BAC Information

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BAC

Clone NameB6Ng01-264B01
Chromosome19 (Build37)
Map Location 7,905,149 - 7,905,644
singlet/doubletsinglet
Overlap geneLOC632903
Upstream geneRps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805
Downstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264B01.bB6Ng01-264B01.g
ACCGA068069GA068070
length1,087490
definitionB6Ng01-264B01.b B6Ng01-264B01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagtcttttatcatgaataggcattggattttg
taaaatgctttctctgcagctaacgagatgatcatgtgatttttgtcttt
gagtttgtttatatagtggattacgttgatggatttccgtatattaaacc
atccctgcttccctagaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttcttggattcacatagtgataattttattgagtatttttgc
atcgatattcataagagaaattggtctgaaattctctatctttgttggat
atttctgtggtttaggtatcagagtaattgtggctttatagaatgagttg
ggtagagtaccttctactgctattttgtggaatagtttgtgcggaactgg
aattagaccttcttcgaaggtcttatagaactctgcactaaactcttctg
gtcctgggctttttttttcgttgggagactattaatgacttcttctattt
ctttaggaaatttgggactgtttagatcgttaactagattctggtttaac
tttggtacctggtatctgtctagaaatttgtccatttcgtccaggttttc
caggtttgttgagtatagccttttgtagaaggatctgatggtgttttcga
tttcttcaggacctgttgttatgtctcctttttcatttctgattttatta
attaggatgctgtccctgtgccctctagtgagtctggctaacagtttatc
tatcttgttgattttctcaaagaatcagttcctccattgtttgattcttt
gaatagtacttcttctttccacttggttgattttgcccctgagtttgatt
tatttcctgccatctactcctcttgggtgaatttgcttccttttttttct
agagtttttaggcgtgttgtcaagctgctagtgtcttgctctctctagtt
tcttttgggaggcactcagagcctatgtgtttcccttcttagaaatgcat
ttattgtgttcccaataactttgagtatgtgtggcttcattcgtctttct
tttttttttttggtggctatcgggtattattacttat
aaggacaccacaagaaaatatagagaatcaatgaacttgtgcccagaggg
acgcacagaaactaaaccaccaaagagagtgtgcatgagatggatggagg
ccctgtgcacatgtttactagttgtgcagtttggtcttcatttggggctc
ctaacagcaggagcatggctgtctctgacactgttgcctgcctttagtca
atttccctaaactgggctaacttgcctagccacaatgtgaaaagatgaac
ctagacttacagcaacttggaggactcctcttttctgaggagaaagggag
gacaagaaggtaagggagagagaaggggagagtgaaggatcaggaggaga
ggagataggggaatctaaaatccgaatgtaaaattaattaattaattaat
aatttttaaatgtagtcattgaatattgtgtttctcaaatcatgcatttg
atactagtagtcactaaacacagactgaccattctattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7905149_7905644
seq2: B6Ng01-264B01.g_64_559 (reverse)

seq1  TTAATAGAATGGTCTGTCTGTGTTTAGTGACTACTAGTATCAAATGCATG  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAATAGAATGGTCAGTCTGTGTTTAGTGACTACTAGTATCAAATGCATG  50

seq1  ATTTGAGAAACACAATATTCAATGACTACATTTAAAAATTATTAATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAAACACAATATTCAATGACTACATTTAAAAATTATTAATTAAT  100

seq1  TAATTAATTTTACATTCTGATTTTAGATTCCCCTATCTCCTCTCCTCCTG  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAATTAATTTTACATTCGGATTTTAGATTCCCCTATCTCCTCTCCTCCTG  150

seq1  ATCCTTCACTCTCCCCTTCTCTCTCCCTTACCTTCTTGTCCTCCCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCACTCTCCCCTTCTCTCTCCCTTACCTTCTTGTCCTCCCTTTCT  200

seq1  CCTCAGAAAAGAGGAGTCCTCCAAGTTGCTGTAAGTCTAGGTTCATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAAGAGGAGTCCTCCAAGTTGCTGTAAGTCTAGGTTCATCTTT  250

seq1  TCACATTGTGGCTAGGCAAGTTAGCCCAGTTTAGGGAAATTGACTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGTGGCTAGGCAAGTTAGCCCAGTTTAGGGAAATTGACTAAAGG  300

seq1  CAGGCAACAGTGTCAGAGACAGCCATGCTCCTGCTGTTAGGAGCCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACAGTGTCAGAGACAGCCATGCTCCTGCTGTTAGGAGCCCCAAA  350

seq1  TGAAGACCAAACTGCACAACTAGTAAACATGTGCACAGGGCCTCCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCAAACTGCACAACTAGTAAACATGTGCACAGGGCCTCCATCCA  400

seq1  TCTCATGCACACTCTCTTTGGTGGTTTAGTTTCTGTGCGTCCCTCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCACACTCTCTTTGGTGGTTTAGTTTCTGTGCGTCCCTCTGGGC  450

seq1  ACAAGTTCATTGATTCTCTATATTTTCTTGTGGTGTCCTTGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCATTGATTCTCTATATTTTCTTGTGGTGTCCTTGAATTC  496