BAC Information

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BAC

Clone NameB6Ng01-267E15
Chromosome19 (Build37)
Map Location 18,970,534 - 19,087,605
singlet/doubletdoublet
Overlap geneRorb
Upstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267E15.bB6Ng01-267E15.g
ACCGA070458GA070459
length1,2211,164
definitionB6Ng01-267E15.b B6Ng01-267E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,086,402 - 19,087,605)(18,970,534 - 18,971,699)
sequence
gaattcctttctcagaagaaaaacatacattgaaaaaacaaaaagcttta
tacaaactattttgaatttttggacttgacctaaaagtattcaatgactt
tcaaaaatggtgtatgaatgaatataatgaattctatattattgtaccaa
agagtaaatgttgagggtggcttttactcttgcacattgtgttaagtaaa
acaacctgaccgagtaaatgctctggtagcaacggaagaacttgggcttt
tgtttgagaagtacatatgtgtcttctctgccttgacattataggcagta
gagttagcatagcctatttctgaaggaaggtgtagacagtctgtggaagg
actcaccatcatacactatctggcaatacagatattaggaagtaatctcc
agaataggttcattccccaacattggcttctgggtgtgttctgataaaca
taagcacccagcatgtctaggctggggctttttcactgatacaaggaaat
gggactcagctataaggtagaaagtgttcctgtttagtaatggctaccac
atggtggcactgtctttacgacagacacaggtcaatcacctttcaatgtg
atttcattttattctttaggcaatcacagaaacagagatcattaccccag
ttgattaaagaagaaacagacacaaaggagttgatcttgaccaaagacat
gactcttatgtacactagtccaagtactgaccagtgcatgcccaagaccc
acactgcaaaccagtaattccaaaggtctggtcttcagtcattttcttcc
agaccagcctctactatcacaaggcttcctggggtcttggaagatccaag
tcacaattctactgtgcctcatggttgcccaagaacaagaatcaaggcca
gtaggtacttggtgtattgctaggtattaaaatatttgaaatagtgataa
cccgggtgctgcatttgttttactttgacaccatggctggggattgtatt
catgagtgctgggatggaacagtgagcttcacaacgtgctaaccaagtag
ttctacttattggaacatcctattttaaggactgaaaaggttgctatttt
ttcttagtgacttatagtggaaatgggcatcccactgggttaattggcca
ggagagatggaagaaaaggactataaatgtttgtgccatagttattaggt
atatatattgaaaaaaacttt

gaattccagactgcactcctgtgagccataggataattctcttgggggat
actgcttcctcatcctttcttctcaccacctcttccattcttctttccct
gactcttcttatttcttctttctctttttccattcctccacctacttttt
cctttaacagatttctgtctttctgatatatcctttacatctgttatatc
cagtaagctgcaaatgaagatagagaaatatcatccgttttacaactgag
acacaaactttcttagatgtgggaattagaagatgtgagaattttgaaaa
aaaagttgagagttcaaggaatagataggaaaagtttcaaaagagatagt
ttctcccaaatataatgtaagagggactagaactcaggctctgttaactt
accagttagccaaataacagccacatttgaattttaaagcaaatactatt
attccactattgtgttacaaaaaatatttacatgtttatgtgagtagaga
ctgagcttgggatcttagtaagagcatcattgaggtatgtcaggaggaat
tctggtctatgttttcttagagagaataagccgctaagtatgtgatttca
aatattagttgcaaaattaatattctgttaaattatttgtatgtgtacat
gtgtttgtataaatagaaaatatctgttttattggccatggaagacttca
aatgaaatgacttaaaatatttttattacatttactcacattgactcatt
tgtcattttagactagagattctcaaccttcctaatgctgtgactctttt
atacaatttcccatatcgtggtgacctacaaccctatcattattattatt
attattattattattattattaatttttttgggggtttttcaagacaggg
tttctctgtgtagccctggcttgtcctggaactcactttgtacaccaggc
tgccctcaactcagaaattcttacctgctctgcctcccaagtactggaat
tagaggtgagcaccaccatgcccggcaataacattatttttattgctact
atataacttttatctactaactgtatgattggcaatggcaaatattaaga
attattagatttgccaattggggttggcatagctgagaactgctgttttt
aaccgaagggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19086402_19087605
seq2: B6Ng01-267E15.b_44_1264 (reverse)

seq1  AAAGTTTTTTTTCAATATATATTACTATATACATA----GCAAACATTTA  46
      |||| |||||||||||||||||  ||| |||  ||     ||||||||||
seq2  AAAG-TTTTTTTCAATATATATACCTA-ATAACTATGGCACAAACATTTA  48

seq1  TAGTTCCTTTC-TCCTTCTCTC--TGCCATTTA--CCAGT-GGATTGCCA  90
      |||| | |||| ||| ||||||   |||| |||  ||||| ||||  |||
seq2  TAGTCCTTTTCTTCCATCTCTCCTGGCCAATTAACCCAGTGGGATGCCCA  98

seq1  TTT-CACTAT-AGTCACT---AGAAAATAGCAA-CTTTTCAGGTCTTAAA  134
      ||| |||||| |||||||   | |||||||||| ||||||||  ||||||
seq2  TTTCCACTATAAGTCACTAAGAAAAAATAGCAACCTTTTCAGTCCTTAAA  148

seq1  ATAGGATGTTCCCAATAGTAG-ACTACTTGGTTAGCACG-TGTGAAGCTC  182
      |||||||||||| |  ||||| ||||||||||||||||| ||||||||||
seq2  ATAGGATGTTCCAATAAGTAGAACTACTTGGTTAGCACGTTGTGAAGCTC  198

seq1  ACTGTTCCCATCCCAGCACTCATGAATACAATCCCCAGCCATGGTGTCAA  232
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTT-CCATCCCAGCACTCATGAATACAATCCCCAGCCATGGTGTCAA  247

seq1  AGTAAAACAAATGCAGCA-CCGGGTTATCACTATTTCAAATATTTTAATA  281
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTAAAACAAATGCAGCACCCGGGTTATCACTATTTCAAATATTTTAATA  297

seq1  CCTAGCAATACACCAAGTACCTACTGGCC-TGATTCTTGTTCTTGGGCAA  330
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTAGCAATACACCAAGTACCTACTGGCCTTGATTCTTGTTCTTGGGCAA  347

seq1  CCATGAGGCACAGTAGAATTGTGACTTGGATCTTCCAAGACCCCAGGAAG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGCACAGTAGAATTGTGACTTGGATCTTCCAAGACCCCAGGAAG  397

seq1  CCTTGTGATAGTAGAGGCTGGTCTGGAAGAAAATGACTGAAGACCAGACC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGATAGTAGAGGCTGGTCTGGAAGAAAATGACTGAAGACCAGACC  447

seq1  TTTGGAATTACTGGTTTGCAGTGTGGGTCTTGGGCATGCACTGGTCAGTA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTACTGGTTTGCAGTGTGGGTCTTGGGCATGCACTGGTCAGTA  497

seq1  CTTGGACTAGTGTACATAAGAGTCATGTCTTTGGTCAAGATCAACTCCTT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTAGTGTACATAAGAGTCATGTCTTTGGTCAAGATCAACTCCTT  547

seq1  TGTGTCTGTTTCTTCTTTAATCAACTGGGGTAATGATCTCTGTTTCTGTG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTTTCTTCTTTAATCAACTGGGGTAATGATCTCTGTTTCTGTG  597

seq1  ATTGCCTAAAGAATAAAATGAAATCACATTGAAAGGTGATTGACCTGTGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTAAAGAATAAAATGAAATCACATTGAAAGGTGATTGACCTGTGT  647

seq1  CTGTCGTAAAGACAGTGCCACCATGTGGTAGCCATTACTAAACAGGAACA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTAAAGACAGTGCCACCATGTGGTAGCCATTACTAAACAGGAACA  697

seq1  CTTTCTACCTTATAGCTGAGTCCCATTTCCTTGTATCAGTGAAAAAGCCC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACCTTATAGCTGAGTCCCATTTCCTTGTATCAGTGAAAAAGCCC  747

seq1  CAGCCTAGACATGCTGGGTGCTTATGTTTATCAGAACACACCCAGAAGCC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGACATGCTGGGTGCTTATGTTTATCAGAACACACCCAGAAGCC  797

seq1  AATGTTGGGGAATGAACCTATTCTGGAGATTACTTCCTAATATCTGTATT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGGAATGAACCTATTCTGGAGATTACTTCCTAATATCTGTATT  847

seq1  GCCAGATAGTGTATGATGGTGAGTCCTTCCACAGACTGTCTACACCTTCC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAGTGTATGATGGTGAGTCCTTCCACAGACTGTCTACACCTTCC  897

seq1  TTCAGAAATAGGCTATGCTAACTCTACTGCCTATAATGTCAAGGCAGAGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATAGGCTATGCTAACTCTACTGCCTATAATGTCAAGGCAGAGA  947

seq1  AGACACATATGTACTTCTCAAACAAAAGCCCAAGTTCTTCCGTTGCTACC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATATGTACTTCTCAAACAAAAGCCCAAGTTCTTCCGTTGCTACC  997

seq1  AGAGCATTTACTCGGTCAGGTTGTTTTACTTAACACAATGTGCAAGAGTA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTACTCGGTCAGGTTGTTTTACTTAACACAATGTGCAAGAGTA  1047

seq1  AAAGCCACCCTCAACATTTACTCTTTGGTACAATAATATAGAATTCATTA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACCCTCAACATTTACTCTTTGGTACAATAATATAGAATTCATTA  1097

seq1  TATTCATTCATACACCATTTTTGAAAGTCATTGAATACTTTTAGGTCAAG  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCATACACCATTTTTGAAAGTCATTGAATACTTTTAGGTCAAG  1147

seq1  TCCAAAAATTCAAAATAGTTTGTATAAAGCTTTTTGTTTTTTCAATGTAT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATTCAAAATAGTTTGTATAAAGCTTTTTGTTTTTTCAATGTAT  1197

seq1  GTTTTTCTTCTGAGAAAGGAATTC  1204
      ||||||||||||||||||||||||
seq2  GTTTTTCTTCTGAGAAAGGAATTC  1221


seq1: chr19_18970534_18971699
seq2: B6Ng01-267E15.g_66_1229

seq1  GAATTCCAGACTGCACTCCTGTGAGCCATAGGATAATTCTCTTGGGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTGCACTCCTGTGAGCCATAGGATAATTCTCTTGGGGGAT  50

seq1  ACTGCTTCCTCATCCTTTCTTCTCACCACCTCTTCCATTCTTCTTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCCTCATCCTTTCTTCTCACCACCTCTTCCATTCTTCTTTCCCT  100

seq1  GACTCTTCTTATTTCTTCTTTCTCTTTTTCCATTCCTCCACCTACTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTTATTTCTTCTTTCTCTTTTTCCATTCCTCCACCTACTTTTT  150

seq1  CCTTTAACAGATTTCTGTCTTTCTGATATATCCTTTACATCTGTTATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACAGATTTCTGTCTTTCTGATATATCCTTTACATCTGTTATATC  200

seq1  CAGTAAGCTGCAAATGAAGATAGAGAAATATCATCCGTTTTACAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTGCAAATGAAGATAGAGAAATATCATCCGTTTTACAACTGAG  250

seq1  ACACAAACTTTCTTAGATGTGGGAATTAGAAGATGTGAGAATTTTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTTTCTTAGATGTGGGAATTAGAAGATGTGAGAATTTTGAAAA  300

seq1  AAAAGTTGAGAGTTCAAGGAATAGATAGGAAAAGTTTCAAAAGAGATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAGAGTTCAAGGAATAGATAGGAAAAGTTTCAAAAGAGATAGT  350

seq1  TTCTCCCAAATATAATGTAAGAGGGACTAGAACTCAGGCTCTGTTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAAATATAATGTAAGAGGGACTAGAACTCAGGCTCTGTTAACTT  400

seq1  ACCAGTTAGCCAAATAACAGCCACATTTGAATTTTAAAGCAAATACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTAGCCAAATAACAGCCACATTTGAATTTTAAAGCAAATACTATT  450

seq1  ATTCCACTATTGTGTTACAAAAAATATTTACATGTTTATGTGAGTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTATTGTGTTACAAAAAATATTTACATGTTTATGTGAGTAGAGA  500

seq1  CTGAGCTTGGGATCTTAGTAAGAGCATCATTGAGGTATGTCAGGAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGGGATCTTAGTAAGAGCATCATTGAGGTATGTCAGGAGGAAT  550

seq1  TCTGGTCTATGTTTTCTTAGAGAGAATAAGCCGCTAAGTATGTGATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTATGTTTTCTTAGAGAGAATAAGCCGCTAAGTATGTGATTTCA  600

seq1  AATATTAGTTGCAAAATTAATATTCTGTTAAATTATTTGTATGTGTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTTGCAAAATTAATATTCTGTTAAATTATTTGTATGTGTACAT  650

seq1  GTGTTTGTATAAATAGAAAATATCTGTTTTATTGGCCATGGAAGACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTATAAATAGAAAATATCTGTTTTATTGGCCATGGAAGACTTCA  700

seq1  AATGAAATGACTTAAAATATTTTTATTACATTTACTCACATTGACTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGACTTAAAATATTTTTATTACATTTACTCACATTGACTCATT  750

seq1  TGTCATTTTAGACTAGAGATTCTCAACCTTCCTAATGCTGTGACTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTAGACTAGAGATTCTCAACCTTCCTAATGCTGTGACTCTTTT  800

seq1  ATACAATTTCCCATATCGTGGTGACCTACAACCCTATCATTATTATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTCCCATATCGTGGTGACCTACAACCCTATCATTATTATTATT  850

seq1  ATTATTATTATTATTATTATTAATTTTTTTGGGGGTTTTTCAAGACAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTAATTTTTTTGGGGGTTTTTCAAGACAGGG  900

seq1  TTTCTCTGTGTAGCCCTGGC-TGTCCTGGAACTCACTTTGTACACCAGGC  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGCCCTGGCTTGTCCTGGAACTCACTTTGTACACCAGGC  950

seq1  TGCCCTCAAACTCAG-AATTC-TACCTGCCTCTGCCTCCCAAGTACTGGA  997
      ||||||| ||||||| ||||| |||||| |||||||||||||||||||||
seq2  TGCCCTC-AACTCAGAAATTCTTACCTG-CTCTGCCTCCCAAGTACTGGA  998

seq1  ATTAGAGGTGAGCACCACCATGCCCGGC-ATAACATTATTTTTATTGCTA  1046
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAGAGGTGAGCACCACCATGCCCGGCAATAACATTATTTTTATTGCTA  1048

seq1  CTATATAACTTTAATTTTACT-ACTGTTATGAATTGTAATGTAAATATTT  1095
      |||||||||||| | | |||| |||| ||||| | | ||||  || || |
seq2  CTATATAACTTTTA-TCTACTAACTG-TATGATTGGCAATGGCAA-ATAT  1095

seq1  TAGGAATTA-TAGATTTGCCAAAATGGGTGTGGCCCATAGGTTGAGAACT  1144
      || |||||| |||||||||| || ||||  |||  |||| | ||||||||
seq2  TAAGAATTATTAGATTTGCC-AATTGGGGTTGG--CATA-GCTGAGAACT  1141

seq1  GCTGTTTTAAACCG-AGGGAGAC  1166
      |||||||| ||||| ||||||||
seq2  GCTGTTTTTAACCGAAGGGAGAC  1164


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