BAC Information

Click to search

BAC

Clone NameB6Ng01-263N08
Chromosome19 (Build37)
Map Location 48,502,502 - 48,634,753
singlet/doubletdoublet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263N08.bB6Ng01-263N08.g
ACCGA067899GA067900
length1,118928
definitionB6Ng01-263N08.b B6Ng01-263N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,633,637 - 48,634,753)(48,502,502 - 48,503,417)
sequence
gaattctctaaaatcacgacttccggcttcctgaaaacaagcagctgcct
taaaccagaagcccagctgtcttaaaccggaagcccagaaaccagatcta
gggtgcagctggtcagctctagagctgaggtacagatatcccctatttgt
tgtgtatgagttaattaaggaaagaaaatgttgagagcaaattaaaccca
ggagcgacaacacaacagaaaacatcttccaacaagaatatataaaatca
cccccaaacctagaaacattaatgaaaacaggagtttcttgactaaataa
tcatttacattctattcttctcttctccttgctagtttttatagccgcac
aagcgtaggtataacaagaaaaagaaacccaaaaggactctacagagggt
cacaggaagaattgaaatgccaacagcgtcatagctcatgcattgtcatg
acaccccctcacccaatctgtttatcttcccacaggaaggagaagaaatt
tgataatctgagtgttgctgtcttcagctctgtaattagagaacatggga
cctgatgaattgcaaatggagtctgaaccctagcttgtgacttaatgagc
aagatgggccagtcacagacgtccacactccatattaatcaaagactgat
gatgcttccctgggaagttgtcctatgtgatgtatgatcctattaaccaa
ctattacccggtttgcctcctccacctgagacccctggatcctctagctc
tgagtctcaacaaccaggcattaagaaaagcaagagttcacaactctgaa
gatggctttagtcaagagtaaaggacatgccccagtcttagaaaagttaa
gaagaggatggaaggcaaaataagtacccagtaggagaaggcaatctgag
ttggcacaaccaataaaggattccaggactcaggaaattgttctctgccc
atctgtgaggtcttcaaaattctatagtactgggctacttctaagagaga
taccaacaaatggttcttacatctatatacctcctcccatctggttacat
agcatactgtaagctttctgtagtttcttttactgtaacaggaaagaaaa
tgatgccagatcaaacag
gaattccttttcaaatttgtgaactgagactgaagaatacgagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagtttttagaaagatatcaattctgcccattctggat
acctgctgaggtgaaagaagggagatcccaaaatgatacacaggcttgga
atgggggctgtacttgtttaggcctcttaaaccccactgagagggcatga
gtttttacccccttgcaactttttagagtcctgagtgggacatagttaac
actttaggtgaggtggcagtcctctatttccttttcttacaatgtccatg
gatgctaaatataactcagcgcccatcagcttggctggatgaagcacaca
gactttacagcctgtcaaccaaatcctagcccaaaactctgtgcccaaga
caataatattagtgtagttgtaactgtctcatgaagcttttaatggctgt
cccttggtatctataagggattagaccaagaaccttctaaagatctctaa
agtcatcaacaaagccaccattaccatctctctagtgacccttgactgtt
ggctgttgttcttctgtctctagggttttggctcattgtcagtaactgga
ggggttctcgcagtgaggtgcccctgagagtctgtctgctaggatctttg
tggaagggaaggaaataagagggtttggtgttagattgaatgtgcatcag
gataacctgacttcagtgggatgataatcctcaaactccattctgggttc
catcctttcagattcgtaggactctggttctggaagttgaagaacatgct
tgtcatatcctctgcccctctccttcttctttcttccttcttaggataga
ggatgggaaataagaatgaaggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48633637_48634753
seq2: B6Ng01-263N08.b_46_1163 (reverse)

seq1  CTGTTTGAATCT-GCATCATTTTTCTTTCTG-TACAGTAAAAGAAACTAC  48
      ||||||| |||| ||||||||||  || ||| ||||||||||||||||||
seq2  CTGTTTG-ATCTGGCATCATTTTCTTTCCTGTTACAGTAAAAGAAACTAC  49

seq1  AGAAAGCTTACAAGTATGCTATGTAACCAGATGGGAGGAGGTATATAGAT  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTTAC-AGTATGCTATGTAACCAGATGGGAGGAGGTATATAGAT  98

seq1  GTAAGAACCATTTTGTTTGGTTATCTCTCTTAG-AGTAGCCCAGTACTAT  147
      |||||||||| ||||||  | |||||||||||| ||||||||||||||||
seq2  GTAAGAACCA-TTTGTT--GGTATCTCTCTTAGAAGTAGCCCAGTACTAT  145

seq1  AGAATTTTGAAGACCTCACAGATGGGCAGAGAACAATTT-CTGAGT-CTG  195
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  AGAATTTTGAAGACCTCACAGATGGGCAGAGAACAATTTCCTGAGTCCTG  195

seq1  GAATCC-TTATTGGTTGTGCCAACTCAGATTGCCTTCTCCTACTGGGTAC  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTATTGGTTGTGCCAACTCAGATTGCCTTCTCCTACTGGGTAC  245

seq1  TTATTTTGCCTTCCATCCTCTTCTTAACTTTTCTAAGACTGGGGCATGTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGCCTTCCATCCTCTTCTTAACTTTTCTAAGACTGGGGCATGTC  295

seq1  CTTTACTCTTGACTAAAGCCATCTTCAGAGTTGTGAACTCTTGCTTTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCTTGACTAAAGCCATCTTCAGAGTTGTGAACTCTTGCTTTTCT  345

seq1  TAATGCCTGGTTGTTGAGACTCAGAGCTAGAGGATCCAGGGGTCTCAGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTGGTTGTTGAGACTCAGAGCTAGAGGATCCAGGGGTCTCAGGT  395

seq1  GGAGGAGGCAAACCGGGTAATAGTTGGTTAATAGGATCATACATCACATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCAAACCGGGTAATAGTTGGTTAATAGGATCATACATCACATA  445

seq1  GGACAACTTCCCAGGGAAGCATCATCAGTCTTTGATTAATATGGAGTGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTCCCAGGGAAGCATCATCAGTCTTTGATTAATATGGAGTGTG  495

seq1  GACGTCTGTGACTGGCCCATCTTGCTCATTAAGTCACAAGCTAGGGTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTGTGACTGGCCCATCTTGCTCATTAAGTCACAAGCTAGGGTTCA  545

seq1  GACTCCATTTGCAATTCATCAGGTCCCATGTTCTCTAATTACAGAGCTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATTTGCAATTCATCAGGTCCCATGTTCTCTAATTACAGAGCTGA  595

seq1  AGACAGCAACACTCAGATTATCAAATTTCTTCTCCTTCCTGTGGGAAGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAACACTCAGATTATCAAATTTCTTCTCCTTCCTGTGGGAAGAT  645

seq1  AAACAGATTGGGTGAGGGGGTGTCATGACAATGCATGAGCTATGACGCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTGGGTGAGGGGGTGTCATGACAATGCATGAGCTATGACGCTG  695

seq1  TTGGCATTTCAATTCTTCCTGTGACCCTCTGTAGAGTCCTTTTGGGTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTTCAATTCTTCCTGTGACCCTCTGTAGAGTCCTTTTGGGTTTC  745

seq1  TTTTTCTTGTTATACCTACGCTTGTGCGGCTATAAAAACTAGCAAGGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTTATACCTACGCTTGTGCGGCTATAAAAACTAGCAAGGAGA  795

seq1  AGAGAAGAATAGAATGTAAATGATTATTTAGTCAAGAAACTCCTGTTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAATAGAATGTAAATGATTATTTAGTCAAGAAACTCCTGTTTTC  845

seq1  ATTAATGTTTCTAGGTTTGGGGGTGATTTTATATATTCTTGTTGGAAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTTCTAGGTTTGGGGGTGATTTTATATATTCTTGTTGGAAGAT  895

seq1  GTTTTCTGTTGTGTTGTCGCTCCTGGGTTTAATTTGCTCTCAACATTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTGTGTTGTCGCTCCTGGGTTTAATTTGCTCTCAACATTTTC  945

seq1  TTTCCTTAATTAACTCATACACAACAAATAGGGGATATCTGTACCTCAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAATTAACTCATACACAACAAATAGGGGATATCTGTACCTCAGC  995

seq1  TCTAGAGCTGACCAGCTGCACCCTAGATCTGGTTTCTGGGCTTCCGGTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGCTGACCAGCTGCACCCTAGATCTGGTTTCTGGGCTTCCGGTTT  1045

seq1  AAGACAGCTGGGCTTCTGGTTTAAGGCAGCTGCTTGTTTTCAGGAAGCCG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTGGGCTTCTGGTTTAAGGCAGCTGCTTGTTTTCAGGAAGCCG  1095

seq1  GAAGTCGTGATTTTAGAGAATTC  1117
      |||||||||||||||||||||||
seq2  GAAGTCGTGATTTTAGAGAATTC  1118

seq1: chr19_48502502_48503417
seq2: B6Ng01-263N08.g_66_993

seq1  GAATTCCTTTTCAAATTTGTGAACTGAGACTGAAGAATACGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCAAATTTGTGAACTGAGACTGAAGAATACGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGTTTTTAGAAAGATATCAATTCTGCCCATTCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGTTTTTAGAAAGATATCAATTCTGCCCATTCTGGAT  150

seq1  ACCTGCTGAGGTGAAAGAAGGGAGATCCCAAAATGATACACAGGCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGGTGAAAGAAGGGAGATCCCAAAATGATACACAGGCTTGGA  200

seq1  ATGGGGGCTGTACTTGTTTAGGCCTCTTAAACCCCACTGAGAGGGCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCTGTACTTGTTTAGGCCTCTTAAACCCCACTGAGAGGGCATGA  250

seq1  GTTTTTACCCCCTTGCAACTTTTTAGAGTCCTGAGTGGGACATAGTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACCCCCTTGCAACTTTTTAGAGTCCTGAGTGGGACATAGTTAAC  300

seq1  ACTTTAGGTGAGGTGGCAGTCCTCTATTTCCTTTTCTTACAATGTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGTGAGGTGGCAGTCCTCTATTTCCTTTTCTTACAATGTCCATG  350

seq1  GATGCTAAATATAACTCAGCGCCCATCAGCTTGGCTGGATGAAGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAATATAACTCAGCGCCCATCAGCTTGGCTGGATGAAGCACACA  400

seq1  GACTTTACAGCCTGTCAACCAAATCCTAGCCCAAAACTCTGTGCCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACAGCCTGTCAACCAAATCCTAGCCCAAAACTCTGTGCCCAAGA  450

seq1  CAATAATATTAGTGTAGTTGTAACTGTCTCATGAAGCTTTTAATGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTAGTGTAGTTGTAACTGTCTCATGAAGCTTTTAATGGCTGT  500

seq1  CCCTTGGTATCTATAAGGGATTAGACCAAGAACCTTCTAAAGATCTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTATCTATAAGGGATTAGACCAAGAACCTTCTAAAGATCTCTAA  550

seq1  AGTCATCAACAAAGCCACCATTACCATCTCTCTAGTGACCCTTGACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAACAAAGCCACCATTACCATCTCTCTAGTGACCCTTGACTGTT  600

seq1  GGCTGTTGTTCTTCTGTCTCTAGGGTTTTGGCTCATTGTCAGTAACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGTTCTTCTGTCTCTAGGGTTTTGGCTCATTGTCAGTAACTGGA  650

seq1  GGGGTTCTCGCAGTGAGGTGCCCCTGAGAGTCTGTCTGCTAGGATCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTCGCAGTGAGGTGCCCCTGAGAGTCTGTCTGCTAGGATCTTTG  700

seq1  TGGAAGGGAAGGAAATAAGAGGGTTTGGTGTTAGATTGAATGTGCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGAAGGAAATAAGAGGGTTTGGTGTTAGATTGAATGTGCATCAG  750

seq1  GATAACCTGACTTCAGT-GGATGATAATCCTCAAACTCCATTCTGGGTTC  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATAACCTGACTTCAGTGGGATGATAATCCTCAAACTCCATTCTGGGTTC  800

seq1  CATCC-TTCAGATTCGTAGGACTCTGGTTCTGGAAGTTG-AGAACATGC-  846
      ||||| ||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CATCCTTTCAGATTCGTAGGACTCTGGTTCTGGAAGTTGAAGAACATGCT  850

seq1  TGTCATATCCTCTGCCCCTCTCC-TCTTCTTTC-TCCT--CTAAGATAGA  892
      ||||||||||||||||||||||| ||||||||| ||||   || ||||||
seq2  TGTCATATCCTCTGCCCCTCTCCTTCTTCTTTCTTCCTTCTTAGGATAGA  900

seq1  GGAT-GGAAAT---AAAGAAGGAAGGAA  916
      |||| ||||||   || |||||||||||
seq2  GGATGGGAAATAAGAATGAAGGAAGGAA  928