BAC Information

Click to search

BAC

Clone NameB6Ng01-270M07
Chromosome19 (Build37)
Map Location 19,107,143 - 19,108,284
singlet/doubletsinglet
Overlap geneRorb
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
Downstream geneLOC100042218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270M07.bB6Ng01-270M07.g
ACCGA073024GA073025
length9941,125
definitionB6Ng01-270M07.b B6Ng01-270M07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagatggaaagaacccagat
gccccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagtgcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggatatccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcctctccttagaattggga
acaaaacacccatagaaggagttacagagacaaagtttggagctgagatg
aaaagatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagtagccaggagctaaagggatctgc

gaattcttttttttttcttgccaatcatttttttttttaaccaatcagtt
caggagtatttactttacaaaaaaaataagcacattattttttaaaatat
aaaataaaatacacaaggtatatcagtcatctgtaagtatttttaagctc
tagagaaatagtgctataaattatatgattgaaaagtccatagaagaatg
ttaccgtatcttgataccctacgggtggtcataagttcaatatcagattg
gaaggaatcactttatgatgagagtatttcacagcagggatatttggatt
gtggaagcagatgcttgccatgtgggaagactggtgtttgaaggatataa
ttggcctcacactttatggttgatgccggtggggtcttcaaaatggggct
gaaggtcatgaccttcccttatttcatagttttggtgaagctgtgaaaga
gattaactcatttctaacaaacctcacttgttcacagaaattttctgttg
gtcttaggttcatggcagaagagctgaaaaccaaaataagtctggtttcc
ttctcaaatcatctcttcatcacatctcctgaaactggctttaatttgtt
aacccagtgagatgggggtggagctcatacagactgttggtttgtcactt
agcaaagagttgacttggcaggttctattctggttcctttttatatccat
cctttgtatgtcacagacatatcctccgtgcctgtagctgcatggaaccc
ttttctttcaagcttcagatcattaggagtgtatgaaagagtagccaggc
atggtggcaaatgtctttaatcccagcactcaggaggcagaggccaacct
ggtctacacagagagagttttaggacagccagggctacacagagaaaccc
tgttttggaaaacaaaaccaatagaaaaaaaaagaagaaagaaagaagaa
ggaaagaaagaaaggaaagaaagaaagattcttcaaggcactgggggatt
ttgtgagagaagaaagtctgtaaatatatcatatatatttgatattattg
atttaatatatcatatatcctagactgtagccaatgtcattaatgcctct
gtgatccttgagcttacagtgtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19107143_19108284
seq2: B6Ng01-270M07.g_65_1189

seq1  GAATTCTTTTTTTTTTCTTGCCAATCATTTTTTTTTTTAACCAATCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTCTTGCCAATCATTTTTTTTTTTAACCAATCAGTT  50

seq1  CAGGAGTATTTACTTTACAAAAAAAATAAGCACATTATTTTTTAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTATTTACTTTACAAAAAAAATAAGCACATTATTTTTTAAAATAT  100

seq1  AAAATAAAATACACAAGGTATATCAGTCATCTGTAAGTATTTTTAAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATACACAAGGTATATCAGTCATCTGTAAGTATTTTTAAGCTC  150

seq1  TAGAGAAATAGTGCTATAAATTATATGATTGAAAAGTCCATAGAAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATAGTGCTATAAATTATATGATTGAAAAGTCCATAGAAGAATG  200

seq1  TTACCGTATCTTGATACCCTACGGGTGGTCATAAGTTCAATATCAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGTATCTTGATACCCTACGGGTGGTCATAAGTTCAATATCAGATTG  250

seq1  GAAGGAATCACTTTATGATGAGAGTATTTCACAGCAGGGATATTTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATCACTTTATGATGAGAGTATTTCACAGCAGGGATATTTGGATT  300

seq1  GTGGAAGCAGATGCTTGCCATGTGGGAAGACTGGTGTTTGAAGGATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCAGATGCTTGCCATGTGGGAAGACTGGTGTTTGAAGGATATAA  350

seq1  TTGGCCTCACACTTTATGGTTGATGCCGGTGGGGTCTTCAAAATGGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCACACTTTATGGTTGATGCCGGTGGGGTCTTCAAAATGGGGCT  400

seq1  GAAGGTCATGACCTTCCCTTATTTCATAGTTTTGGTGAAGCTGTGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATGACCTTCCCTTATTTCATAGTTTTGGTGAAGCTGTGAAAGA  450

seq1  GATTAACTCATTTCTAACAAACCTCACTTGTTCACAGAAATTTTCTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTCATTTCTAACAAACCTCACTTGTTCACAGAAATTTTCTGTTG  500

seq1  GTCTTAGGTTCATGGCAGAAGAGCTGAAAACCAAAATAAGTCTGGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGTTCATGGCAGAAGAGCTGAAAACCAAAATAAGTCTGGTTTCC  550

seq1  TTCTCAAATCATCTCTTCATCACATCTCCTGAAACTGGCTTTAATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATCATCTCTTCATCACATCTCCTGAAACTGGCTTTAATTTGTT  600

seq1  AACCCAGTGAGATGGGGGTGGAGCTCATACAGACTGTTGGTTTGTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTGAGATGGGGGTGGAGCTCATACAGACTGTTGGTTTGTCACTT  650

seq1  AGCAAAGAGTTGACTTGGCAGGTTCTATTCTGGTTCCTTTTTATATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAGTTGACTTGGCAGGTTCTATTCTGGTTCCTTTTTATATCCAT  700

seq1  CCTTTGTATGTCACAGACATATCCTCCGTGCCTGTAGCTGCATGGAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTATGTCACAGACATATCCTCCGTGCCTGTAGCTGCATGGAACCC  750

seq1  TTTTCTTTCAAGCTTCAGATCATTAGGAGTGTATGAAAGAGTAGCCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCAAGCTTCAGATCATTAGGAGTGTATGAAAGAGTAGCCAGGC  800

seq1  ATGGTGGCAAATGTCTTTAATCCCAGCACTCAGGAGGCAGAGGCCAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCAAATGTCTTTAATCCCAGCACTCAGGAGGCAGAGGCCAACCT  850

seq1  GGTCTACACAGAGAGAGTTTTAGGACAGCCAGGGCTACACAGAGAAACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACACAGAGAGAGTTTTAGGACAGCCAGGGCTACACAGAGAAACCC  900

seq1  TGTTTTGGAAAACAAAACCAAAATAGAAAAAAAAAAGAAAGAAAAGAAAA  950
      ||||||||||||||||||||| | | ||||||| ||||||||||  | ||
seq2  TGTTTTGGAAAACAAAACCAATAGAAAAAAAAAGAAGAAAGAAAGAAGAA  950

seq1  GAAAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGAAAAGATTC-TC  999
      | |||||||   |||| |||||||               |||||||| ||
seq2  GGAAAGAAA--GAAAGGAAAGAAA--------------GAAAGATTCTTC  984

seq1  AAGGCACTGGGGGATTTTGTGAAGGAAGAGAAAGTCTGTAAATATATCAT  1049
      ||||||||||||||||||||||  ||  ||||||||||||||||||||| 
seq2  AAGGCACTGGGGGATTTTGTGA--GAGAAGAAAGTCTGTAAATATATCA-  1031

seq1  TATATATTTGATATATTTGATT--ATATATCATATATCTTAGGACTGTAG  1097
      ||||||||||||||  ||||||  |||||||||||||| || ||||||||
seq2  TATATATTTGATATTATTGATTTAATATATCATATATCCTA-GACTGTAG  1080

seq1  -CAATGTCATTTTAATG-CTCTGTGATCC-TGAGCTACCAAGTGTGAA  1142
       ||||||||  |||||| ||||||||||| ||||||  | ||||||||
seq2  CCAATGTCA--TTAATGCCTCTGTGATCCTTGAGCTTAC-AGTGTGAA  1125


| Home | SequenceCutter | Blast | Download |