BAC Information

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BAC

Clone NameB6Ng01-264F03
Chromosome19 (Build37)
Map Location 20,499,491 - 20,698,257
singlet/doubletdoublet
Overlap geneE030003E18Rik, EG626549, Aldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264F03.bB6Ng01-264F03.g
ACCGA068254GA068255
length5691,108
definitionB6Ng01-264F03.b B6Ng01-264F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,499,491 - 20,500,065)(20,697,151 - 20,698,257)
sequence
agtaaaaataaagggacctctccagtcagatatgggttttctagaaataa
tcttgtactgaaatgggctaaggaggaaccaaatctaagtttgcatggaa
agtttaaattttctagaaaacctatagctaataacacatgcttttctatg
acaataggaaaacacaaaataagatctataataacagattatagatgatt
cttcctattattacctctattactattattattattatgttatttgttat
tagatctcttcttttgactgacacatctcaccacactcgtttcaatactg
cccttcttgtttaaaagtgttttaaagacattatttaatgtatctgttcc
aagggcaggaaatctgttctagcatctttattgcctatgttccctttcaa
tattaaagtgggcttcaaagttcatgctagccccagttctccctccccct
cccactctccctctccccttccatctctccctctccccctctcccgctcc
ccctccatctctccctctccccctccccttctctctctctctctctctct
ctctctctctctctctctc

gaattctgttcacgagacttgaataatgtaagtgacagattacagggtga
ttggttgattacaagcctctgagtctggcttcctgtcgttatttaggtgg
agatacattcgtgctgaccgacaacatcccagcctttagctcagccgcat
ttatctgcatgactgagcaggagtcgtgtgtgaacagtgaagctcatggt
acatgtgaacacagcctgtaaggtaaagcgaagctcacggtacatgtgaa
cacagcctgtaagggaaagcggggactcagaatctgcctgcatgtttaaa
ctcaggaaactcacctcttttattaaagatgccaggtgaagagccgtgag
aggagtttgctctgctggcttgacaaccacggtattcccacagctaaggg
cagggcctatcttccaaatgaacatgagcattggaaaattccactagaaa
gcaaaattgaaaaaacggaccctttacgttgtctcaaatcacagtttcta
gaacaacctgccttgatagctgttgaataaaatcttgtaagttctgagta
cttatctgaatcatctcacttagagtcactgttaaaagcaactaatacat
gataaatgatctggactcaccatatagaagggaacaggaaaacactccta
catttagttgcgtgctgatattttgaatgcttattctacaaggaagaata
ctttatagttttgtatataaataagcatagtagatgttaaaacgatctga
cattatctcccctctattttcctggagtccctttattgaatttacctaat
tataataccttttagtatatttaatgccaggagacttgatttttactttt
tggattctagagactgaaaccaggccatggatatgttgaaattgtttgca
caatggaggggtaggttcagatcaggacaaacgatattgttacaggcaaa
ggactttcacatccagagggtgagtactttggagttcaggatccttataa
acctctgggccagctgtagacgtgaagaatatggtggaccacttctctgc
tatgcatccccccgcatgagttcttgaaaacaatcgtgctacatgaatgg
atatctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20499491_20500065
seq2: B6Ng01-264F03.b_45_619

seq1  GAATTCAGTAAAAATAAAGGGACCTCTCCAGTCAGATATGGGTTTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAATAAAGGGACCTCTCCAGTCAGATATGGGTTTTCTAG  50

seq1  AAATAATCTTGTACTGAAATGGGCTAAGGAGGAACCAAATCTAAGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTTGTACTGAAATGGGCTAAGGAGGAACCAAATCTAAGTTTGC  100

seq1  ATGGAAAGTTTAAATTTTCTAGAAAACCTATAGCTAATAACACATGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTTTAAATTTTCTAGAAAACCTATAGCTAATAACACATGCTTT  150

seq1  TCTATGACAATAGGAAAACACAAAATAAGATCTATAATAACAGATTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACAATAGGAAAACACAAAATAAGATCTATAATAACAGATTATAG  200

seq1  ATGATTCTTCCTATTATTACCTCTATTACTATTATTATTATTATGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTCCTATTATTACCTCTATTACTATTATTATTATTATGTTATT  250

seq1  TGTTATTAGATCTCTTCTTTTGACTGACACATCTCACCACACTCGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAGATCTCTTCTTTTGACTGACACATCTCACCACACTCGTTTCA  300

seq1  ATACTGCCCTTCTTGTTTAAAAGTGTTTTAAAGACATTATTTAATGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCCCTTCTTGTTTAAAAGTGTTTTAAAGACATTATTTAATGTATC  350

seq1  TGTTCCAAGGGCAGGAAATCTGTTCTAGCATCTTTATTGCCTATGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGGGCAGGAAATCTGTTCTAGCATCTTTATTGCCTATGTTCCC  400

seq1  TTTCAATATTAAAGTGGGCTTCAAAGTTCATGCTAGCCCCAGTTCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTAAAGTGGGCTTCAAAGTTCATGCTAGCCCCAGTTCTCCCT  450

seq1  CCCCCTCCCACTCTCCCTCTCCCCTTCCATCTCTCCCTCTCCCCCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCACTCTCCCTCTCCCCTTCCATCTCTCCCTCTCCCCCTCTCC  500

seq1  CGCTCCCCCTCCATCTCTCCCTCTCCCCCTCCCCTTCTCTCTCTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCCCTCCATCTCTCCCTCTCCCCCTCCCCTTCTCTCTCTCTCTCT  550

seq1  CTCTCTCTCTCTCTCTCTCTCTCTC  575
      |||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTC  575


seq1: chr19_20697151_20698257
seq2: B6Ng01-264F03.g_66_1173 (reverse)

seq1  GCAGATATCCATTTAATGTAGCAAGGATTGTTTTC-AGGACTCATGCGGG  49
      ||||||||||| || ||||||| | |||||||||| || |||||||||||
seq2  GCAGATATCCA-TTCATGTAGC-ACGATTGTTTTCAAGAACTCATGCGGG  48

seq1  GTGAATGCATAAGCAGAGAAGTGGTC--ACATAT--CTCACGTCTTACAG  95
      | | |||||| |||||||||||||||   |||||   ||||||| |||||
seq2  G-GGATGCAT-AGCAGAGAAGTGGTCCACCATATTCTTCACGTC-TACAG  95

seq1  CTGG-CCAGAGGGTTTATAAGGAT-CTGAACT-CAAAGTACTCACCCTCT  142
      |||| ||||| ||||||||||||| ||||||| |||||||||||||||||
seq2  CTGGCCCAGA-GGTTTATAAGGATCCTGAACTCCAAAGTACTCACCCTCT  144

seq1  GGATGTGAAAGTCCTTTGCCTGTAACAATATCGTTTGTCCTGATCTGAAC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGAAAGTCCTTTGCCTGTAACAATATCGTTTGTCCTGATCTGAAC  194

seq1  CTACCCCTCCATTGTGCAAAACAATTTCAACATATCCATGGCCTGGTTTC  242
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTACCCCTCCATTGTGC-AAACAATTTCAACATATCCATGGCCTGGTTTC  243

seq1  AGTCTCTAGAATCCAAAAAGTAAAAATCAAGTCTCCTGGCATTAAATATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAGAATCCAAAAAGTAAAAATCAAGTCTCCTGGCATTAAATATA  293

seq1  CTAAAAGGTATTATAATTAGGTAAATTCAATAAAGGGACTCCAGGAAAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGTATTATAATTAGGTAAATTCAATAAAGGGACTCCAGGAAAAT  343

seq1  AGAGGGGAGATAATGTCAGATCGTTTTAACATCTACTATGCTTATTTATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAGATAATGTCAGATCGTTTTAACATCTACTATGCTTATTTATA  393

seq1  TACAAAACTATAAAGTATTCTTCCTTGTAGAATAAGCATTCAAAATATCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACTATAAAGTATTCTTCCTTGTAGAATAAGCATTCAAAATATCA  443

seq1  GCACGCAACTAAATGTAGGAGTGTTTTCCTGTTCCCTTCTATATGGTGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCAACTAAATGTAGGAGTGTTTTCCTGTTCCCTTCTATATGGTGAG  493

seq1  TCCAGATCATTTATCATGTATTAGTTGCTTTTAACAGTGACTCTAAGTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCATTTATCATGTATTAGTTGCTTTTAACAGTGACTCTAAGTGA  543

seq1  GATGATTCAGATAAGTACTCAGAACTTACAAGATTTTATTCAACAGCTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCAGATAAGTACTCAGAACTTACAAGATTTTATTCAACAGCTAT  593

seq1  CAAGGCAGGTTGTTCTAGAAACTGTGATTTGAGACAACGTAAAGGGTCCG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGTTGTTCTAGAAACTGTGATTTGAGACAACGTAAAGGGTCCG  643

seq1  TTTTTTCAATTTTGCTTTCTAGTGGAATTTTCCAATGCTCATGTTCATTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAATTTTGCTTTCTAGTGGAATTTTCCAATGCTCATGTTCATTT  693

seq1  GGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCA  743

seq1  GCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGA  793

seq1  GGTGAGTTTCCTGAGTTTAAACATGCAGGCAGATTCTGAGTCCCCGCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTCCTGAGTTTAAACATGCAGGCAGATTCTGAGTCCCCGCTTT  843

seq1  CCCTTACAGGCTGTGTTCACATGTACCGTGAGCTTCGCTTTACCTTACAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACAGGCTGTGTTCACATGTACCGTGAGCTTCGCTTTACCTTACAG  893

seq1  GCTGTGTTCACATGTACCATGAGCTTCACTGTTCACACACGACTCCTGCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCACATGTACCATGAGCTTCACTGTTCACACACGACTCCTGCT  943

seq1  CAGTCATGCAGATAAATGCGGCTGAGCTAAAGGCTGGGATGTTGTCGGTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGCAGATAAATGCGGCTGAGCTAAAGGCTGGGATGTTGTCGGTC  993

seq1  AGCACGAATGTATCTCCACCTAAATAACGACAGGAAGCCAGACTCAGAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAATGTATCTCCACCTAAATAACGACAGGAAGCCAGACTCAGAGG  1043

seq1  CTTGTAATCAACCAATCACCCTGTAATCTGTCACTTACATTATTCAAGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATCAACCAATCACCCTGTAATCTGTCACTTACATTATTCAAGTC  1093

seq1  TCGTGAACAGAATTC  1107
      |||||||||||||||
seq2  TCGTGAACAGAATTC  1108


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