatgtaac
agtctccattttcctgatttttctttataacaaatataggagtattctac
ggagaggtggagggtcgtatatggcccaattccagttgttcttgtactag
ttcctgtgcagccttcaaattttctgagggaagtggccactgaggaaccc
acaccggatcctcaattttccatgtgatgggtaatgcttcctcagtggtc
cctaggaaaaacccaacccagcacaatcattctttctgcggactggcact
gggaggctcttccttgtaaagagcgacctagctcttttccagagacatag
cccatatccaacatgatatcccgggccttggtgctgtagcttacttcatt
agtaaataaagcccatttccttcagcagatcatgaccccataaagacact
ggtactgccaatacatatgcctgaaatgccagaatgttctctcttccatt
cacttccaatgttagggagcagaagctcaatttctgcaatgagcataata
gaagtcctcttaagtcgcttgacgttgccttagctaacgagaagcatgct
ctttgtatacggggagtggatatctcaca
gaattcacactatgagaagaaaaacaagatcaatttcagtataaaaaaag
aacatggaatgtgatggtaagccaaaaatacaaaaccaattattattggc
tcatgaatactttatttaatgttcggattatttgtgagagtttccttctc
atcaagcagctggaacagaatcaaggatcaaaactattttagccaagcac
attaagttctggaacatgtctttgtctagagtcattcaatcaaaagtcaa
gtgacagtgatatgttactttgtctctttgccaggtccttacgtggactg
ttcctgcttcccaagttcttgtggacctgtcttcttttcagttgaaacaa
gaccctttaaaatggtccgtgcttatgttgaaatttccacatgagataca
agtgtccataaatcagaaaccatcttttacttaatcttagttatttctca
ggagatttgatagagatttttatgtgagaaagcaaatatcagtgatgcaa
cacagaaaaggctcaactgaaattttgtgataccaaatggctcaacataa
ttgttctgttgatatttttttcctccaaagtttactaactctgcttccag
ttcccaacagttcaggttctggaaaattttattccttcaatgttccgctc
tctattaaagtatttatggattacaatctagttcaaaccactgtaatctg
taaattgttttggggttggacattgcatggcttcgtgttttaagagaaaa
ataaaatatttaatgaggaacaagtttctaataataagttacaaatatgt
atctgcttcacagcatgtgggatcaggacaaaccatttttaattactgcc
tcttgtgctttagacttctgaccttaggtgatgtcttttgaggttccatc
ttacagcatatcatgactcctgtactcctcccttcctggccaccagtcat
tatctacacagtaagagtgctagttagtgtcagaagtcatgatacatctg
tcttcagtgtgggatgcgatttctccatactgaaatttatgctttgggta
aaaccactttatatttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9654952_9656030
seq2: B6Ng01-262A21.g_66_1134

seq1  GAATTCACACTATGAGAAGAAAAACAAGATCAATTTCAGTATAAAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTATGAGAAGAAAAACAAGATCAATTTCAGTATAAAAAAAG  50

seq1  AACATGGAATGTGATGGTAAGCCAAAAATACAAAACCAATTATTATTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAATGTGATGGTAAGCCAAAAATACAAAACCAATTATTATTGGC  100

seq1  TCATGAATACTTTATTTAATGTTCGGATTATTTGTGAGAGTTTCCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATACTTTATTTAATGTTCGGATTATTTGTGAGAGTTTCCTTCTC  150

seq1  ATCAAGCAGCTGGAACAGAATCAAGGATCAAAACTATTTTAGCCAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCAGCTGGAACAGAATCAAGGATCAAAACTATTTTAGCCAAGCAC  200

seq1  ATTAAGTTCTGGAACATGTCTTTGTCTAGAGTCATTCAATCAAAAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCTGGAACATGTCTTTGTCTAGAGTCATTCAATCAAAAGTCAA  250

seq1  GTGACAGTGATATGTTACTTTGTCTCTTTGCCAGGTCCTTACGTGGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGATATGTTACTTTGTCTCTTTGCCAGGTCCTTACGTGGACTG  300

seq1  TTCCTGCTTCCCAAGTTCTTGTGGACCTGTCTTCTTTTCAGTTGAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTCCCAAGTTCTTGTGGACCTGTCTTCTTTTCAGTTGAAACAA  350

seq1  GACCCTTTAAAATGGTCCGTGCTTATGTTGAAATTTCCACATGAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTAAAATGGTCCGTGCTTATGTTGAAATTTCCACATGAGATACA  400

seq1  AGTGTCCATAAATCAGAAACCATCTTTTACTTAATCTTAGTTATTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCATAAATCAGAAACCATCTTTTACTTAATCTTAGTTATTTCTCA  450

seq1  GGAGATTTGATAGAGATTTTTATGTGAGAAAGCAAATATCAGTGATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTGATAGAGATTTTTATGTGAGAAAGCAAATATCAGTGATGCAA  500

seq1  CACAGAAAAGGCTCAACTGAAATTTTGTGATACCAAATGGCTCAACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAGGCTCAACTGAAATTTTGTGATACCAAATGGCTCAACATAA  550

seq1  TTGTTCTGTTGATATTTTTTTCCTCCAAAGTTTACTAACTCTGCTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTGATATTTTTTTCCTCCAAAGTTTACTAACTCTGCTTCCAG  600

seq1  TTCCCAACAGTTCAGGTTCTGGAAAATTTTATTCCTTCAATGTTCCGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACAGTTCAGGTTCTGGAAAATTTTATTCCTTCAATGTTCCGCTC  650

seq1  TCTATTAAAGTATTTATGGATTACAATCTAGTTCAAACCACTGTAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAGTATTTATGGATTACAATCTAGTTCAAACCACTGTAATCTG  700

seq1  TAAATTGTTTTGGGGTTGGACATTGCATGGCTTCGTGTTTTAAGAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTTTTGGGGTTGGACATTGCATGGCTTCGTGTTTTAAGAGAAAA  750

seq1  ATAAAATATTTAATGAGGAACAAGTTTCTAATAATAAGTTACAAATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTTAATGAGGAACAAGTTTCTAATAATAAGTTACAAATATGT  800

seq1  ATCTGCTTCACAGCATGTGGGATCAGGACAAACCATTTTTAATTACTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCACAGCATGTGGGATCAGGACAAACCATTTTTAATTACTGCC  850

seq1  TCTTGTGCTTTAGACTTCTGACCTTAGGTGATGTCTTTTGAGGTTCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCTTTAGACTTCTGACCTTAGGTGATGTCTTTTGAGGTTCCATC  900

seq1  TTACAGCATATCATGACTCCTGTACTCCTCCCTTCCTGGCCACCAAGTCA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTACAGCATATCATGACTCCTGTACTCCTCCCTTCCTGGCCACC-AGTCA  949

seq1  TTATCTAACACAGTAAAGAGTGCTAGTTAGTGTCAAGAAAGTCATGATAC  1000
      |||||| ||||||| ||||||||||||||||||||   ||||||||||||
seq2  TTATCT-ACACAGT-AAGAGTGCTAGTTAGTGTCA--GAAGTCATGATAC  995

seq1  ATCTGTCTTCAGTGTGGGATGCGATTTCTCCCATTACTGAAATTTAATGC  1050
      |||||||||||||||||||||||||||||||   ||||||||||| ||||
seq2  ATCTGTCTTCAGTGTGGGATGCGATTTCTCC--ATACTGAAATTT-ATGC  1042

seq1  TTTGGTAAAAACCCACTTTATAATTTAAT  1079
      |||||  |||| ||||||||| |||||||
seq2  TTTGGGTAAAA-CCACTTTAT-ATTTAAT  1069