BAC Information

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BAC

Clone NameB6Ng01-266C24
Chromosome19 (Build37)
Map Location 15,979,168 - 15,980,282
singlet/doubletsinglet
Overlap genePsat1
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneLOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266C24.bB6Ng01-266C24.g
ACCGA069646GA069647
length1,2321,113
definitionB6Ng01-266C24.b B6Ng01-266C24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctccgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttccatatattgaacc
atccctgcatccctggaatgaaacctacttggtcaggatgaatgattgtt
ttgatgtgttcttggattcggttagcgagaactttattgaatatttttgc
atcgaaattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtactttctgtttctattttgtggaatagtttgtgaagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttttttttggttggagactattaatgactgcttctacttct
ttaggggatataggactgtttagatcattaacctgatcttgatttaactt
tggtacctggtatctgtctagaaacttgtccatttcatccaggttctcca
gttttgttgattatagccttttgtaggaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatgctttccctgtgccctccagtgagtcttaatttctttctttatt
ccttccttgaccaaggtatcattgagaagagtgttgttcattttccacat
gaatgttggctttctattatttatgttgttattgaagatcagccttagtc
catggtgatctgaaaggatgcatgggacaatttcaatatttttgtacatg
ttgaggcttgttttgtgaccaattatgtgatcaattttgggagaaggtac
catgaggtgctgagagaaggtatatcctttttgttttaggataaatgtcc
tgtagaatatctgttagatccatttgttccataccttctgttagtttcca
ctatgtcccctgttttagtttctgttccatgatcctgtccatgaatgaaa
gtggtgtgtggaagtctcccccatatattattggttgaagggccaatgtg
gtgccttgagagccttaccaagttctatgaatggtgcgcgtcgcccctgg
tattgggaacgcatatggactacttcacagat
gaattcagcctgtcagccatctttgctgcccccttctctaggtggactgc
cttgggctttgccctgctggttccaactggttattattaggaggttggag
gccctgtgggctggattgacagcagtgagtttgctgggttctgcagcagt
tggttcaagtcaacagcgactcacgagcgttttggatctgtgtactgcaa
ttcccataaagagataggtgtgttatgctgtgtttatgtagtgggtattg
ttttaaacaccgtacggtttatgcctatgcctttatatttctaatgaaac
agttttgttcagcccatgactttgtgcatgactgtcgtccgttctagtca
cctgtgctctccatctactgccttttaaagctgcgtcatgagaaggatct
acacgttccaccatgactctcgtttcttgccacaagtagaagaaatggtt
gattctttgcttttcggttaggccgttaaacaaaactcagtcacacccct
gccttccaccctcaaactgtgatcacgtggctgttcttgtagtttaacca
gggcaacactatatattccaggtctatacattgctgaggtctttttctgg
ttgttcatgtatcagtgttttcaatcgactgcatggaaaacattaaagtc
ctaagtcatctaagccattcattgcctgtgaattattctgcttgcttttt
tagtcaggtgctgcttttaaacattctgatggggagcctagggtttaaaa
ttagcctgtgatagggtagtgtagtctagacaaaggtgtcaggcttcgtt
cttgtgcaactcagtgtggttgcttgccttttactttggaacaaacactg
tcagcagagtcccttccagcacagctcccagggaagagttttgtgaactc
tgtcccagttagcccagaaaaaaaaggcagcagacagctttgcgctcatc
ctgttgcattcgattgcaacaaggggaagacactgattgcttggtttctc
cggtcaggttccaccagctcatgggtgaagagttgaaataagaccaacat
tgcaggatgtttggcattaaacaaagctcttactttgttattgcccagta
cagggacaccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15979168_15980282
seq2: B6Ng01-266C24.g_65_1177 (reverse)

seq1  CCTGGTGTTCCCCTGTACTGGGGCAT-ACAAAGTAAGAGCTTGTTTTAAA  49
      ||||||||  ||||||||||||  || |||||||||||||||  ||||| 
seq2  CCTGGTGT--CCCTGTACTGGGCAATAACAAAGTAAGAGCTTTGTTTAAT  48

seq1  TGCAAACATCCTGCAATGTTGGGTCTTATTTCAACTCTTCACCAATGAGC  99
        |||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  GCCAAACATCCTGCAATGTT-GGTCTTATTTCAACTCTTCACCCATGAGC  97

seq1  TGGTGGAACCTGACCGGAGAAACCAAGCAATCAGTGTCTTCCCCTTG-TG  148
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGTGGAACCTGACCGGAGAAACCAAGCAATCAGTGTCTTCCCCTTGTTG  147

seq1  CAATCGAATGCAACAGGATGAGCGCAAAGCTGTTCTGCTGCCTTTTTTTT  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAATCGAATGCAACAGGATGAGCGCAAAGCTG-TCTGCTGCCTTTTTTTT  196

seq1  CTGGGCTAACTGGGACAGAGTTCACAAAACTCTTCCCTGGGAGCTGTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAACTGGGACAGAGTTCACAAAACTCTTCCCTGGGAGCTGTGCT  246

seq1  GGAAGGGACTCTGCTGACAGTGTTTGTTCCAAAGTAAAAGGCAAGCAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGACTCTGCTGACAGTGTTTGTTCCAAAGTAAAAGGCAAGCAACC  296

seq1  ACACTGAGTTGCACAAGAACGAAGCCTGACACCTTTGTCTAGACTACACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTTGCACAAGAACGAAGCCTGACACCTTTGTCTAGACTACACT  346

seq1  ACCCTATCACAGGCTAATTTTAAACCCTAGGCTCCCCATCAGAATGTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCACAGGCTAATTTTAAACCCTAGGCTCCCCATCAGAATGTTTA  396

seq1  AAAGCAGCACCTGACTAAAAAAGCAAGCAGAATAATTCACAGGCAATGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCACCTGACTAAAAAAGCAAGCAGAATAATTCACAGGCAATGAA  446

seq1  TGGCTTAGATGACTTAGGACTTTAATGTTTTCCATGCAGTCGATTGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGATGACTTAGGACTTTAATGTTTTCCATGCAGTCGATTGAAAA  496

seq1  CACTGATACATGAACAACCAGAAAAAGACCTCAGCAATGTATAGACCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATACATGAACAACCAGAAAAAGACCTCAGCAATGTATAGACCTGG  546

seq1  AATATATAGTGTTGCCCTGGTTAAACTACAAGAACAGCCACGTGATCACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGTGTTGCCCTGGTTAAACTACAAGAACAGCCACGTGATCACA  596

seq1  GTTTGAGGGTGGAAGGCAGGGGTGTGACTGAGTTTTGTTTAACGGCCTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGGTGGAAGGCAGGGGTGTGACTGAGTTTTGTTTAACGGCCTAA  646

seq1  CCGAAAAGCAAAGAATCAACCATTTCTTCTACTTGTGGCAAGAAACGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAAGCAAAGAATCAACCATTTCTTCTACTTGTGGCAAGAAACGAGA  696

seq1  GTCATGGTGGAACGTGTAGATCCTTCTCATGACGCAGCTTTAAAAGGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGGAACGTGTAGATCCTTCTCATGACGCAGCTTTAAAAGGCAG  746

seq1  TAGATGGAGAGCACAGGTGACTAGAACGGACGACAGTCATGCACAAAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGAGAGCACAGGTGACTAGAACGGACGACAGTCATGCACAAAGTC  796

seq1  ATGGGCTGAACAAAACTGTTTCATTAGAAATATAAAGGCATAGGCATAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGAACAAAACTGTTTCATTAGAAATATAAAGGCATAGGCATAAA  846

seq1  CCGTACGGTGTTTAAAACAATACCCACTACATAAACACAGCATAACACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACGGTGTTTAAAACAATACCCACTACATAAACACAGCATAACACAC  896

seq1  CTATCTCTTTATGGGAATTGCAGTACACAGATCCAAAACGCTCGTGAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTTTATGGGAATTGCAGTACACAGATCCAAAACGCTCGTGAGTC  946

seq1  GCTGTTGACTTGAACCAACTGCTGCAGAACCCAGCAAACTCACTGCTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGACTTGAACCAACTGCTGCAGAACCCAGCAAACTCACTGCTGTC  996

seq1  AATCCAGCCCACAGGGCCTCCAACCTCCTAATAATAACCAGTTGGAACCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCCCACAGGGCCTCCAACCTCCTAATAATAACCAGTTGGAACCA  1046

seq1  GCAGGGCAAAGCCCAAGGCAGTCCACCTAGAGAAGGGGGCAGCAAAGATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAAAGCCCAAGGCAGTCCACCTAGAGAAGGGGGCAGCAAAGATG  1096

seq1  GCTGACAGGCTGAATTC  1115
      |||||||||||||||||
seq2  GCTGACAGGCTGAATTC  1113