BAC Information

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BAC

Clone NameB6Ng01-266L06
Chromosome19 (Build37)
Map Location 38,432,197 - 38,433,342
singlet/doubletsinglet
Overlap genenone
Upstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266L06.bB6Ng01-266L06.g
ACCGA070033GA070034
length1,1491,192
definitionB6Ng01-266L06.b B6Ng01-266L06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagggtagtcatgattacataacaaggccccgtctcaagaacaa
gcaaataattaaaaactagatataaaacaggaaacaataaggtgtgtgtg
tgtgtgtgtatttgtcttattagaggttcctgagcaagtgacttgtttgt
actttggaagttccgtgtcttattacctgattgaaagacaaattcctaag
aggaagttgttggggctccagagaaaaggaaaagcctgggaggttccagg
gataatagttgggagtatctcctacaggagcagagacctcaggactggtt
tgactgcaacaaacagaaagtcagtttgaattcctgtgagcgaaagagct
ttattggcctataaaactgaactgcagagaaagtagatgacgggaacact
tggcagccaatgcctggagtcaccccactcccgtctgcagctgcttctct
gcatccactccctttatgaggctagagccacatctgccacctctcccaga
ccctcatcctcctgtctgaccccagccatgacgaaacatgcttgcttagt
gccaaatgcctgtcacactttgtttgttttgatggattaaaactgagaaa
agagcacccatggaaagtcacagactcaccttatctcagagctccataaa
agtcatccgatgatcttacagacttatccaatgtatcagacatgtctggc
aatattcccaacaaatgatctttcaactagcactgaaccgcttatgcccc
attcaggcactccacggcactgtaaaaaaaaaaaaaaaaaaaaaaaaaaa
acaaacgctccacgttgtcacagagtttgttcctttacagtcagataaca
tctaccaccagttgataatgggccttcccctttgtacatctcactacatc
agaatgcttggaagaaggtcattgggccagtgagtctttgcagggctaaa
ctttcaatgtgctgtcactgtttctcaggtgggcacgggagttgaactcc
ccttggagttatcaatgggctctttcaacctccaggaggtatttaagtgg
tgcactcgtttgttctgaagcagtacctagtgtagaaaggaacagccatg
gaagaaagcagctctgcctaacggatgcaactcctgaagaacagaggga
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagca
gtgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaa
ggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacttacaaattaaagagcttgccgagtcggt
ccgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
tcgccggcatggcactaactcctgctgactggcaaacggttgtaaaagcc
gctctccctagtatgggcaaatatatggaatggagagctctttggcatga
aactgcacaagcgcaggcccgagcaaacgcagctgctttgactccagagc
agagagattggacttttgacttgttaacgggtcagggagcttattctgct
gatcagacaaactaccattggggagcttatgcccagatttcttccacggc
tattagggcctggaaggcgctctctcgagcaggtgaaaccactgggcagt
taacaaagataatccagggacctcaggaatccttctcagattttgtggcc
agaatgacagaggcagcagagcgtatttttggagagtcagagcaagctgc
gcctctgatagaacagctaatctatgagcaagccacaaaggagtgccgag
cggccatagccccaagaaagaacaaggcttacaagactggctcaggtctg
tcgagagcttgggggacctctcaccaatgcaggcttagcggccgccatcc
tccaatctcagaaccgctccatgggcagaaatatcagaggacattgtttt
tactgcgaaagctgggcattttaagaagattgcagagctcagaataacag
gaggactctctcacttctttggctctagtgtgcagggtaatccatagagc
tgacagtgtcgctctgtgagggattaaggccagtcctcccccactgaatg
tcaatcgcttatgtgtcccaaaaaccggtcatactcggggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38432197_38433342
seq2: B6Ng01-266L06.b_46_1194

seq1  GAATTCTAGGGTAGTCATGATTACATAACAAGGCCCCGTCTCAAGAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGTAGTCATGATTACATAACAAGGCCCCGTCTCAAGAACAA  50

seq1  GCAAATAATTAAAAACTAGATATAAAACAGGAAACAATAAGGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAATTAAAAACTAGATATAAAACAGGAAACAATAAGGTGTGTGTG  100

seq1  TGTGTGTGTATTTGTCTTATTAGAGGTTCCTGAGCAAGTGACTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATTTGTCTTATTAGAGGTTCCTGAGCAAGTGACTTGTTTGT  150

seq1  ACTTTGGAAGTTCCGTGTCTTATTACCTGATTGAAAGACAAATTCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAAGTTCCGTGTCTTATTACCTGATTGAAAGACAAATTCCTAAG  200

seq1  AGGAAGTTGTTGGGGCTCCAGAGAAAAGGAAAAGCCTGGGAGGTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTGTTGGGGCTCCAGAGAAAAGGAAAAGCCTGGGAGGTTCCAGG  250

seq1  GATAATAGTTGGGAGTATCTCCTACAGGAGCAGAGACCTCAGGACTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGTTGGGAGTATCTCCTACAGGAGCAGAGACCTCAGGACTGGTT  300

seq1  TGACTGCAACAAACAGAAAGTCAGTTTGAATTCCTGTGAGCGAAAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCAACAAACAGAAAGTCAGTTTGAATTCCTGTGAGCGAAAGAGCT  350

seq1  TTATTGGCCTATAAAACTGAACTGCAGAGAAAGTAGATGACGGGAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCCTATAAAACTGAACTGCAGAGAAAGTAGATGACGGGAACACT  400

seq1  TGGCAGCCAATGCCTGGAGTCACCCCACTCCCGTCTGCAGCTGCTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCAATGCCTGGAGTCACCCCACTCCCGTCTGCAGCTGCTTCTCT  450

seq1  GCATCCACTCCCTTTATGAGGCTAGAGCCACATCTGCCACCTCTCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACTCCCTTTATGAGGCTAGAGCCACATCTGCCACCTCTCCCAGA  500

seq1  CCCTCATCCTCCTGTCTGACCCCAGCCATGACGAAACATGCTTGCTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCCTCCTGTCTGACCCCAGCCATGACGAAACATGCTTGCTTAGT  550

seq1  GCCAAATGCCTGTCACACTTTGTTTGTTTTGATGGATTAAAACTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGCCTGTCACACTTTGTTTGTTTTGATGGATTAAAACTGAGAAA  600

seq1  AGAGCACCCATGGAAAGTCACAGACTCACCTTATCTCAGAGCTCCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCATGGAAAGTCACAGACTCACCTTATCTCAGAGCTCCATAAA  650

seq1  AGTCATCCGATGATCTTACAGACTTATCCAATGTATCAGACATGTCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCGATGATCTTACAGACTTATCCAATGTATCAGACATGTCTGGC  700

seq1  AATATTCCCAACAAATGATCTTTCAACTAGCACTGAACCGCTTATGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCCAACAAATGATCTTTCAACTAGCACTGAACCGCTTATGCCCC  750

seq1  ATTCAGGCACTCCACGGCACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCAGGCACTCCACGGCACTGT-AAAAAAAAAAAAAAAAAAAAAAAAAA  799

seq1  AACAAACGCTCCACGTTGTCACAGAG-TTGTT-CTTTACAGTCAGATAAC  848
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  AACAAACGCTCCACGTTGTCACAGAGTTTGTTCCTTTACAGTCAGATAAC  849

seq1  ATCTACCACCAGTTGATAAT-GGCCTTCCCCTTTGTACATCTCACTACAT  897
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTACCACCAGTTGATAATGGGCCTTCCCCTTTGTACATCTCACTACAT  899

seq1  CAG-ATGCTT-GAAG-AGGTCATT-GGCCAGTGAGTCTTTGCA-GGCTAA  942
      ||| |||||| |||| |||||||| |||||||||||||||||| ||||||
seq2  CAGAATGCTTGGAAGAAGGTCATTGGGCCAGTGAGTCTTTGCAGGGCTAA  949

seq1  AC-TTCAATGTGCTGTCACTGTTTCTCAGGT-GGCAC-GGAGTTGAACTC  989
      || |||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  ACTTTCAATGTGCTGTCACTGTTTCTCAGGTGGGCACGGGAGTTGAACTC  999

seq1  CCCTTGGAGTTATCAATGGGCTCTTTCAACCTCCAAGAGGTATTT-AGT-  1037
      ||||||||||||||||||||||||||||||||||| ||||||||| ||| 
seq2  CCCTTGGAGTTATCAATGGGCTCTTTCAACCTCCAGGAGGTATTTAAGTG  1049

seq1  GTGCACTCGTTTTGTTCTG-AGCAGTTAACTAGGTGTTAGAAAGG-ACAG  1085
      ||||||||| ||||||||| ||||| || ||| ||| |||||||| ||||
seq2  GTGCACTCG-TTTGTTCTGAAGCAG-TACCTA-GTG-TAGAAAGGAACAG  1095

seq1  GCATGGGAAGGAAAGCAGGCTCTTGGCCTAACGGATAGCAGACTCCTGAA  1135
       |||||  | ||||||| |||||  ||||||||||| ||| |||||||||
seq2  CCATGG--AAGAAAGCA-GCTCT--GCCTAACGGAT-GCA-ACTCCTGAA  1138

seq1  GAACAGAGGGA  1146
      |||||||||||
seq2  GAACAGAGGGA  1149