BAC Information

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BAC

Clone NameB6Ng01-262K08
Chromosome19 (Build37)
Map Location 24,626,889 - 24,842,346
singlet/doubletdoublet
Overlap genePip5k1b, E030010A14Rik, Pgm5
Upstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457, 2900009I07Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262K08.bB6Ng01-262K08.g
ACCGA067005GA067006
length1,1441,088
definitionB6Ng01-262K08.b B6Ng01-262K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,841,200 - 24,842,346)(24,626,889 - 24,627,939)
sequence
gaattctgagcccacacaatcacttttttttttttttacatgcccctctg
tcagagccttatcttagcgggctcctgaagtatagacacttcctttggca
ccagagtggaagttcccctgtcaaagtctgatttacatttgtggaatatt
gactgtgtgtcatagtcatgatccacccagacttcagcacaccaaggctt
gccaaaacacagaggcatactggaggccacaggagcatgaaatgtgcggg
cggaatttgtgttcaggctattgtaagtaagagacgtaaggccacctcac
tgtgctgacagcttccctcagtcagtgcatgagaagtcatcagggaaggg
aaaacaacccccttcattggcatagacacggaatccaactctttacatac
ataacccagactatcacacggtgggctttctgggtggtacatgtctgaac
cctggaccagctaatactatctgatgatttcttgcatgttgtatataatg
tgtattggaattgttactgtgaataatatatttttttctacaggttgccc
agtgtatgatttaccccttgtctactgtgtccacttagacactactcact
tagtggtcatttctgctatcattcaaataagggcatctcaatgtgttaag
taacccttatttcacttaattaggccttggagcttgtagagtggtggctg
gctgcagtgtttgttctttattcttctaattgaattcttcaaatcgattg
tttaatattagttgttatattttgttattagttattgttgccaatctctt
tttgtgcctaatttatgcactaaactaccacaggtatatatttataagaa
aatcgtaacacaccttatacagggtctgacaacctctgaaagttcccaca
accctctgggcaccttggaagataccctggataagtggaggacactaatt
tttcctcaacacagtgtttctattaccctttcctaaaacaatctcccaca
taagaaatgcttacgtggtagaaatcagactctttgctcgaataagcagt
ataactcagattactcagaagaagctttgaaatttcacatttaatgactg
cttgggcgattgttggaagtttgtgaagcaccagcttcagaagc
gaattctttttttttttgtcctttttgtgtttttattttttttctctttt
ttttaaattgggtatttatttcaattacatttccaatgctatcccaaaag
tcccccccacactcccccacccacccactcccacttcttggccctggagt
tcccctgtactgaggcatataaagtttgcatgaccaatgggcctctcttt
cccaatggtggccaactaggccatcttctgattcatatgcagctagagac
acgagctctggggggtactggttagttcatattgttgttccacctatagg
attgcagatccctttagctccttgggtactttctctagctcctccactgg
gggccctgtgatccatccaatacctgactgtgagcatccacttaattctt
aaagggaacagaaagtaggttggtttcactaattaggttcctcctccaaa
accacaaggcaatgttaagtgtacctcagcacccttgagtaaaaaggagt
ggttggagcccggcatggtggcgcatgcctttaatcccagcactccggag
gcagaggcaggtggatttctgagttcgaggccagcctggtctacagagtg
agttccaggacagccaggtctatacagagaaaccctgtctcgaaaaacca
aaaaaaaaaggagtggttgtcttctctatctctcgacatgcttctttcat
aaaatggcacaagcccggttttctagggatgtatcctttaggcagctata
tgttcctgacggggaggtggaagggcacaagaaagagacagctgtttcca
caactcaagagacaacatggggtgatccacagtggggctccagtccccgc
acttcaagaaggcgcaactcaccctctcaccagggaaatcatccctgtgg
ctgggaacttacatgcaaggtgctggtgtcttttataataaccaggcttg
tccttaatgaaatggagtccattcaccccccattaacttaacagcccacg
aggacaggcttatttactttaatgctaaacacatgcttcgaaaaaaaggt
gctattgccaatactcaattcattactttgaaagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24841200_24842346
seq2: B6Ng01-262K08.b_43_1186 (reverse)

seq1  GCTTCTTGAAAGCTGGTGCTTCACACCCTTTCTGACATCGCCCAAGCAGT  50
      ||||||   ||||||||||||||||  ||| |    ||||||||||||| 
seq2  GCTTCT--GAAGCTGGTGCTTCACAAACTTCCAACAATCGCCCAAGCAG-  47

seq1  TCATTAAATGTG-AATTTCAAGGCCTCTCTCCTGAGTAATTCTGAGTTAT  99
      |||||||||||| |||||||| ||   ||| |||||||| ||||||||||
seq2  TCATTAAATGTGAAATTTCAAAGC--TTCTTCTGAGTAA-TCTGAGTTAT  94

seq1  ACTGCTTTATCGGAGCCAAGGAGTCTGGATTTCTACCACGT-AGCATTTC  148
      ||||| ||||  ||| ||| |||||| |||||||||||||| ||||||||
seq2  ACTGC-TTATTCGAG-CAAAGAGTCT-GATTTCTACCACGTAAGCATTTC  141

seq1  TTATGTGGGGAGATTGTTTTAGG-AAGGGT-ATAG-AACACTGTGTTGAG  195
      |||||| |||||||||||||||| |||||| |||| ||||||||||||||
seq2  TTATGT-GGGAGATTGTTTTAGGAAAGGGTAATAGAAACACTGTGTTGAG  190

seq1  G-AAAATTAGTGTCCTCCACTTATCCAGGGTATCTTCCAAGGTGCCCAGA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAGTGTCCTCCACTTATCCAGGGTATCTTCCAAGGTGCCCAGA  240

seq1  -GGTTGTGGGAACTTTCAGAGGTTGTCAGACCCTGTATAAGGTGTGTTAC  293
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGGGAACTTTCAGAGGTTGTCAGACCCTGTATAAGGTGTGTTAC  290

seq1  GATTTTCTTATAAATATATACCTGTGGTAGTTTAGTGCATAAATTAGGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTATAAATATATACCTGTGGTAGTTTAGTGCATAAATTAGGCA  340

seq1  CAAAAAGAGATTGGCAACAATAACTAATAACAAAATATAACAACTAATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAGATTGGCAACAATAACTAATAACAAAATATAACAACTAATAT  390

seq1  TAAACAATCGATTTGAAGAATTCAATTAGAAGAATAAAGAACAAACACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATCGATTTGAAGAATTCAATTAGAAGAATAAAGAACAAACACTG  440

seq1  CAGCCAGCCACCACTCTACAAGCTCCAAGGCCTAATTAAGTGAAATAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCACCACTCTACAAGCTCCAAGGCCTAATTAAGTGAAATAAGG  490

seq1  GTTACTTAACACATTGAGATGCCCTTATTTGAATGATAGCAGAAATGACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAACACATTGAGATGCCCTTATTTGAATGATAGCAGAAATGACC  540

seq1  ACTAAGTGAGTAGTGTCTAAGTGGACACAGTAGACAAGGGGTAAATCATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGAGTAGTGTCTAAGTGGACACAGTAGACAAGGGGTAAATCATA  590

seq1  CACTGGGCAACCTGTAGAAAAAAATATATTATTCACAGTAACAATTCCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCAACCTGTAGAAAAAAATATATTATTCACAGTAACAATTCCAA  640

seq1  TACACATTATATACAACATGCAAGAAATCATCAGATAGTATTAGCTGGTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTATATACAACATGCAAGAAATCATCAGATAGTATTAGCTGGTC  690

seq1  CAGGGTTCAGACATGTACCACCCAGAAAGCCCACCGTGTGATAGTCTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCAGACATGTACCACCCAGAAAGCCCACCGTGTGATAGTCTGGG  740

seq1  TTATGTATGTAAAGAGTTGGATTCCGTGTCTATGCCAATGAAGGGGGTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTAAAGAGTTGGATTCCGTGTCTATGCCAATGAAGGGGGTTG  790

seq1  TTTTCCCTTCCCTGATGACTTCTCATGCACTGACTGAGGGAAGCTGTCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTCCCTGATGACTTCTCATGCACTGACTGAGGGAAGCTGTCAG  840

seq1  CACAGTGAGGTGGCCTTACGTCTCTTACTTACAATAGCCTGAACACAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGGTGGCCTTACGTCTCTTACTTACAATAGCCTGAACACAAAT  890

seq1  TCCGCCCGCACATTTCATGCTCCTGTGGCCTCCAGTATGCCTCTGTGTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCGCACATTTCATGCTCCTGTGGCCTCCAGTATGCCTCTGTGTTT  940

seq1  TGGCAAGCCTTGGTGTGCTGAAGTCTGGGTGGATCATGACTATGACACAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCCTTGGTGTGCTGAAGTCTGGGTGGATCATGACTATGACACAC  990

seq1  AGTCAATATTCCACAAATGTAAATCAGACTTTGACAGGGGAACTTCCACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATTCCACAAATGTAAATCAGACTTTGACAGGGGAACTTCCACT  1040

seq1  CTGGTGCCAAAGGAAGTGTCTATACTTCAGGAGCCCGCTAAGATAAGGCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCAAAGGAAGTGTCTATACTTCAGGAGCCCGCTAAGATAAGGCT  1090

seq1  CTGACAGAGGGGCATGTAAAAAAAAAAAAAAGTGATTGTGTGGGCTCAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGGGGCATGTAAAAAAAAAAAAAAGTGATTGTGTGGGCTCAGA  1140

seq1  ATTC  1147
      ||||
seq2  ATTC  1144

seq1: chr19_24626889_24627939
seq2: B6Ng01-262K08.g_69_1141

seq1  GAATTCTTTTTTTTTTTGTCCTTTTTGTGTTTTTATTTTTTTTCTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTGTCCTTTTTGTGTTTTTATTTTTTTTCTCTTTT  50

seq1  TTTTAAATTGGGTATTTATTTCAATTACATTTCCAATGCTATCCCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTGGGTATTTATTTCAATTACATTTCCAATGCTATCCCAAAAG  100

seq1  TCCCCCCCACACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCACACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGGAGT  150

seq1  TCCCCTGTACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTCTTT  200

seq1  CCCAATGGTGGCCAACTAGGCCATCTTCTGATTCATATGCAGCTAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGTGGCCAACTAGGCCATCTTCTGATTCATATGCAGCTAGAGAC  250

seq1  ACGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGG  300

seq1  ATTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGG  350

seq1  GGGCCCTGTGATCCATCCAATACCTGACTGTGAGCATCCACTTAATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGATCCATCCAATACCTGACTGTGAGCATCCACTTAATTCTT  400

seq1  AAAGGGAACAGAAAGTAGGTTGGTTTCACTAATTAGGTTCCTCCTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACAGAAAGTAGGTTGGTTTCACTAATTAGGTTCCTCCTCCAAA  450

seq1  ACCACAAGGCAATGTTAAGTGTACCTCAGCACCCTTGAGTAAAAAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGGCAATGTTAAGTGTACCTCAGCACCCTTGAGTAAAAAGGAGT  500

seq1  GGTTGGAGCCCGGCATGGTGGCGCATGCCTTTAATCCCAGCACTCCGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGCCCGGCATGGTGGCGCATGCCTTTAATCCCAGCACTCCGGAG  550

seq1  GCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  600

seq1  AGTTCCAGGACAGCCAGGTCTATACAGAGAAACCCTGTCTCGAAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGGTCTATACAGAGAAACCCTGTCTCGAAAAACCA  650

seq1  AAAAAAAAAGGAGTGGTTGTCTTCTCTATCTCTCGACATGC-TCTTTCAT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAAAAAAGGAGTGGTTGTCTTCTCTATCTCTCGACATGCTTCTTTCAT  700

seq1  AAAATGGCACAAGCC--GGTTTCTAGGGATGTATCCTTTAGGCAGCTATA  747
      |||||||||||||||  | |||||||||||||||||||||||||||||||
seq2  AAAATGGCACAAGCCCGGTTTTCTAGGGATGTATCCTTTAGGCAGCTATA  750

seq1  TGTTCCTGAC-GGGAGGTGGAAGGGCACAAGAAAGAGACAGCTGTTT-CA  795
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TGTTCCTGACGGGGAGGTGGAAGGGCACAAGAAAGAGACAGCTGTTTCCA  800

seq1  CAACTCAGGAGACAACAT-GGGTGATCCACAGT-GGGCTCCAGTCCCCGC  843
      ||||||| |||||||||| |||||||||||||| ||||||||||||||||
seq2  CAACTCAAGAGACAACATGGGGTGATCCACAGTGGGGCTCCAGTCCCCGC  850

seq1  ACTTC-AGAAGGCGCAACTCA-CCTCTCA-CAGGGAAATCATCCCTGT-G  889
      ||||| ||||||||||||||| ||||||| |||||||||||||||||| |
seq2  ACTTCAAGAAGGCGCAACTCACCCTCTCACCAGGGAAATCATCCCTGTGG  900

seq1  CTGGGAACTTACATGCAAGGTGCT-GTGTCTTTTATAAT-AGCAGGC-TG  936
      |||||||||||||||||||||||| |||||||||||||| | ||||| ||
seq2  CTGGGAACTTACATGCAAGGTGCTGGTGTCTTTTATAATAACCAGGCTTG  950

seq1  TCCTT-ATGAA--TGAGTCCATTCA-CCCCCATTAACTTAACAG-CCACG  981
      ||||| |||||   ||||||||||| |||||||||||||||||| |||||
seq2  TCCTTAATGAAATGGAGTCCATTCACCCCCCATTAACTTAACAGCCCACG  1000

seq1  AGGACAGGCTTATTTACTAT-ATGC-AAACACAAAGCTTCAAAAAAAAAG  1029
      |||||||||||||||||| | |||| |||||| | ||||| ||||||| |
seq2  AGGACAGGCTTATTTACTTTAATGCTAAACAC-ATGCTTCGAAAAAAAGG  1049

seq1  TGC-ATATGCAATAC-CAATTCAT  1051
      ||| ||   |||||| ||||||||
seq2  TGCTATTGCCAATACTCAATTCAT  1073