BAC Information

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BAC

Clone NameB6Ng01-263N16
Chromosome19 (Build37)
Map Location 35,496,498 - 35,497,398
singlet/doubletsinglet
Overlap geneLOC100042292
Upstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263N16.bB6Ng01-263N16.g
ACCGA067915GA067916
length1,198906
definitionB6Ng01-263N16.b B6Ng01-263N16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcttgtacaaccactctggaaatttgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggga
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagaaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggatcaacattatgaactaaccagtaccccggagctctgactct
agctgcatatgtatcaaagatgacctagtcgcatcactgaagagagccca
tgacacacaactttatatggctcagaacaggacggcagggtcaaaaggga
tgacggttagggagtggctcccatgatgctacgactggtgactagacg
gaattctttattcaggaccaatcaagtgctaatcctttcaccaattcaag
agaactgatataaaaataacaatattgggctcattattttcaattgctaa
aaagtaaatataaagtgaaagtatttataacattcgacttttaagtaatt
tctataggtgaacaacaagaagaattaccatggactaatcagaaattgca
atgattggcagctaatgaaatatcttcaatatgtaaaaagaaaactttgt
gaacctagaattcaatatttaacaaaaccaccacttaatattgaaactaa
aagaatgataattttagacaaaggaaaaaaatcataccaataactcacta
ggtgctaatggataaatatttctaagtaaaaggcagagattattgaagca
atgtaaaaaacaaaaaaccaaaaatatcccaacaaaacaaaacaaaaaac
atagaaagcacagcagtgacaggcagagactagagattaagctgcaaaaa
cagagacccttcctcaaaaagtactcctctctcatatgctgtctgttaga
aatatactttatggttttttttttccattttttattaggtatttagctca
tttacatttccaatgctataccaaaagtcccccatacccacccaccccca
ctcccctacccacccactccccctttttggccctggcgttcccctatact
ggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggc
cgactaggccatcttttgatacatcagcatccaaactctgacccattgcg
atacactagcaagaatttattgaaaggacccagatgtagctgtcatcttg
ctagactaatgctggggcctagcctaacacacaagtgggatgccccccag
tcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35496498_35497398
seq2: B6Ng01-263N16.g_67_972 (reverse)

seq1  AGCTGACT-GTGAGCAT-CCACTTCTGTGTT-TGCTAGGCCCCAGCA-TA  46
      |||||||| | | |||| |||||| ||||||  |||||||||||||| ||
seq2  AGCTGACTGGGGGGCATCCCACTTGTGTGTTAGGCTAGGCCCCAGCATTA  50

seq1  GTCTCGCAAGA-GACAGCTACATCTGGGTCCTTTCAATAAAATCTTGCTA  95
      |||| |||||| ||||||||||||||||||||||||||||| ||||||||
seq2  GTCTAGCAAGATGACAGCTACATCTGGGTCCTTTCAATAAATTCTTGCTA  100

seq1  GTGTAT-GCAATGGTGTCAGCGTTTGGATGCTGATGTATCAAAAGATGGC  144
      |||||| ||||||| ||||| |||||||||||||||||||||||||||||
seq2  GTGTATCGCAATGG-GTCAGAGTTTGGATGCTGATGTATCAAAAGATGGC  149

seq1  CTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTAT  199

seq1  ATGCCCCAGTATAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCAGTATAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGT  249

seq1  AGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAA  299

seq1  ATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAACCATAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAACCATAAA  349

seq1  GTATATTTCTAACAGACAGCATATGAGAGAGGAGTACTTTTTGAGGAAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTCTAACAGACAGCATATGAGAGAGGAGTACTTTTTGAGGAAGG  399

seq1  GTCTCTGTTTTTGCAGCTTAATCTCTAGTCTCTGCCTGTCACTGCTGTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTTTTTGCAGCTTAATCTCTAGTCTCTGCCTGTCACTGCTGTGC  449

seq1  TTTCTATGTTTTTTGTTTTGTTTTGTTGGGATATTTTTGGTTTTTTGTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTTTTTTGTTTTGTTTTGTTGGGATATTTTTGGTTTTTTGTTT  499

seq1  TTTACATTGCTTCAATAATCTCTGCCTTTTACTTAGAAATATTTATCCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGCTTCAATAATCTCTGCCTTTTACTTAGAAATATTTATCCAT  549

seq1  TAGCACCTAGTGAGTTATTGGTATGATTTTTTTCCTTTGTCTAAAATTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTAGTGAGTTATTGGTATGATTTTTTTCCTTTGTCTAAAATTAT  599

seq1  CATTCTTTTAGTTTCAATATTAAGTGGTGGTTTTGTTAAATATTGAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTAGTTTCAATATTAAGTGGTGGTTTTGTTAAATATTGAATTC  649

seq1  TAGGTTCACAAAGTTTTCTTTTTACATATTGAAGATATTTCATTAGCTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCACAAAGTTTTCTTTTTACATATTGAAGATATTTCATTAGCTGC  699

seq1  CAATCATTGCAATTTCTGATTAGTCCATGGTAATTCTTCTTGTTGTTCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTGCAATTTCTGATTAGTCCATGGTAATTCTTCTTGTTGTTCAC  749

seq1  CTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCACTTTATAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAATTACTTAAAAGTCGAATGTTATAAATACTTTCACTTTATAT  799

seq1  TTACTTTTTAGCAATTGAAAATAATGAGCCCAATATTGTTATTTTTATAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTAGCAATTGAAAATAATGAGCCCAATATTGTTATTTTTATAT  849

seq1  CAGTTCTCTTGAATTGGTGAAAGGATTAGCACTTGATTGGTCCTGAATAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTTGAATTGGTGAAAGGATTAGCACTTGATTGGTCCTGAATAA  899

seq1  AGAATTC  901
      |||||||
seq2  AGAATTC  906