BAC Information

Click to search

BAC

Clone NameB6Ng01-262C03
Chromosome19 (Build37)
Map Location 58,046,298 - 58,181,621
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneAfap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262C03.bB6Ng01-262C03.g
ACCGA066630GA066631
length1,1711,125
definitionB6Ng01-262C03.b B6Ng01-262C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,180,436 - 58,181,621)(58,046,298 - 58,047,429)
sequence
gaattctcagtggtggagcgggatgccttgttttattatttatttattta
ttttagagttacgaaattgaaagctctagagagattatgtgccaaagaat
gacccagaaccaggaagtagaagagctgagctctgaaccttctgactccc
ttccccctcaatgagtttgtcttcagagacaggaaaactaagtatgagaa
attcagtcggtaggaatgagagatgagaatggtagctcaccctggtctac
aactgcgctgaaagtgagcatcgaggagccagaagcttggggctgcctct
tcagaagtccacaggcagctggagggctgaaggtgactctgtggattgtg
acagcaggagccctcaagctgggacctcacgtgtcacacacatctccatt
tgctttgacaactgctgcctattccagacacaccagtccctgctttttgg
tgggcatgatctcagagcccaacatccccacacccttggggtccatgccc
catgtttccctctccctggtccacccaccttgtgctatcttacttccctc
aaaagagcatcccgacctcgttctggtgtgtctcagaagccaggctcatt
ctcaaagtactttgaactttatacctgaaacttgaaccaaggtaagaatc
atggtggtttgggtagccaagagcaggctggttatctgtgacaactgtgc
accattactgcatctgatctgggcctgctgtgctagctaagagccctcaa
ccctgaatgcctcagcctcactcactggcctgtgttgggcacgccgggga
gagaagagacctcattctggcattgggattgggaaggctgtaaggggcag
aggacgaacagatccttctgctgactgattgctcttcatctggtgttgtg
ctagctgaatcctttaccagcatcaatccatctgatcgtcccatggcccc
tcctggcccctttgggatttggttactgtcctcattggtaggatggatag
tacgctttcaggcagttaagcacctttttactaaagaaagtagtgcctaa
agagctggggtgactctctctagcatctctggagaatgttagtagaaaca
tctgtaataggatgggactgtgtttttgaacctgaagttgaagggatata
gacatcctgtctgaagagatt
gaattcttcacagttcatgtgtgccctccctctcccttcctcctctctca
tcaccgatcattgacacctctttctagtcttttactcggtgatgtttgga
ggaactgcaatcatccatcacaaaggcttcagtagaaatggtgacttgtg
actgttgtggagtgttgtagactggtggtcattgagcttccgctgagaaa
tgaatagccttaaggtttttgaatgattggatattttagtttttaatatt
atagtttagaataaatgatcagccctgtttgaccattgcgaactcccatt
tttaaagccatgcctggaataagggcattatgtccagttcagctccgcgt
gtatactcgggacatctttgcttcccagcacctcctccgcagtcacacag
ccttagctagctggcacgtgaatctaatagtttagtttttaaaatgttga
atcagctttttgacacttggctggattttcttacacttgtattattcttt
tattgttttcacagaaaacccctaaataaaatatcatccgtttcttaaac
acaatttgttgtacacagagtcttctattacaaatagattattttgactt
gaggaaacaatattttctcctcaataagaaatgtttacccagtaactacc
tttttatgatgttgcttattcctttgaattggatcttttttaaggtttta
taaccttccagttatagtccaatctaagaaaataaacgcacgccctgtaa
cacaatatgaaaagttataatgtttgaaatttaaaagacaagcatacacc
atgttcttcaaatgatatgggaaatctgaaggaatccatgcaataatttg
cctaaagcaaagtgttgagatagaaagaaacaactccaagtggctttatg
ggaaggaactgaaatatgctagggtatgtcattcctgctgaaacatccaa
ttcaactgtagtttagtcactaccaagttatcataactataagcaccaga
ataatatatcttgaaaatactgagatggtcagatttgccgtaaatcagca
cgaaatcagttctctgtaagagactttgcctgaatgtaaggcattgaatg
gctcccccttgatgtgccaagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58180436_58181621
seq2: B6Ng01-262C03.b_45_1215 (reverse)

seq1  AATCTCTTTCCTTTCCACAGACAGGATGCTCTAT-CCCCCTCAACATCAG  49
      ||||||||         ||||||||||| |||||  ||| ||||| ||||
seq2  AATCTCTT---------CAGACAGGATG-TCTATATCCCTTCAACTTCAG  40

seq1  TGTCATAAACACAGTCCCAATCACCTAATTTACAGATGTCTCCTTACTAA  99
        ||| |||||||||||||    ||||  |||||||||| ||  ||||||
seq2  GTTCAAAAACACAGTCCCA---TCCTA--TTACAGATGTTTC--TACTAA  83

seq1  CA-TCTCCAGAGATGGCT--AGAGAGTCACCCAGGCTCTTTAGGCACTAC  146
      || ||||||||||| |||  ||||||||||||  ||||||||||||||||
seq2  CATTCTCCAGAGAT-GCTAGAGAGAGTCACCCCAGCTCTTTAGGCACTAC  132

seq1  TGTCTTTAGT-AAAAGGTGCTTAACTGCCCTGAAGCCGTACTATCCATCC  195
      | |||||||| |||||||||||||||| ||||||  ||||||||||||||
seq2  TTTCTTTAGTAAAAAGGTGCTTAACTG-CCTGAAAGCGTACTATCCATCC  181

seq1  TACCAATGAGGACAGTAACCCAAATCCCAAAGGGGCCAGGAGGGGCCATG  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACCAATGAGGACAGTAA-CCAAATCCCAAAGGGGCCAGGAGGGGCCATG  230

seq1  GGACGATCAGATGGATTGATGCTGGTAAAGGATTCAGCTAGCACAACACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGATCAGATGGATTGATGCTGGTAAAGGATTCAGCTAGCACAACACC  280

seq1  AGATGAAGAGCAATCAGTCAGCAGAAGGATCTGTTCGTCCTCTGCCCCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGAGCAATCAGTCAGCAGAAGGATCTGTTCGTCCTCTGCCCCTT  330

seq1  ACAGCCTTCCCAATCCCAATGCCAGAATGAGGTCTCTTCTCTCCCCGGCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCCCAATCCCAATGCCAGAATGAGGTCTCTTCTCTCCCCGGCG  380

seq1  TGCCCAACACAGGCCAGTGAGTGAGGCTGAGGCATTCAGGGTTGAGGGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACACAGGCCAGTGAGTGAGGCTGAGGCATTCAGGGTTGAGGGCT  430

seq1  CTTAGCTAGCACAGCAGGCCCAGATCAGATGCAGTAATGGTGCACAGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGCACAGCAGGCCCAGATCAGATGCAGTAATGGTGCACAGTTG  480

seq1  TCACAGATAACCAGCCTGCTCTTGGCTACCCAAACCACCATGATTCTTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATAACCAGCCTGCTCTTGGCTACCCAAACCACCATGATTCTTAC  530

seq1  CTTGGTTCAAGTTTCAGGTATAAAGTTCAAAGTACTTTGAGAATGAGCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCAAGTTTCAGGTATAAAGTTCAAAGTACTTTGAGAATGAGCCT  580

seq1  GGCTTCTGAGACACACCAGAACGAGGTCGGGATGCTCTTTTGAGGGAAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGAGACACACCAGAACGAGGTCGGGATGCTCTTTTGAGGGAAGT  630

seq1  AAGATAGCACAAGGTGGGTGGACCAGGGAGAGGGAAACATGGGGCATGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCACAAGGTGGGTGGACCAGGGAGAGGGAAACATGGGGCATGGA  680

seq1  CCCCAAGGGTGTGGGGATGTTGGGCTCTGAGATCATGCCCACCAAAAAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGGTGTGGGGATGTTGGGCTCTGAGATCATGCCCACCAAAAAGC  730

seq1  AGGGACTGGTGTGTCTGGAATAGGCAGCAGTTGTCAAAGCAAATGGAGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGGTGTGTCTGGAATAGGCAGCAGTTGTCAAAGCAAATGGAGAT  780

seq1  GTGTGTGACACGTGAGGTCCCAGCTTGAGGGCTCCTGCTGTCACAATCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGACACGTGAGGTCCCAGCTTGAGGGCTCCTGCTGTCACAATCCA  830

seq1  CAGAGTCACCTTCAGCCCTCCAGCTGCCTGTGGACTTCTGAAGAGGCAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCACCTTCAGCCCTCCAGCTGCCTGTGGACTTCTGAAGAGGCAGC  880

seq1  CCCAAGCTTCTGGCTCCTCGATGCTCACTTTCAGCGCAGTTGTAGACCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTTCTGGCTCCTCGATGCTCACTTTCAGCGCAGTTGTAGACCAG  930

seq1  GGTGAGCTACCATTCTCATCTCTCATTCCTACCGACTGAATTTCTCATAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTACCATTCTCATCTCTCATTCCTACCGACTGAATTTCTCATAC  980

seq1  TTAGTTTTCCTGTCTCTGAAGACAAACTCATTGAGGGGGAAGGGAGTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCTGTCTCTGAAGACAAACTCATTGAGGGGGAAGGGAGTCAG  1030

seq1  AAGGTTCAGAGCTCAGCTCTTCTACTTCCTGGTTCTGGGTCATTCTTTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAGAGCTCAGCTCTTCTACTTCCTGGTTCTGGGTCATTCTTTGG  1080

seq1  CACATAATCTCTCTAGAGCTTTCAATTTCGTAACTCTAAAATAAATAAAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATCTCTCTAGAGCTTTCAATTTCGTAACTCTAAAATAAATAAAT  1130

seq1  AAATAATAAAACAAGGCATCCCGCTCCACCACTGAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAAACAAGGCATCCCGCTCCACCACTGAGAATTC  1171

seq1: chr19_58046298_58047429
seq2: B6Ng01-262C03.g_67_1191

seq1  GAATTCTTCACAGTTCATGTGTGCCCTCCCTCTCCCTTCCTCCTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAGTTCATGTGTGCCCTCCCTCTCCCTTCCTCCTCTCTCA  50

seq1  TCACCGATCATTGACACCTCTTTCTAGTCTTTTACTCGGTGATGTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGATCATTGACACCTCTTTCTAGTCTTTTACTCGGTGATGTTTGGA  100

seq1  GGAACTGCAATCATCCATCACAAAGGCTTCAGTAGAAATGGTGACTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAATCATCCATCACAAAGGCTTCAGTAGAAATGGTGACTTGTG  150

seq1  ACTGTTGTGGAGTGTTGTAGACTGGTGGTCATTGAGCTTCCGCTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTGGAGTGTTGTAGACTGGTGGTCATTGAGCTTCCGCTGAGAAA  200

seq1  TGAATAGCCTTAAGGTTTTTGAATGATTGGATATTTTAGTTTTTAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCCTTAAGGTTTTTGAATGATTGGATATTTTAGTTTTTAATATT  250

seq1  ATAGTTTAGAATAAATGATCAGCCCTGTTTGACCATTGCGAACTCCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAGAATAAATGATCAGCCCTGTTTGACCATTGCGAACTCCCATT  300

seq1  TTTAAAGCCATGCCTGGAATAAGGGCATTATGTCCAGTTCAGCTCCGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCATGCCTGGAATAAGGGCATTATGTCCAGTTCAGCTCCGCGT  350

seq1  GTATACTCGGGACATCTTTGCTTCCCAGCACCTCCTCCGCAGTCACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCGGGACATCTTTGCTTCCCAGCACCTCCTCCGCAGTCACACAG  400

seq1  CCTTAGCTAGCTGGCACGTGAATCTAATAGTTTAGTTTTTAAAATGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTAGCTGGCACGTGAATCTAATAGTTTAGTTTTTAAAATGTTGA  450

seq1  ATCAGCTTTTTGACACTTGGCTGGATTTTCTTACACTTGTATTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTTTTGACACTTGGCTGGATTTTCTTACACTTGTATTATTCTTT  500

seq1  TATTGTTTTCACAGAAAACCCCTAAATAAAATATCATCCGTTTCTTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTCACAGAAAACCCCTAAATAAAATATCATCCGTTTCTTAAAC  550

seq1  ACAATTTGTTGTACACAGAGTCTTCTATTACAAATAGATTATTTTGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGTTGTACACAGAGTCTTCTATTACAAATAGATTATTTTGACTT  600

seq1  GAGGAAACAATATTTTCTCCTCAATAAGAAATGTTTACCCAGTAACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAATATTTTCTCCTCAATAAGAAATGTTTACCCAGTAACTACC  650

seq1  TTTTTATGATGTTGCTTATTCCTTTGAATTGGATCTTTTTTAAGGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGATGTTGCTTATTCCTTTGAATTGGATCTTTTTTAAGGTTTTA  700

seq1  TAACCTTCCAGTTATAGTCCAATCTAAGAAAATAAACGCACGCCCTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCCAGTTATAGTCCAATCTAAGAAAATAAACGCACGCCCTGTAA  750

seq1  CACAATATGAAAAGTTATAATGTTTGAAATTTAAAAGACAAGCATACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATGAAAAGTTATAATGTTTGAAATTTAAAAGACAAGCATACACC  800

seq1  ATGTTCTTCAAATGATATGGGAAATCTGAAGGAATCCATGCAATAATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCAAATGATATGGGAAATCTGAAGGAATCCATGCAATAATTTG  850

seq1  CCTAAAGCAAAGTGTTGAGATAGAAAGAAACAACTCCAAGTGGCTTTAT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTAAAGCAAAGTGTTGAGATAGAAAGAAACAACTCCAAGTGGCTTTATG  900

seq1  GGAAGGAACTGAAATATGCTAGGGTATGTCATTCCTGCTGAAACATCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAACTGAAATATGCTAGGGTATGTCATTCCTGCTGAAACATCCAA  950

seq1  TTCAACTGTAGTTTAGTCAACTACCAAGTTAATCATAACTATAAGCACCA  999
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTCAACTGTAGTTTAGTC-ACTACCAAGTT-ATCATAACTATAAGCACCA  998

seq1  G-ATAATATATCTTGAAAATAACTGAGATGGGTCAAGAATTGCCCGTAAA  1048
      | |||||||||||||||||| |||||||| |||| ||| ||| |||||||
seq2  GAATAATATATCTTGAAAAT-ACTGAGAT-GGTC-AGATTTG-CCGTAAA  1044

seq1  TTCAGCACCGAAATCAGTTTCTCTGTAAAGGAGACCTTTGCCTGAGATGT  1098
       |||||| ||||||||| ||||||||||  |||| |||||||||| ||||
seq2  -TCAGCA-CGAAATCAG-TTCTCTGTAA--GAGA-CTTTGCCTGA-ATGT  1087

seq1  AAAGCATTG-ATTGCTCCCCC-TGATGTGC--AGGGAG  1132
      || |||||| || |||||||| ||||||||  ||||||
seq2  AAGGCATTGAATGGCTCCCCCTTGATGTGCCAAGGGAG  1125