BAC Information

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BAC

Clone NameB6Ng01-270D03
Chromosome12 (Build37)19 (Build37)
Map Location 116,987,211 - 116,987,43834,520,162 - 34,521,319
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream geneIghv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886
Downstream geneIghv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270D03.bB6Ng01-270D03.g
ACCGA072600GA072601
length1,0161,154
definitionB6Ng01-270D03.b B6Ng01-270D03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,987,211 - 116,987,438)(34,520,162 - 34,521,319)
sequence
gaattctttgttcagatctgagccccatttttaatggggttatttgattt
tctggagtccatcttcttgaattctttatatatatatatattagatatta
gtcctgtatctgatttaggattggtaaagatcctttcccaatctcttggt
ggcctttttgtcttattgacggtgttttttgccttgcagaagctctatat
caccttttgcagatgatataattgtatacataagtgaccctaaaaattcc
accagagaactcctaaactcgataaacagcttcagtgaagtagctggata
taaaattaactcagacaagtcaatggcctttcactacacaaagaataaac
aggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaat
aaaagaaaataccttggcgtgactctaactaaggaagtgaaagatctgta
tgataagaacttcaagtctctgaagaaagaaattaaagaagatctcagaa
gatggaaagatctcccatgctcatggattggcaggatcaatatagtaaaa
atggctatcttgccaaaagtaatctacagattcaatgcaatccccatcaa
aattccaactcaattcttcaacaaattagtaagggcaatctgcagattca
tctggaataacaaaaaaacctaggatagcaaaaactcttctcaagataaa
agaacctctggtggaatcaccatgcctgacctaaagctgtactacagagc
aattgtgataaaaactgcatggtactggtatagtgacagacaagtagacc
aatggaatagaattgaagacccagagatgaacccacacacctatggtcac
ttgatctttgacaagggagctaaaaccatccagtggaaaaaagacagcat
tttcaacaaatggtgctggcacaagtggtggttatcatgtagaagaatgc
gaattgatccattcctatctactttgtactaaggtcaatctaagtggatt
aaggaactccacataa
gaattctctgccaaatacagctatgtgatttggaaccttatcttttgtcc
agaaaaagcaaatgaaatctgtgtctttgtgactcaaatggccgaagtgg
tcactttcattttctctatgtcttcaggctgttgtaacaggacacagctg
ggatgaatcagaggacagcaacatgtctcacccttctccataagcctcct
tttcctgttaactgcttcttaaccactagcatatgcttatgaaactcgcc
cagaaaatggaattgaataattgggaacagaatttctgagacccgttata
acaatgtataggcaacaataacctttatctcaatgccaagacataaaaaa
aaaaaaatctcaactctgtgctgaaaatagagattactgctccctttagt
gtgggttcagaggtatgtgaggacaaaagtcctcagtatctaaggattag
agaaaaggagagattttcctgtaaagaggaagaaagtgttctaaatccat
aaatatgattacttgtgtgggattggatcctttgatgcatgaagaagaag
gtgagcaacacatgagcctgggaatagggagaacttcagtttggaaaggg
agggaaaaaaagcagtccaggggagcgggggagagtttatcagagccagc
atagtgaaggagccagcccccagatactaactcagctttctgggtgctga
agtcccagaaagtatacatccttgctttctgaagtaaaaaggtaggatac
ttattcataaaatctggaattatgtgccagagaattcacttttatttgac
aaatattgaactccgttacccatcatcataaaataagaaacaagattaag
accctgttcctatggagtttgtaatctgggtcatgtgcttaagataaatg
tcttcatatgaagcccaactgcctcctggtaaaaagttcatcatatcaag
cacattcctccagcctccacccccaaatacattagatctgattgcatttt
cctaggcaaagccaggaggttgcattcctgctgataaagctttcagattc
atcatgccacgctacacacattctaattcacatgggcagtcgggcatgag
acctctatttcttagggttgacatagatctgcctccctgaagtatgcaat
acct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116987211_116987438
seq2: B6Ng01-270D03.b_334_561 (reverse)

seq1  GGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGAC  50

seq1  TTGAAGTTTTTATCATACAGATCTTTCACTTTCTTAGTTAGAGTCACGCC  100
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TTGAAGTTCTTATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCC  100

seq1  AAGATATTTTATATTATTTATGACTATTGGGAAGGGTGTTGTTTCCCTAA  150
      ||| |||||| | |||||| ||||||||| ||||||||||||||||||||
seq2  AAGGTATTTTCTTTTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAA  150

seq1  TTTCATTCTCAGCCTGTTTATTCTTTGTGTAGAGAAAAGCCATTGAATTG  200
      |||| ||||||||||||||||||||||||||| |||| |||||||| |||
seq2  TTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGTGAAAGGCCATTGACTTG  200

seq1  TTTGAGTTAATTTTATATCCAGCTACTT  228
      | ||||||||||||||||||||||||||
seq2  TCTGAGTTAATTTTATATCCAGCTACTT  228

seq1: chr19_34520162_34521319
seq2: B6Ng01-270D03.g_65_1218

seq1  GAATTCTCTGCCAAATACAGCTATGTGATTTGGAACCTTATCTTTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCAAATACAGCTATGTGATTTGGAACCTTATCTTTTGTCC  50

seq1  AGAAAAAGCAAATGAAATCTGTGTCTTTGTGACTCAAATGGCCGAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGCAAATGAAATCTGTGTCTTTGTGACTCAAATGGCCGAAGTGG  100

seq1  TCACTTTCATTTTCTCTATGTCTTCAGGCTGTTGTAACAGGACACAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCATTTTCTCTATGTCTTCAGGCTGTTGTAACAGGACACAGCTG  150

seq1  GGATGAATCAGAGGACAGCAACATGTCTCACCCTTCTCCATAAGCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATCAGAGGACAGCAACATGTCTCACCCTTCTCCATAAGCCTCCT  200

seq1  TTTCCTGTTAACTGCTTCTTAACCACTAGCATATGCTTATGAAACTCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTAACTGCTTCTTAACCACTAGCATATGCTTATGAAACTCGCC  250

seq1  CAGAAAATGGAATTGAATAATTGGGAACAGAATTTCTGAGACCCGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGAATTGAATAATTGGGAACAGAATTTCTGAGACCCGTTATA  300

seq1  ACAATGTATAGGCAACAATAACCTTTATCTCAATGCCAAGACATAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATAGGCAACAATAACCTTTATCTCAATGCCAAGACATAAAAAA  350

seq1  AAAAAAATCTCAACTCTGTGCTGAAAATAGAGATTACTGCTCCCTTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCTCAACTCTGTGCTGAAAATAGAGATTACTGCTCCCTTTAGT  400

seq1  GTGGGTTCAGAGGTATGTGAGGACAAAAGTCCTCAGTATCTAAGGATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCAGAGGTATGTGAGGACAAAAGTCCTCAGTATCTAAGGATTAG  450

seq1  AGAAAAGGAGAGATTTTCCTGTAAAGAGGAAGAAAGTGTTCTAAATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAGAGATTTTCCTGTAAAGAGGAAGAAAGTGTTCTAAATCCAT  500

seq1  AAATATGATTACTTGTGTGGGATTGGATCCTTTGATGCATGAAGAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGATTACTTGTGTGGGATTGGATCCTTTGATGCATGAAGAAGAAG  550

seq1  GTGAGCAACACATGAGCCTGGGAATAGGGAGAACTTCAGTTTGGAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAACACATGAGCCTGGGAATAGGGAGAACTTCAGTTTGGAAAGGG  600

seq1  AGGGAAAAAAAGCAGTCCAGGGGAGCGGGGGAGAGTTTATCAGAGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAAAGCAGTCCAGGGGAGCGGGGGAGAGTTTATCAGAGCCAGC  650

seq1  ATAGTGAAGGAGCCAGCCCCCAGATACTAACTCAGCTTTCTGGGTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAGGAGCCAGCCCCCAGATACTAACTCAGCTTTCTGGGTGCTGA  700

seq1  AGTCCCAGAAAGTATACATCCTTGCTTTCTGAAGTAAAAAGGTAGGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGAAAGTATACATCCTTGCTTTCTGAAGTAAAAAGGTAGGATAC  750

seq1  TTATTCATAAAATCTGGAATTATGTGCCAGAGAATTCACTTTTATTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATAAAATCTGGAATTATGTGCCAGAGAATTCACTTTTATTTGAC  800

seq1  AAATATTGAACTCCGTTACCCATCATCATAAAATAAGAAACAAGATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAACTCCGTTACCCATCATCATAAAATAAGAAACAAGATTAAG  850

seq1  ACCCTGTTCCTATGGAGTTTGTAATCTGGGTCATGTGCTTAAGATAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTCCTATGGAGTTTGTAATCTGGGTCATGTGCTTAAGATAAATG  900

seq1  TCTTCATATGAAG-CCAACTGCCTCCTGGTAAAAAGTTCATCATATCAAG  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATGAAGCCCAACTGCCTCCTGGTAAAAAGTTCATCATATCAAG  950

seq1  CACATTCCTCCAGCCT-CACCCCCAAATACATTAGATCTGATTGCATTTT  998
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACATTCCTCCAGCCTCCACCCCCAAATACATTAGATCTGATTGCATTTT  1000

seq1  CCTAGGCAAAAGCCA-GAGGTTGCATTCCTGCTTGATAAAGCTTTCAAGA  1047
      ||||||| ||||||| |||||||||||||||| ||||||||||||||   
seq2  CCTAGGC-AAAGCCAGGAGGTTGCATTCCTGC-TGATAAAGCTTTCA--G  1046

seq1  ATTCAATCATG-CACGCTACACACATCTTAATTCCAACATTGGCAGTCGG  1096
      |||| |||||| ||||||||||||||  ||||||  |||| |||||||||
seq2  ATTC-ATCATGCCACGCTACACACATTCTAATTC--ACATGGGCAGTCGG  1093

seq1  GCATGAGA-CTCTA-TTCTTTGGGTTGACAATAGGATCTTGCTCTCCCTG  1144
      |||||||| ||||| ||||| |||||||| ||| |||| ||| |||||||
seq2  GCATGAGACCTCTATTTCTTAGGGTTGAC-ATA-GATC-TGC-CTCCCTG  1139

seq1  AAGTATGC-ATACCT  1158
      |||||||| ||||||
seq2  AAGTATGCAATACCT  1154