BAC Information

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BAC

Clone NameB6Ng01-274N23
Chromosome19 (Build37)
Map Location 31,067,316 - 31,183,324
singlet/doubletdoublet
Overlap genePrkg1, Cstf2t
Upstream geneTrpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995
Downstream gene8430431K14Rik, 1810073H04Rik, Asah2, EG668042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274N23.bB6Ng01-274N23.g
ACCGA076060GA076061
length1,1401,169
definitionB6Ng01-274N23.b B6Ng01-274N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,182,180 - 31,183,324)(31,067,316 - 31,068,488)
sequence
gaattctttatgaggtttcccagaaaaagccatttccttctagaaactac
aagccaatgaacatttgtgatccttgctctgaaagctctgcactctgtgc
ttgtcacttccagtcatttctgcaatcggtcatcctgtcagggatcatgt
gagagaaggtgggaccagagggtcaccaagacgtgtgtctaccgtgcagc
cagatgtagtggtacaagcctgtaacctggacctggaaaggtagaggtag
aaagagcaggggttcaaggccagcttcacttacatagagaatttgaaacc
aacctggactccatgagactctcaaaaaacaaccaaccaaaacccaaaaa
caaataaacaaaaagccaccaaaggcttgcacttcccaataaaatagcaa
ctaagctcactttcctatttaaatttacatttgagttaagtggctttaca
tttgagttaagtggctttaacttagctacatgtcaatggtgcaggctcat
ggcagtcattatcaccacataggaggatttccactcacagaaagttctgc
tggaaaacactgatagaccaacaacattaaaacaaaataagagaaaacaa
caacaaaaagataaaaccaaaagtaacccttttcctgaaattatgagcat
ttcaaagcctttagttattatatcttctctagttgaaaaaattactagtg
atctgaaagaaaaaaaaagtttgtacatacatataacccccacttcattg
tttacttgaatggtcaaaaaaataggtttgcagagccaaaatgtgagagc
cagtcaacggacccatcctgaggtgcgttctgctctcattccctccctgg
caccctggcatcactggctgctgctgatggacactttccacgctgatatt
tgaatcctatgacacatactcttccccccccccaatgaagccctgttgtg
ctttacagtcaccagaaatcattagctaagatctagtgacaacacagagt
ataaatgacagcaggtgtctcattattgaagttgtcttgtttttctcctc
ttatacctgggcactgattcaggcctaatgtgattaatgatcatctcaat
aaggtgagcctccaagcattattcatctttctactaacga
gaattctctcttgtgtctctgagaaaactctgtgtgtctgagtatacttg
gtaaaatttggatgtccccacgtaaccacacatcctaagaacaggcagca
gacacatcacaaggctgaagtctgtgccttttactgaaagacaattgaga
ccgagataaaggcacaaaaatgctgcatctcaaagaggcaccaaagtctc
caaaatggaaagaaacaaaaaagtgtcctacctttttaaaaattccatgt
actcggtatgcttgatgagtcctgtcctcatcattattgtttgaaaacat
tgtcgatcgatggcccagagtttcacatttacaagagctggagaaagaaa
acaaagcaaggagggggaaattaattagagaatttcacttgtgaacgaca
ccttgtaaaagagatgagttattcatgagaggtacgaacgtgattaacct
tttacacacatttaaagctaatagcattaagctgtcccatttcatcaaaa
agccagctatgctcagtggcaaaatgtggtccctggttttctgctataat
attattacctaccaagaagtttcctattgcttttatgtccctgaccgccc
atttaaaggtacacatgaaagatagtacaggaaggaaatagtatcggcca
aaaagaaaaagaggctcccaagaaataattctccctggcaacaatcagat
tattaatgactcatattataattatattttaattataaaatgtacaaatg
aaataatttctactttgggggggattccatataacagaaataataattat
gcagcaatctctacataatgcttgtttaacaaattataacttgtgcacaa
actatgtaaaacttttattaggtatgtcggttgaattttaatctctactc
ttacatccaccatctttggcaatgtataattaatgttgaaactgaataca
gcagaatcattaagtacatgattaatagacaaatttaagaacaaatagca
gcttattgaacgcaatactgcaaattatcagtaactaatgttttaaaaaa
atgagcatattggggctagagagcacaaacagtgaaagaaccctgactgg
ctcttcaggaaccagctgaacctcagcaccgatattggcgctgaactaga
caatctggaatttccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31182180_31183324
seq2: B6Ng01-274N23.b_46_1185 (reverse)

seq1  TCGTTAGTAGAAAGGTTAAATAATTGCTTTGAAGCTCA-CTTATTTAAGG  49
      ||||||||||||| | | ||||| ||||| || ||||| |||||| |  |
seq2  TCGTTAGTAGAAA-GATGAATAA-TGCTTGGAGGCTCACCTTATTGA--G  46

seq1  ATGATCATTTAATCACATTAGGCCTGAATCAGTGCCAGGGTATAAGAGGA  99
      ||||||| ||||||||||||||||||||||||||||  ||||||||||||
seq2  ATGATCA-TTAATCACATTAGGCCTGAATCAGTGCCCAGGTATAAGAGGA  95

seq1  GAAAA--CAGACAACTTCAATTAATGAGACACCTGCTGTCATTTTATACT  147
      |||||   |||||||||||| |||||||||||||||||||| ||||||||
seq2  GAAAAACAAGACAACTTCAA-TAATGAGACACCTGCTGTCA-TTTATACT  143

seq1  CTGTGTTGTCACCTAGATCTTAGCTAATGATTTCTGGTGACTGTAAAGCA  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTCA-CTAGATCTTAGCTAATGATTTCTGGTGACTGTAAAGCA  192

seq1  CAACAGGGCTTCATTGGGGGGGGGGAAGAGTATGTGTCATAGGATTCAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGCTTCATTGGGGGGGGGGAAGAGTATGTGTCATAGGATTCAAA  242

seq1  TATCAGCGTGGAAAGTGTCCATCAGCAGCAGCCAGTGATGCCAGGGTGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCGTGGAAAGTGTCCATCAGCAGCAGCCAGTGATGCCAGGGTGCC  292

seq1  AGGGAGGGAATGAGAGCAGAACGCACCTCAGGATGGGTCCGTTGACTGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAATGAGAGCAGAACGCACCTCAGGATGGGTCCGTTGACTGGC  342

seq1  TCTCACATTTTGGCTCTGCAAACCTATTTTTTTGACCATTCAAGTAAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTTTGGCTCTGCAAACCTATTTTTTTGACCATTCAAGTAAACA  392

seq1  ATGAAGTGGGGGTTATATGTATGTACAAACTTTTTTTTTCTTTCAGATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGGGGGTTATATGTATGTACAAACTTTTTTTTTCTTTCAGATCA  442

seq1  CTAGTAATTTTTTCAACTAGAGAAGATATAATAACTAAAGGCTTTGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAATTTTTTCAACTAGAGAAGATATAATAACTAAAGGCTTTGAAAT  492

seq1  GCTCATAATTTCAGGAAAAGGGTTACTTTTGGTTTTATCTTTTTGTTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAATTTCAGGAAAAGGGTTACTTTTGGTTTTATCTTTTTGTTGTT  542

seq1  GTTTTCTCTTATTTTGTTTTAATGTTGTTGGTCTATCAGTGTTTTCCAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTATTTTGTTTTAATGTTGTTGGTCTATCAGTGTTTTCCAGC  592

seq1  AGAACTTTCTGTGAGTGGAAATCCTCCTATGTGGTGATAATGACTGCCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTGTGAGTGGAAATCCTCCTATGTGGTGATAATGACTGCCAT  642

seq1  GAGCCTGCACCATTGACATGTAGCTAAGTTAAAGCCACTTAACTCAAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCACCATTGACATGTAGCTAAGTTAAAGCCACTTAACTCAAATG  692

seq1  TAAAGCCACTTAACTCAAATGTAAATTTAAATAGGAAAGTGAGCTTAGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCACTTAACTCAAATGTAAATTTAAATAGGAAAGTGAGCTTAGTT  742

seq1  GCTATTTTATTGGGAAGTGCAAGCCTTTGGTGGCTTTTTGTTTATTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTATTGGGAAGTGCAAGCCTTTGGTGGCTTTTTGTTTATTTGTT  792

seq1  TTTGGGTTTTGGTTGGTTGTTTTTTGAGAGTCTCATGGAGTCCAGGTTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTTGGTTGGTTGTTTTTTGAGAGTCTCATGGAGTCCAGGTTGG  842

seq1  TTTCAAATTCTCTATGTAAGTGAAGCTGGCCTTGAACCCCTGCTCTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTCTCTATGTAAGTGAAGCTGGCCTTGAACCCCTGCTCTTTCT  892

seq1  ACCTCTACCTTTCCAGGTCCAGGTTACAGGCTTGTACCACTACATCTGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACCTTTCCAGGTCCAGGTTACAGGCTTGTACCACTACATCTGGC  942

seq1  TGCACGGTAGACACACGTCTTGGTGACCCTCTGGTCCCACCTTCTCTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGTAGACACACGTCTTGGTGACCCTCTGGTCCCACCTTCTCTCAC  992

seq1  ATGATCCCTGACAGGATGACCGATTGCAGAAATGACTGGAAGTGACAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCTGACAGGATGACCGATTGCAGAAATGACTGGAAGTGACAAGC  1042

seq1  ACAGAGTGCAGAGCTTTCAGAGCAAGGATCACAAATGTTCATTGGCTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGCAGAGCTTTCAGAGCAAGGATCACAAATGTTCATTGGCTTGT  1092

seq1  AGTTTCTAGAAGGAAATGGCTTTTTCTGGGAAACCTCATAAAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGAAGGAAATGGCTTTTTCTGGGAAACCTCATAAAGAATTC  1140

seq1: chr19_31067316_31068488
seq2: B6Ng01-274N23.g_65_1233

seq1  GAATTCTCTCTTGTGTCTCTGAGAAAACTCTGTGTGTCTGAGTATACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTGTGTCTCTGAGAAAACTCTGTGTGTCTGAGTATACTTG  50

seq1  GTAAAATTTGGATGTCCCCACGTAACCACACATCCTAAGAACAGGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTGGATGTCCCCACGTAACCACACATCCTAAGAACAGGCAGCA  100

seq1  GACACATCACAAGGCTGAAGTCTGTGCCTTTTACTGAAAGACAATTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCACAAGGCTGAAGTCTGTGCCTTTTACTGAAAGACAATTGAGA  150

seq1  CCGAGATAAAGGCACAAAAATGCTGCATCTCAAAGAGGCACCAAAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATAAAGGCACAAAAATGCTGCATCTCAAAGAGGCACCAAAGTCTC  200

seq1  CAAAATGGAAAGAAACAAAAAAGTGTCCTACCTTTTTAAAAATTCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAAAGAAACAAAAAAGTGTCCTACCTTTTTAAAAATTCCATGT  250

seq1  ACTCGGTATGCTTGATGAGTCCTGTCCTCATCATTATTGTTTGAAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGTATGCTTGATGAGTCCTGTCCTCATCATTATTGTTTGAAAACAT  300

seq1  TGTCGATCGATGGCCCAGAGTTTCACATTTACAAGAGCTGGAGAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGATCGATGGCCCAGAGTTTCACATTTACAAGAGCTGGAGAAAGAAA  350

seq1  ACAAAGCAAGGAGGGGGAAATTAATTAGAGAATTTCACTTGTGAACGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAGGAGGGGGAAATTAATTAGAGAATTTCACTTGTGAACGACA  400

seq1  CCTTGTAAAAGAGATGAGTTATTCATGAGAGGTACGAACGTGATTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAAAGAGATGAGTTATTCATGAGAGGTACGAACGTGATTAACCT  450

seq1  TTTACACACATTTAAAGCTAATAGCATTAAGCTGTCCCATTTCATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACACATTTAAAGCTAATAGCATTAAGCTGTCCCATTTCATCAAAA  500

seq1  AGCCAGCTATGCTCAGTGGCAAAATGTGGTCCCTGGTTTTCTGCTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTATGCTCAGTGGCAAAATGTGGTCCCTGGTTTTCTGCTATAAT  550

seq1  ATTATTACCTACCAAGAAGTTTCCTATTGCTTTTATGTCCCTGACCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACCTACCAAGAAGTTTCCTATTGCTTTTATGTCCCTGACCGCCC  600

seq1  ATTTAAAGGTACACATGAAAGATAGTACAGGAAGGAAATAGTATCGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGTACACATGAAAGATAGTACAGGAAGGAAATAGTATCGGCCA  650

seq1  AAAAGAAAAAGAGGCTCCCAAGAAATAATTCTCCCTGGCAACAATCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAGGCTCCCAAGAAATAATTCTCCCTGGCAACAATCAGAT  700

seq1  TATTAATGACTCATATTATAATTATATTTTAATTATAAAATGTACAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGACTCATATTATAATTATATTTTAATTATAAAATGTACAAATG  750

seq1  AAATAATTTCTACTTT-GGGGGGATTCCATATAACAGAAATAATAATTAT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATAATTTCTACTTTGGGGGGGATTCCATATAACAGAAATAATAATTAT  800

seq1  GCAGCAATCTCTACATAATGCTTGTTTAACAAATTATAACTTGTGCACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATCTCTACATAATGCTTGTTTAACAAATTATAACTTGTGCACAA  850

seq1  ACTATGTAAAACTTTTATTAGGTATGTCGGTTGAATTTTAATCTCTACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAAAACTTTTATTAGGTATGTCGGTTGAATTTTAATCTCTACTC  900

seq1  TTACATCCACCATCTTTGGCAATGTATAATTAAATGTTGAAACTGAATAC  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTACATCCACCATCTTTGGCAATGTATAATT-AATGTTGAAACTGAATAC  949

seq1  AGCAGAATCATTAAGTACATGATTAATAGACAAATTTAAGAACAAAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCAGAATCATTAAGTACATGATTAATAGACAAATTTAAGAAC-AAATAG  998

seq1  CAGGGCTTATTGAACGCAATACTGCAAATTATCAAGGTAAACTAATGTTT  1049
      ||  ||||||||||||||||||||||||||||||  || |||||||||||
seq2  CA--GCTTATTGAACGCAATACTGCAAATTATCA--GT-AACTAATGTTT  1043

seq1  T-AAAAAATGAGCATATTGGGGGCTAGAGAGCAC-AACAGTG-AAGAACC  1096
      | |||||||||||||||| ||||||||||||||| ||||||| |||||||
seq2  TAAAAAAATGAGCATATT-GGGGCTAGAGAGCACAAACAGTGAAAGAACC  1092

seq1  CTGACT-GCTCTTCCAGGGGACCCAGGTTTGAGCCTCAGCACCCATATGG  1145
      |||||| |||||||    ||| ||||   ||| |||||||||| |||| |
seq2  CTGACTGGCTCTTC---AGGAACCAG--CTGAACCTCAGCACCGATATTG  1137

seq1  CCGCTG-ACTAG--CATCTGGAA-TTCCAGTT  1173
       ||||| |||||   |||||||| ||||||||
seq2  GCGCTGAACTAGACAATCTGGAATTTCCAGTT  1169