BAC Information

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BAC

Clone NameB6Ng01-272G18
Chromosome19 (Build37)
Map Location 4,548,070 - 4,673,220
singlet/doubletdoublet
Overlap genePcx, Lrfn4, Rce1, Gm960
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik
Downstream geneSpnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272G18.bB6Ng01-272G18.g
ACCGA074253GA074254
length1,162696
definitionB6Ng01-272G18.b B6Ng01-272G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,672,069 - 4,673,220)(4,548,070 - 4,548,762)
sequence
gaattcagagccatttccagccccctttctcctgcattgatgttcccttc
atttctgtactatcttactattttaaacagatgtccctgatttcacagaa
aagtaattgaatcagaaaagggagatttctctaagtaaggcagtcatcca
ctggtaacttaaaggacttatgccgagtgtctgggttcagtggcgaggtc
actgagcttcggtgcagtgtggccttgctgctgccattgtactcagtgct
ttgtgggctgagttacactcacagagcacagcgacaacaatggtctctgt
taaaatgaatgtctggggttttatttggggaaaccacttttaaaaaaata
gttaaagcattattatttcaagacgaattcagtgattagacttttaaagt
tgaattaacttgttatagtgcctttattcctaattgttctacagggcact
gttttattaaagtgggaggtttttgttttgttttggtttggtttggtttt
gtaactcaggtacaggaaataaagaagagagatggtgcatgctatgctat
tctctctgttgtggataatccatgcccctcccagctgctctgtggaaagc
acggtctgagtcacacatacaaaacacgaggaagctcattcctaaggcaa
aaacggcgagactttgactcttgctaaggctacaatagtttaaagagcac
aaacctgaaacggtcattcttgaacttttccgttttcagctctaaattaa
ttcccttagtggacttgtgtttattaagtaatgagctgatttgttgaaaa
aatgcaggactatcagctagaatgttggcactggacatgactttatggaa
actgaaatttcagattggtttaactaatctaaaaaaaattacaaacagct
atcttttcctctagaaagtaactctaaatgtttgaaacaatttgccgatg
taataaccagttcccatatttttgctttttgcaggtaatctttcatcagg
taaagggccttcttggcttctgatgcagtcctgatttgctggcattcctt
cctcatataagaaattacagcctgcgctacccagcctctctgcaagctgg
ctctggcttcagaggagggaggccgtctccaagacgcatccaggcatacc
acccctgccaag
gaattctgggaaattttcagaaggtatataaatgctggggccctactagg
tggagttggttgttcagggggattgattgtggtttgtgagtagtcctgtt
caaagtagaaacaaagacattaaattcacaaatcactttctctctcctct
atcctttttctcctgcctagtgatagggggtgaaatgagggggataaagg
atgggaaaaagaagccacagagtcccgaagcctggctgcagatgagaatt
cacatggttattattcataataactctcaaatggaatcagcccaaacttt
caccacctaatgaatggattcttattcagcggcaagaaatagtgaaccac
tgacacttgctgcagcctggggaagcttaagaatactgctgcctcagaga
ccaggccaaaaggcgacatgctgggtgacattcctgggcaccactagcat
gggcagaaagccagagtggtgatttccagggttggaggaacagagaatgg
ggtatctggttttgttttgttttgctgatggaagtgctctgaaatagatg
gtggtggtggttgcacaggatcgtaactctattgagacccactcagctct
gtactttaacagctgcagtggtgaaaacatgacacactcagcagaagtta
gcaaactcaaagtttaatctcctcccctgcacacttgtctttgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4672069_4673220
seq2: B6Ng01-272G18.b_46_1207 (reverse)

seq1  CCTGGCA-GGGTGCTATGCCT-GATGCGTCTTGAGAACGGCCCCCCTCCT  48
      | ||||| ||||| ||||||| |||||||||||   |||||| |||||||
seq2  CTTGGCAGGGGTGGTATGCCTGGATGCGTCTTGGAGACGGCCTCCCTCCT  50

seq1  CTGAAGCCAGAGCCAGCTTTGCAGAGAGCCTGGGTAGCGCAGGCTGT-AT  97
      ||||||||||||||||| |||||||||| |||||||||||||||||| ||
seq2  CTGAAGCCAGAGCCAGC-TTGCAGAGAGGCTGGGTAGCGCAGGCTGTAAT  99

seq1  TTC-TATATGA-GAAGGAATGCCAACAAATCAGAACTGCATCAGGAGCCA  145
      ||| ||||||| |||||||||||| |||||||| |||||||||| |||||
seq2  TTCTTATATGAGGAAGGAATGCCAGCAAATCAGGACTGCATCAGAAGCCA  149

seq1  AGAAGG-CCTTTACCTGATGAAAGATTACCTGCAAAAAGC-AAAATATGG  193
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAGGCCCTTTACCTGATGAAAGATTACCTGCAAAAAGCAAAAATATGG  199

seq1  GAACTGGTTA-TACATCGGCAAATTGTTTC-AACATTTAGAGTTACTTTC  241
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GAACTGGTTATTACATCGGCAAATTGTTTCAAACATTTAGAGTTACTTTC  249

seq1  TAGAGG-AAAGATAGCTGTTTGTAA-TTTTTTTAGATTAGTTAAACCAAT  289
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGAGGAAAAGATAGCTGTTTGTAATTTTTTTTAGATTAGTTAAACCAAT  299

seq1  CTGAAATTTCAGTTTCCATAAAGTCATGTCCAGTGCCAACATTCTAGCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTCAGTTTCCATAAAGTCATGTCCAGTGCCAACATTCTAGCTG  349

seq1  ATAGTCCTGCATTTTTTCAACAAATCAGCTCATTACTTAATAAACACAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTGCATTTTTTCAACAAATCAGCTCATTACTTAATAAACACAAG  399

seq1  TCCACTAAGGGAATTAATTTAGAGCTGAAAACGGAAAAGTTCAAGAATGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAAGGGAATTAATTTAGAGCTGAAAACGGAAAAGTTCAAGAATGA  449

seq1  CCGTTTCAGGTTTGTGCTCTTTAAACTATTGTAGCCTTAGCAAGAGTCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTCAGGTTTGTGCTCTTTAAACTATTGTAGCCTTAGCAAGAGTCAA  499

seq1  AGTCTCGCCGTTTTTGCCTTAGGAATGAGCTTCCTCGTGTTTTGTATGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGCCGTTTTTGCCTTAGGAATGAGCTTCCTCGTGTTTTGTATGTG  549

seq1  TGACTCAGACCGTGCTTTCCACAGAGCAGCTGGGAGGGGCATGGATTATC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGACCGTGCTTTCCACAGAGCAGCTGGGAGGGGCATGGATTATC  599

seq1  CACAACAGAGAGAATAGCATAGCATGCACCATCTCTCTTCTTTATTTCCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGAGAGAATAGCATAGCATGCACCATCTCTCTTCTTTATTTCCT  649

seq1  GTACCTGAGTTACAAAACCAAACCAAACCAAAACAAAACAAAAACCTCCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAGTTACAAAACCAAACCAAACCAAAACAAAACAAAAACCTCCC  699

seq1  ACTTTAATAAAACAGTGCCCTGTAGAACAATTAGGAATAAAGGCACTATA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATAAAACAGTGCCCTGTAGAACAATTAGGAATAAAGGCACTATA  749

seq1  ACAAGTTAATTCAACTTTAAAAGTCTAATCACTGAATTCGTCTTGAAATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAATTCAACTTTAAAAGTCTAATCACTGAATTCGTCTTGAAATA  799

seq1  ATAATGCTTTAACTATTTTTTTAAAAGTGGTTTCCCCAAATAAAACCCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTTAACTATTTTTTTAAAAGTGGTTTCCCCAAATAAAACCCCA  849

seq1  GACATTCATTTTAACAGAGACCATTGTTGTCGCTGTGCTCTGTGAGTGTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATTTTAACAGAGACCATTGTTGTCGCTGTGCTCTGTGAGTGTA  899

seq1  ACTCAGCCCACAAAGCACTGAGTACAATGGCAGCAGCAAGGCCACACTGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCCACAAAGCACTGAGTACAATGGCAGCAGCAAGGCCACACTGC  949

seq1  ACCGAAGCTCAGTGACCTCGCCACTGAACCCAGACACTCGGCATAAGTCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGCTCAGTGACCTCGCCACTGAACCCAGACACTCGGCATAAGTCC  999

seq1  TTTAAGTTACCAGTGGATGACTGCCTTACTTAGAGAAATCTCCCTTTTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTACCAGTGGATGACTGCCTTACTTAGAGAAATCTCCCTTTTCT  1049

seq1  GATTCAATTACTTTTCTGTGAAATCAGGGACATCTGTTTAAAATAGTAAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATTACTTTTCTGTGAAATCAGGGACATCTGTTTAAAATAGTAAG  1099

seq1  ATAGTACAGAAATGAAGGGAACATCAATGCAGGAGAAAGGGGGCTGGAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACAGAAATGAAGGGAACATCAATGCAGGAGAAAGGGGGCTGGAAA  1149

seq1  TGGCTCTGAATTC  1152
      |||||||||||||
seq2  TGGCTCTGAATTC  1162

seq1: chr19_4548070_4548762
seq2: B6Ng01-272G18.g_62_757

seq1  GAATTCTGGGAAATTTTCAGAAGGTATATAAATGCTGGGGCCCTACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAATTTTCAGAAGGTATATAAATGCTGGGGCCCTACTAGG  50

seq1  TGGAGTTGGTTGTTCAGGGGGATTGATTGTGGTTTGTGAGTAGTCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGGTTGTTCAGGGGGATTGATTGTGGTTTGTGAGTAGTCCTGTT  100

seq1  CAAAGTAGAAACAAAGACATTAAATTCACAAATCACTTTCTCTCTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGAAACAAAGACATTAAATTCACAAATCACTTTCTCTCTCCTCT  150

seq1  ATCCTTTTTCTCCTGCCTAGTGATAGGGGGTGAAATGAGGGGGATAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTCTCCTGCCTAGTGATAGGGGGTGAAATGAGGGGGATAAAGG  200

seq1  ATGGGAAAAAGAAGCCACAGAGTCCCGAAGCCTGGCTGCAGATGAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAAAGAAGCCACAGAGTCCCGAAGCCTGGCTGCAGATGAGAATT  250

seq1  CACATGGTTATTATTCATAATAACTCTCAAATGGAATCAGCCCAAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTATTATTCATAATAACTCTCAAATGGAATCAGCCCAAACTTT  300

seq1  CACCACCTAATGAATGGATTCTTATTCAGCGGCAAGAAATAGTGAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTAATGAATGGATTCTTATTCAGCGGCAAGAAATAGTGAACCAC  350

seq1  TGACACTTGCTGCAGCCTGGGGAAGCTTAAGAATACTGCTGCCTCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGCTGCAGCCTGGGGAAGCTTAAGAATACTGCTGCCTCAGAGA  400

seq1  CCAGGCCAAAAGGCGACATGCTGGGTGACATTCCTGGGCACCACTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAAAAGGCGACATGCTGGGTGACATTCCTGGGCACCACTAGCAT  450

seq1  GGGCAGAAAGCCAGAGTGGTGATTTCCAGGGTTGGAGGAACAGAGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAAGCCAGAGTGGTGATTTCCAGGGTTGGAGGAACAGAGAATGG  500

seq1  GGTATCTGGTTTTGTTTTGTTTTGCTGATGGAAGTGCTCTGAAATAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGGTTTTGTTTTGTTTTGCTGATGGAAGTGCTCTGAAATAGATG  550

seq1  GTGGTGGTGGTTGCACAGGATCGTAACTCTATTGAGACCCACTCAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGTTGCACAGGATCGTAACTCTATTGAGACCCACTCAGCTCT  600

seq1  GTAC-TTAACAGCTGCAGTGGTGAAAACATGACACACTCAGCAGAAG-TA  648
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTACTTTAACAGCTGCAGTGGTGAAAACATGACACACTCAGCAGAAGTTA  650

seq1  GCAAACTCAAAGTTTAATCTCCT-CCCTGCACACTTGTCTTTGTAA  693
      ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAAACTCAAAGTTTAATCTCCTCCCCTGCACACTTGTCTTTGTAA  696