BAC Information

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BAC

Clone NameB6Ng01-265F09
Chromosome19 (Build37)
Map Location 11,960,282 - 12,069,481
singlet/doubletdoublet
Overlap geneEG666985, Olfr1420, AV312086, Osbp
Upstream genePrpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845
Downstream geneGA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265F09.bB6Ng01-265F09.g
ACCGA069014GA069015
length1,1671,130
definitionB6Ng01-265F09.b B6Ng01-265F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,960,282 - 11,961,467)(12,068,340 - 12,069,481)
sequence
gaattccctgtcctcctatttcatttcccattgtggacaatctgggttac
ttaatttctgtcaaaaaaaaaatggtgtaaatgaatagccacgttggatt
agagtacatcaacaattctcaacgttctctgcaccataggaattttacag
tgttctctctgaacagcatagtaattgtgatagagttaatagtctgctat
ttcttgtgataagcattgtccatgcatcatctcagtctattcccacaact
atcccatgaggggaggggaatagtattgctcccaatttgcagattaggaa
aatgaggactcaaaaaagtaagttactcaaaagcatataactgatgggaa
actgagccaaatttttaattaaaaaatgtgtgtgtgtgtgtgtgtgtgtg
tgtgttgcccagaagttgacatcaggtgccttcctctatcactgtctgcc
ttattttttgagacaagttctccctctaaacctgaaggtttccagtttat
ctacactgattagccagcaagcaacagagattctcctgcctccaccttca
gcacgggaattacaagtgttttatctcacttttttcacatgggtgctggg
atctaaatgctttattttccagctgagccatctccccagtattgggtctg
cctgatcttttaaccattcttgtgcattgcttcaaacccccattttttaa
tttgattctacccaattttaacccttaaaaacaatgagcaaatgattttt
caggtaatttgctttgcccccaactgacctcatcactgaaaacatgaaga
agtgactaaaatacagtccctaaggaaaatgtaccagtggaatagccctg
atgcaatttaactcttgggtacagtgttctcatcttgctgatttcggttt
cccaagctgacctcagtcatctcaggggaccaacaacggttttgttagcc
aagatagttatgaatgttgttttaaatatttcaagtctcatactattgtg
acttcagggtaagttccaagctaccagatgttgcaagcaaagccacttgt
caccttgaacaagaaagggtagaatggagtaagactagagagctatggat
agtagtatgtctggcttaaatgccttatactcagcctgtcattgaaactg
ggtgatctgggaatggc
gaattcaaacagaatggtaaatgccaaactcactcctatttgcctaagac
agcatggtgaaccatctgtggtgaaagcctgtatttccctaagttttgga
ctttgaaggtctctgaatgtattgatttgaaattttgctgagtcataatg
gtgaatcatgttggatcctgaccctcaggatccacattccaggtcatgtc
atgttattagatcagagagggatcattaaacattgttgctgtttgactga
ccctaatgttggaattaaactgatggtgcttgaggtctaacaggactgtc
aggaatgcctcaaacctactgctctgcttttcaccttgccagcaaacaaa
ataacaaaactttacaaaatttaacttccaatcttgtagtaataatcggg
tggtttccccaaacctggtacaaaaacaatctctgataacagcttatttt
gttgacttgagatctgaaaactccagtctttggggcagagctttaaaaga
aaggaagggcactagccatccaggcctgtgaagacagtcaagcactttag
cagcaggatgtgacacacagcctggaacaatggtgaagaactggactata
ggagcttgagtgatggcttagccattaagagcacttgctgctctgcaaga
gaccctcagtttggttcccagacccacatgttgactcacctttccacaca
gtcatctggctgctgtggccaccaggcatgcacacagtacacatacacac
tactctcaggccaaacactcatatacataaaataaagttcccacacagag
caaatcatcactggccaggtctccctctgtccaccactatttcctgacta
ttaggagtagaagcaaatcagacaatatagctttttaaaaattatttaat
ttagtagtttttttttttgaaaaaaagcaataaggcaaaaaaactgaaaa
tatatatatagtcttatttttgctttcatgtgactttattccatcttcag
gacttctaagcttcttcattagcaggatctgggcatcaagcctagaatgt
aatgcagaatagagggaaagggaagccacgagtcatggtattcaattcta
atcagctcgagaacggcgctcattttatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11960282_11961467
seq2: B6Ng01-265F09.b_48_1214

seq1  GAATTCCCTGTCCTCCTATTTCATTTCCCATTGTGGACAATCTGGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCCTCCTATTTCATTTCCCATTGTGGACAATCTGGGTTAC  50

seq1  TTAATTTCTGTCAAAAAAAAAATGGTGTAAATGAATAGCCACGTTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTGTCAAAAAAAAAATGGTGTAAATGAATAGCCACGTTGGATT  100

seq1  AGAGTACATCAACAATTCTCAACGTTCTCTGCACCATAGGAATTTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACATCAACAATTCTCAACGTTCTCTGCACCATAGGAATTTTACAG  150

seq1  TGTTCTCTCTGAACAGCATAGTAATTGTGATAGAGTTAATAGTCTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCTGAACAGCATAGTAATTGTGATAGAGTTAATAGTCTGCTAT  200

seq1  TTCTTGTGATAAGCATTGTCCATGCATCATCTCAGTCTATTCCCACAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGATAAGCATTGTCCATGCATCATCTCAGTCTATTCCCACAACT  250

seq1  ATCCCATGAGGGGAGGGGAATAGTATTGCTCCCAATTTGCAGATTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGAGGGGAGGGGAATAGTATTGCTCCCAATTTGCAGATTAGGAA  300

seq1  AATGAGGACTCAAAAAAGTAAGTTACTCAAAAGCATATAACTGATGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGACTCAAAAAAGTAAGTTACTCAAAAGCATATAACTGATGGGAA  350

seq1  ACTGAGCCAAATTTTTAATTAAAAAATGTGTGTGTGTGTGTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCAAATTTTTAATTAAAAAATGTGTGTGTGTGTGTGTGTGTGTG  400

seq1  TGTGTTGCCCAGAAGTTGACATCAGGTGCCTTCCTCTATCACTGTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCCCAGAAGTTGACATCAGGTGCCTTCCTCTATCACTGTCTGCC  450

seq1  TTATTTTTTGAGACAAGTTCTCCCTCTAAACCTGAAGGTTTCCAGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTGAGACAAGTTCTCCCTCTAAACCTGAAGGTTTCCAGTTTAT  500

seq1  CTACACTGATTAGCCAGCAAGCAACAGAGATTCTCCTGCCTCCACCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGATTAGCCAGCAAGCAACAGAGATTCTCCTGCCTCCACCTTCA  550

seq1  GCACGGGAATTACAAGTGTTTTATCTCACTTTTTTCACATGGGTGCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGAATTACAAGTGTTTTATCTCACTTTTTTCACATGGGTGCTGGG  600

seq1  ATCTAAATGCTTTATTTTCCAGCTGAGCCATCTCCCCAGTATTGGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATGCTTTATTTTCCAGCTGAGCCATCTCCCCAGTATTGGGTCTG  650

seq1  CCTGATCTTTTAACCATTCTTGTGCATTGCTTCAAACCCCCATTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTTTTAACCATTCTTGTGCATTGCTTCAAACCCCCATTTTTTAA  700

seq1  TTTGATTCTACCCAATTTTAACCCTTAAAAACAATGAGCAAATGATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTACCCAATTTTAACCCTTAAAAACAATGAGCAAATGATTTTT  750

seq1  CAGGTAATTTGCTTTGCCCCCAACTGACCTCATCACTGAAAACATGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATTTGCTTTGCCCCCAACTGACCTCATCACTGAAAACATGAAGA  800

seq1  AGTGACTAAAATACAGTCCCTAAGGAAAATGTACCAGTGGAATAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAAAATACAGTCCCTAAGGAAAATGTACCAGTGGAATAGCCCTG  850

seq1  ATGCAATTTAACTCTTGGGTACAGTGTTTCTCATCTTGCTGATTTCGGTT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGCAATTTAACTCTTGGGTACAGTG-TTCTCATCTTGCTGATTTCGGTT  899

seq1  TCCCAAGCTGACCTCAGTCATCTCAGGGGACCAACAACGG-TTTGTTAGC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCCAAGCTGACCTCAGTCATCTCAGGGGACCAACAACGGTTTTGTTAGC  949

seq1  CAAGATAGTTATGAATGTTGTTTTAAAATAATTTCAAGTCTCAATACTAT  999
      |||||||||||||||||||||||||||   |||||||||||| |||||||
seq2  CAAGATAGTTATGAATGTTGTTTTAAA--TATTTCAAGTCTC-ATACTAT  996

seq1  TGTGACTTCAAGGGTAAGTTCCAAGCTACCAAGATGTTGCAAGCAAAAGC  1049
      ||||||||| |||||||||||||||||||| ||||||||||||| |||||
seq2  TGTGACTTC-AGGGTAAGTTCCAAGCTACC-AGATGTTGCAAGC-AAAGC  1043

seq1  CACTTGTCACCTTGAACAAAGAAAAGGGTAGAATGGAGTAAAGACTTAGA  1099
      |||||||||||||||||||   ||||||||||||||||| ||||| ||| 
seq2  CACTTGTCACCTTGAACAA--GAAAGGGTAGAATGGAGT-AAGAC-TAG-  1088

seq1  AGAGCTAATGGAATAGTAGTTATGTCTGGTTTTAAAATGCTTTATCATCA  1149
      |||||| |||| ||||||| ||||||||| ||  |||||| ||||  |||
seq2  AGAGCT-ATGG-ATAGTAG-TATGTCTGGCTT--AAATGCCTTATACTCA  1133

seq1  AGCTGTCAATTAGAAACATGTGTGATCTGGGAGTGGC  1186
        ||||||  | ||||| || ||||||||||| ||||
seq2  GCCTGTCA--TTGAAAC-TGGGTGATCTGGGAATGGC  1167

seq1: chr19_12068340_12069481
seq2: B6Ng01-265F09.g_66_1195 (reverse)

seq1  CCATAAAATGGGCGCCG-TCTCGGAGGCTTTGGATAGAATGGAAATTTCC  49
      |||||||||| |||||| |||| |||    ||  |||||| |||   | |
seq2  CCATAAAATGAGCGCCGTTCTC-GAG---CTGATTAGAATTGAA---TAC  43

seq1  CAAGGAACCTCTGTGCTTTCCCCTTTCCCTCTA-TCTGCACTACATTTCT  98
      || |    |||   ||||  ||||||||||||| |||||| |||| ||||
seq2  CATG---ACTCGTGGCTT--CCCTTTCCCTCTATTCTGCATTACA-TTCT  87

seq1  A-GCTTGATTCCCAGATCCCTGCTAATGGAAGAAGCTTAGAAGTCCTGAA  147
      | ||||||| ||||||| ||||||||| ||||||||||||||||||||||
seq2  AGGCTTGATGCCCAGAT-CCTGCTAAT-GAAGAAGCTTAGAAGTCCTGAA  135

seq1  GATGGAATAAAGTCACATGAAAGC-AAAATAAGACTATATATATATTTTC  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGGAATAAAGTCACATGAAAGCAAAAATAAGACTATATATATATTTTC  185

seq1  AGTTTTTTTGCCTTATTGCTTTTTTTCAAAAAAAAAAAACTACTAAATTA  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTTTTTTTGCCTTATTGCTTTTTTTC-AAAAAAAAAAACTACTAAATTA  234

seq1  AATAATTTTTAAAAAGCTATATTGTCTGATTTGCTTCTACTCCTAATAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAAAAAGCTATATTGTCTGATTTGCTTCTACTCCTAATAGT  284

seq1  CAGGAAATAGTGGTGGACAGAGGGAGACCTGGCCAGTGATGATTTGCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATAGTGGTGGACAGAGGGAGACCTGGCCAGTGATGATTTGCTCT  334

seq1  GTGTGGGAACTTTATTTTATGTATATGAGTGTTTGGCCTGAGAGTAGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAACTTTATTTTATGTATATGAGTGTTTGGCCTGAGAGTAGTGT  384

seq1  GTATGTGTACTGTGTGCATGCCTGGTGGCCACAGCAGCCAGATGACTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTACTGTGTGCATGCCTGGTGGCCACAGCAGCCAGATGACTGTG  434

seq1  TGGAAAGGTGAGTCAACATGTGGGTCTGGGAACCAAACTGAGGGTCTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGTGAGTCAACATGTGGGTCTGGGAACCAAACTGAGGGTCTCTT  484

seq1  GCAGAGCAGCAAGTGCTCTTAATGGCTAAGCCATCACTCAAGCTCCTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGCAAGTGCTCTTAATGGCTAAGCCATCACTCAAGCTCCTATA  534

seq1  GTCCAGTTCTTCACCATTGTTCCAGGCTGTGTGTCACATCCTGCTGCTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTTCTTCACCATTGTTCCAGGCTGTGTGTCACATCCTGCTGCTAA  584

seq1  AGTGCTTGACTGTCTTCACAGGCCTGGATGGCTAGTGCCCTTCCTTTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGACTGTCTTCACAGGCCTGGATGGCTAGTGCCCTTCCTTTCTT  634

seq1  TTAAAGCTCTGCCCCAAAGACTGGAGTTTTCAGATCTCAAGTCAACAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTCTGCCCCAAAGACTGGAGTTTTCAGATCTCAAGTCAACAAAA  684

seq1  TAAGCTGTTATCAGAGATTGTTTTTGTACCAGGTTTGGGGAAACCACCCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTTATCAGAGATTGTTTTTGTACCAGGTTTGGGGAAACCACCCG  734

seq1  ATTATTACTACAAGATTGGAAGTTAAATTTTGTAAAGTTTTGTTATTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTACAAGATTGGAAGTTAAATTTTGTAAAGTTTTGTTATTTTG  784

seq1  TTTGCTGGCAAGGTGAAAAGCAGAGCAGTAGGTTTGAGGCATTCCTGACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGCAAGGTGAAAAGCAGAGCAGTAGGTTTGAGGCATTCCTGACA  834

seq1  GTCCTGTTAGACCTCAAGCACCATCAGTTTAATTCCAACATTAGGGTCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTAGACCTCAAGCACCATCAGTTTAATTCCAACATTAGGGTCAG  884

seq1  TCAAACAGCAACAATGTTTAATGATCCCTCTCTGATCTAATAACATGACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCAACAATGTTTAATGATCCCTCTCTGATCTAATAACATGACA  934

seq1  TGACCTGGAATGTGGATCCTGAGGGTCAGGATCCAACATGATTCACCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGAATGTGGATCCTGAGGGTCAGGATCCAACATGATTCACCATT  984

seq1  ATGACTCAGCAAAATTTCAAATCAATACATTCAGAGACCTTCAAAGTCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGCAAAATTTCAAATCAATACATTCAGAGACCTTCAAAGTCCA  1034

seq1  AAACTTAGGGAAATACAGGCTTTCACCACAGATGGTTCACCATGCTGTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGGAAATACAGGCTTTCACCACAGATGGTTCACCATGCTGTCT  1084

seq1  TAGGCAAATAGGAGTGAGTTTGGCATTTACCATTCTGTTTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAATAGGAGTGAGTTTGGCATTTACCATTCTGTTTGAATTC  1130