BAC Information

Click to search

BAC

Clone NameB6Ng01-264K24
Chromosome19 (Build37)
Map Location 8,968,242 - 9,104,791
singlet/doubletdoublet
Overlap geneInts5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik
Downstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264K24.bB6Ng01-264K24.g
ACCGA068526GA068527
length1,0831,068
definitionB6Ng01-264K24.b B6Ng01-264K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,968,242 - 8,969,315)(9,103,755 - 9,104,791)
sequence
gaattctctctcttttccttcattccttcccccccccccccctttttttt
ttccgagacagggtttctctgtagccctggctgacctggatctcactttg
tagaccaggctggcctcaagctcagaaatctgcctgcctctgcctcctga
gtgctgggactaaaggtgtgcgccaccacgcccggctcattcctttcttt
ttttttgagacagggtctctctatggatagacatagctgtctcggaattc
ggaattcattatgtaggttagccttgaactcagatctgtctgtgttggaa
ttgaaggtgtatgtcactggttaaggctgaattcttgaatagtatggaaa
agcacacatttgggagggagagcttttagtaaggttacagttttctgacc
attgagagatttcagggtgcttgtgctgtagagggggggctgagaagatg
ttaaagtaggtatagaatctcaatatatttagctaattcaatttttcatt
gagtaattcccatataccatcaccttaacaaaagggaattctgttttagg
agtttagaaatggttcctgcctctttgtaatatttatcctgatttcttaa
ctttaatttctttacctgtaaaatgggatcataataaccatattgttgtc
aggactgaaaaagtactggtgaagtacttaaaagtggggtggggatgtag
cttaagagatggtgcctagtaggcctaaaggcctaggttttatacctcgt
actgaaaaagaaaaaagaacgtggatatttgaaaggtaatctgttattcc
tatgattattgttgctgaaggacaaatagcatttcttgaatgaccaaggt
gtaacaggaatgggtatgcttctaacctttcataaattcttatgaggcac
gtattaccctattatcacataaaaaggaaccaggagctcatgaaaggaat
ataacttacttcacatctcccagtattttgattttcttttttttttcttc
ccttaccaggtgctcaaggagctgtcccaaggaattcaagcttttttgga
ccgggtgtagaaccttatttctgggccaccagg
gaattcacaccctaacagctcaagggaagcggctggcctgcagaaacctc
aacaatagctcagagaagaagaataaaaataagaataaaaacagccctgg
gtttgttgttcatcttctgtttatttatgtttgctctcaccctgaatttt
ggaaaatgcactgagactacccagcaaaagacagaaggaaaacaggtgtc
cctattgctgatgggaactgtatgcagtgataagacagggccattgtgac
ctacagaatttctgccaagtgctgggtgccacatgccaggtgcctggcat
tatgcctgaaataaaataataaataagaatacagcatccctccctcacag
ggttgacagtctaattccggagagagactgacaagcagtctctcactgat
aactaaatgtaagtagcattgagaccagaaaactaaagtaatgagagcat
agaatagttgggaaagagagaggattccaggcaggcttccaggaggaaat
gccccttaggctaaaacccaagggtgagaaaagagaaggctgcatcaaag
ccagagggctgctgagagtgactggcaaggccaatcatgacctcgcagaa
actgacaaccattgcagtaaacagtagagaggagcctgggggtcaagggt
tccccaggtcttgatgaggtatgggcaagctgaggtacctccacgaggct
tccctctctgcgtaaaccaacagtcaggccgtcccaccacagcattctca
tccaaattttttgttttggtttttgagacggggtatcactatgtggcgct
ggctgtcctggaactcgctgtgtagctctgattgcccgcagactctcaga
gatccacctgcctctgcttcctgattaatcagctggaatcaaaggtatgt
gccaccctaccccacaaagattgtttttaatgggtatgtgtatctgtgag
tattttgccacatgagttcagatacccaaaggaggccagaagagaaagtc
agatcccctggagcttggagtagcaaatgaatgtcagctacccaattgta
gtgctgcgaatcaaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8968242_8969315
seq2: B6Ng01-264K24.b_50_1131

seq1  GAATTCTCTCTCTTTTCCTTCATTCCTTCCCCCCCCCCCCCCTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTTTTCCTTCATTCCTTCCCCCCCCCCCCCCTTTTTTTT  50

seq1  TTCCGAGACAGGGTTTCTCTGTAGCCCTGGCTGACCTGGATCTCACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAGACAGGGTTTCTCTGTAGCCCTGGCTGACCTGGATCTCACTTTG  100

seq1  TAGACCAGGCTGGCCTCAAGCTCAGAAATCTGCCTGCCTCTGCCTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCAAGCTCAGAAATCTGCCTGCCTCTGCCTCCTGA  150

seq1  GTGCTGGGACTAAAGGTGTGCGCCACCACGCCCGGCTCATTCCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGACTAAAGGTGTGCGCCACCACGCCCGGCTCATTCCTTTCTTT  200

seq1  TTTTTTGAGACAGGGTCTCTCTATGGATAGACATAGCTGTCTCGGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTCTCTCTATGGATAGACATAGCTGTCTCGGAATTC  250

seq1  GGAATTCATTATGTAGGTTAGCCTTGAACTCAGATCTGTCTGTGTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATTATGTAGGTTAGCCTTGAACTCAGATCTGTCTGTGTTGGAA  300

seq1  TTGAAGGTGTATGTCACTGGTTAAGGCTGAATTCTTGAATAGTATGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGTGTATGTCACTGGTTAAGGCTGAATTCTTGAATAGTATGGAAA  350

seq1  AGCACACATTTGGGAGGGAGAGCTTTTAGTAAGGTTACAGTTTTCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTTGGGAGGGAGAGCTTTTAGTAAGGTTACAGTTTTCTGACC  400

seq1  ATTGAGAGATTTCAGGGTGCTTGTGCTGTAGAGGGGGGGCTGAGAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGATTTCAGGGTGCTTGTGCTGTAGAGGGGGGGCTGAGAAGATG  450

seq1  TTAAAGTAGGTATAGAATCTCAATATATTTAGCTAATTCAATTTTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAGGTATAGAATCTCAATATATTTAGCTAATTCAATTTTTCATT  500

seq1  GAGTAATTCCCATATACCATCACCTTAACAAAAGGGAATTCTGTTTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTCCCATATACCATCACCTTAACAAAAGGGAATTCTGTTTTAGG  550

seq1  AGTTTAGAAATGGTTCCTGCCTCTTTGTAATATTTATCCTGATTTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAATGGTTCCTGCCTCTTTGTAATATTTATCCTGATTTCTTAA  600

seq1  CTTTAATTTCTTTACCTGTAAAATGGGATCATAATAACCATATTGTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTCTTTACCTGTAAAATGGGATCATAATAACCATATTGTTGTC  650

seq1  AGGACTGAAAAAGTACTGGTGAAGTACTTAAAAGTGGGGTGGGGATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAAAAAGTACTGGTGAAGTACTTAAAAGTGGGGTGGGGATGTAG  700

seq1  CTTAAGAGATGGTGCCTAGTAGGCCTAAAGGCCTAGGTTTTATACCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGATGGTGCCTAGTAGGCCTAAAGGCCTAGGTTTTATACCTCGT  750

seq1  ACTGAAAAAGAAAAAAGAACGTGGATATTTGAAAGGTAATCTGTTATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAGAAAAAAGAACGTGGATATTTGAAAGGTAATCTGTTATTCC  800

seq1  TATGATTATTGTTGCTGAAGGACAAATAGCATTTCTTGAATGACCAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTATTGTTGCTGAAGGACAAATAGCATTTCTTGAATGACCAAGGT  850

seq1  GTAACAGGAATGGGTATGCTTCTAAACCTTCATAAATTCTTATGAGGCAC  900
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  GTAACAGGAATGGGTATGCTTCTAACCTTTCATAAATTCTTATGAGGCAC  900

seq1  GTATTACCCTATTATCACATAAAAAGAAACCA-GAGCTCATGAAAGGAAT  949
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GTATTACCCTATTATCACATAAAAAGGAACCAGGAGCTCATGAAAGGAAT  950

seq1  ATAACTTACTTCACATCTCCCAGTATTTTGATTTTCTTTTTTTTTTTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||  | 
seq2  ATAACTTACTTCACATCTCCCAGTATTTTGATTTTCTTTTTTTTTTCTTC  1000

seq1  CCTTAC--AGTGCTC-AGGAGCTGTCCCAA-GAAATCAAGGCTTTTTTGA  1045
      ||||||   |||||| |||||||||||||| ||| |||||  ||||| ||
seq2  CCTTACCAGGTGCTCAAGGAGCTGTCCCAAGGAATTCAAGCTTTTTTGGA  1050

seq1  CC-GGTGTAGACCCT--ATTCTGGGCCACCAG  1074
      || |||||||| |||   ||||||||||||||
seq2  CCGGGTGTAGAACCTTATTTCTGGGCCACCAG  1082

seq1: chr19_9103755_9104791
seq2: B6Ng01-264K24.g_95_1133 (reverse)

seq1  AAGTTTGATTCGCAGCACCTAC-ATTGGGTAGCTGACATTCATTTGCTAC  49
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AAGTTTGATTCGCAGCA-CTACAATTGGGTAGCTGACATTCATTTGCTAC  49

seq1  TCC-AGCTCCAGGGGATCTGACTTTCTCTTCTGGCCTCC-TTGGGTATCT  97
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCAAGCTCCAGGGGATCTGACTTTCTCTTCTGGCCTCCTTTGGGTATCT  99

seq1  GAACTCATGTGGC-ATATACTCACAGATACACATACCCATTTAAAAACAA  146
      ||||||||||||| | ||||||||||||||||||||||| ||||||||||
seq2  GAACTCATGTGGCAAAATACTCACAGATACACATACCCA-TTAAAAACAA  148

seq1  TCTTTGTGGGGTAGGGTGGCACATACCTTTGATTCCAGCTGATTAATCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGGGTAGGGTGGCACATACCTTTGATTCCAGCTGATTAATCAG  198

seq1  GAAGCAGAGGCAGGTGGATCTCTGAGAGTCTGCGGGCAATCAGAGCTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCAGGTGGATCTCTGAGAGTCTGCGGGCAATCAGAGCTACA  248

seq1  CAGCGAGTTCCAGGACAGCCAGCGCCACATAGTGATACCCCGTCTCAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGTTCCAGGACAGCCAGCGCCACATAGTGATACCCCGTCTCAAAA  298

seq1  ACCAAAACAAAAAATTTGGATGAGAATGCTGTGGTGGGACGGCCTGACTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACAAAAAATTTGGATGAGAATGCTGTGGTGGGACGGCCTGACTG  348

seq1  TTGGTTTACGCAGAGAGGGAAGCCTCGTGGAGGTACCTCAGCTTGCCCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTACGCAGAGAGGGAAGCCTCGTGGAGGTACCTCAGCTTGCCCAT  398

seq1  ACCTCATCAAGACCTGGGGAACCCTTGACCCCCAGGCTCCTCTCTACTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCAAGACCTGGGGAACCCTTGACCCCCAGGCTCCTCTCTACTGT  448

seq1  TTACTGCAATGGTTGTCAGTTTCTGCGAGGTCATGATTGGCCTTGCCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCAATGGTTGTCAGTTTCTGCGAGGTCATGATTGGCCTTGCCAGT  498

seq1  CACTCTCAGCAGCCCTCTGGCTTTGATGCAGCCTTCTCTTTTCTCACCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCAGCAGCCCTCTGGCTTTGATGCAGCCTTCTCTTTTCTCACCCT  548

seq1  TGGGTTTTAGCCTAAGGGGCATTTCCTCCTGGAAGCCTGCCTGGAATCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTAGCCTAAGGGGCATTTCCTCCTGGAAGCCTGCCTGGAATCCT  598

seq1  CTCTCTTTCCCAACTATTCTATGCTCTCATTACTTTAGTTTTCTGGTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCCCAACTATTCTATGCTCTCATTACTTTAGTTTTCTGGTCTC  648

seq1  AATGCTACTTACATTTAGTTATCAGTGAGAGACTGCTTGTCAGTCTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACTTACATTTAGTTATCAGTGAGAGACTGCTTGTCAGTCTCTCT  698

seq1  CCGGAATTAGACTGTCAACCCTGTGAGGGAGGGATGCTGTATTCTTATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAATTAGACTGTCAACCCTGTGAGGGAGGGATGCTGTATTCTTATTT  748

seq1  ATTATTTTATTTCAGGCATAATGCCAGGCACCTGGCATGTGGCACCCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATTTCAGGCATAATGCCAGGCACCTGGCATGTGGCACCCAGC  798

seq1  ACTTGGCAGAAATTCTGTAGGTCACAATGGCCCTGTCTTATCACTGCATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAGAAATTCTGTAGGTCACAATGGCCCTGTCTTATCACTGCATA  848

seq1  CAGTTCCCATCAGCAATAGGGACACCTGTTTTCCTTCTGTCTTTTGCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCATCAGCAATAGGGACACCTGTTTTCCTTCTGTCTTTTGCTGG  898

seq1  GTAGTCTCAGTGCATTTTCCAAAATTCAGGGTGAGAGCAAACATAAATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCAGTGCATTTTCCAAAATTCAGGGTGAGAGCAAACATAAATAA  948

seq1  ACAGAAGATGAACAACAAACCCAGGGCTGTTTTTATTCTTATTTTTATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATGAACAACAAACCCAGGGCTGTTTTTATTCTTATTTTTATTC  998

seq1  TTCTTCTCTGAGCTATTGTTGAGGTTTCTGCAGGCCAGCCG  1037
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGAGCTATTGTTGAGGTTTCTGCAGGCCAGCCG  1039