BAC Information

Click to search

BAC

Clone NameB6Ng01-275J17
Chromosome19 (Build37)
Map Location 42,643,500 - 42,789,672
singlet/doubletdoublet
Overlap geneD19Ertd386e, Loxl4
Upstream geneAI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1
Downstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275J17.bB6Ng01-275J17.g
ACCGA076601GA076602
length1,1821,155
definitionB6Ng01-275J17.b B6Ng01-275J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,788,502 - 42,789,672)(42,643,500 - 42,644,662)
sequence
gaattccttctggcaaagagcccagtatcacttgcccctggtgcctaaca
cggagacctgtctgcatgcctgggcttagtgatgcttcgcctctcttcta
actcacatgtcctgggcacctttgtccaaatcattccatttttgtcttgt
gaatttaaggtctgaattgcattctgttgcaagccaaactgaagaaacct
ttgccatcctcggagaacactctcaggataagaaagtgaacatctcatga
tgaccagtgtggggcaggagcagcttgcaaggtgggatgcagtgaccagt
gtcacgcaggtgatggatcctaaccaggtgtcaacgaaatgtttccctaa
ccacacagggtaaggattttcaccagaccttgatgagaagggattggaaa
ttaatatcaggattccactgtgtgtctgtagctcatgatatattattatg
tcaggtttacagtaaactgtatacaattctcaccccataaagcaggatca
gcctcagacaagtctgccattgtctttagaagccccgtggcaaaagcttc
attggatgtcattataattaaaatctatactggaacttctcctaagtaac
ttggggaaatgattcttgcttctcaagtttaggggcaggtgaaataaaaa
ccctcccaagaatgcagttgtaatcatctttggtcttgactagggactct
acatattgtggcgatgtcatgggcttgtctacacaattgctcgttccgta
catgactgagagccaggggtgtactgcaccaggtgccaggaatatgacag
aaaataattcccataatcagaagaggactcttagacacgagtgggaccag
gacttcaaaaggagagtgtctagaacagtcactaaaagacatagaggagg
aaaaccacgagaaatcagtaagaagattgattaagaccaagtctgtatcg
ctacagatcagtcccctggcttcggtattaaacatttagaggaaagaggc
aggaggcctggactttctggggtgctctctagggcaaacatagtgtaaat
agtggagggagcaagaggacttgggagggtcacgtgggaaactagaaggg
tagtggctctaggtgtgtgcagaatggcggcgaaagtgggcctaaggtga
gccgggcaggaacctcacggtctctctcggga
gaattcctgagtgatgtacaagccattaacacattctgatctgattcaaa
actgaagaaaagaaaacagctctgagtctgtattgtcagcataagggcga
ctttctcatttgagattcttttctgaagcatcagattcctggtgttctca
gttctgtgcttgagtttactttgttcagcaaactctgtatgatgcttatg
tgagctgtggttggggcagatggagatgtgatagtgacctgactcacagt
gtttgttccattcagttcattgtgtgttcaaggacactggcagggggaga
ggcgagggttggcaaaaaatcaacttctttgcccttgtcagaaataaaca
gacagcagcaacatctctaaaattaaagatccatttatgtggaaatctgg
ttaaagacaaagtatacttttaggaacatttgattttgcatacacttggg
ttttacttaattttataatttatatcaaaaacactggtgagttattctgt
tgctaagtgactagctataggccagactgctgaaatggtattggatagtg
taactatattcaaatgtaggattgtgttttgttgtggcaactctgaagtg
tgggaagatggagatttgcatgagaccgggaatgagagtgctaatgagta
gtcatatacagatctttgtatagattgcccagaggctgagatgattaagg
aaaaaccaaagtgatgccagggattctgggacccagataaaacataaaac
taaatagctattatactgctcgcctggattaaaatgagctttcttcttaa
agcagtgggtctgagtctgatgtccaatttccggtgtacatgtttgttgc
tttgttgctgagagggatagatgggcaagggtagtacctctcaaaagcag
aaacaagagaactcgtgttgtgatagaccagccttggatatggtataaga
ctctagaataactcggagtagcataaaagaaaaaattgttttgggtctag
agaattcagagaaaattgacaatgatgtcattctgttgtctttgcagttt
tagatttctggtatagctgttggctcagtgactatatggcagtacttgag
ttagctcaggactagtggaatcttagcatcctgtcctgaactgaacattt
tctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42788502_42789672
seq2: B6Ng01-275J17.b_48_1229 (reverse)

seq1  TCCCG---GAGACCGTGA-GTTCCTGCCCCGCTCACAT--GACCCAC-TT  43
      |||||   |||||||||| |||||||||| |||||| |  | ||||| ||
seq2  TCCCGAGAGAGACCGTGAGGTTCCTGCCCGGCTCACCTTAGGCCCACTTT  50

seq1  CG-CGCCA-TCTGCACACA-CTAGAGGCCACTTCCCTCTAATTTTCCAAC  90
      || ||||| |||||||||| ||||| |||||| ||||   | ||||| ||
seq2  CGCCGCCATTCTGCACACACCTAGA-GCCACTACCCTTCTAGTTTCCCAC  99

seq1  GTGACCCT-CCAAGTCCTCTTGCTCC--TCACTATTTACACTATGTTTGC  137
      |||||||| |||||||||||||||||   |||||||||||||||||||||
seq2  GTGACCCTCCCAAGTCCTCTTGCTCCCTCCACTATTTACACTATGTTTGC  149

seq1  CCTAGGAGAGCAACCCAGAAAGTCCAGGCCTCCTGCCTCTTTCCTCTAAA  187
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTA-GAGAGCACCCCAGAAAGTCCAGGCCTCCTGCCTCTTTCCTCTAAA  198

seq1  TGTTTAATACCGAAGCCAGGGGACTGATCTGTAGCGATACAGACTTGGTC  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATACCGAAGCCAGGGGACTGATCTGTAGCGATACAGACTTGGTC  248

seq1  TTAATCAATCTTCTTACTGATTTCTCGTGGTTTTCCTCCTCTATGTCTTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAATCTTCTTACTGATTTCTCGTGGTTTTCCTCCTCTATGTCTTT  298

seq1  TAGTGACTGTTCTAGACACTCTCCTTTTGAAGTCCTGGTCCCACTCGTGT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTGTTCTAGACACTCTCCTTTTGAAGTCCTGGTCCCACTCGTGT  348

seq1  CTAAGAGTCCTCTTCTGATTATGGGAATTATTTTCTGTCATATTCCTGGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTCCTCTTCTGATTATGGGAATTATTTTCTGTCATATTCCTGGC  398

seq1  ACCTGGTGCAGTACACCCCTGGCTCTCAGTCATGTACGGAACGAGCAATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGCAGTACACCCCTGGCTCTCAGTCATGTACGGAACGAGCAATT  448

seq1  GTGTAGACAAGCCCATGACATCGCCACAATATGTAGAGTCCCTAGTCAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACAAGCCCATGACATCGCCACAATATGTAGAGTCCCTAGTCAAG  498

seq1  ACCAAAGATGATTACAACTGCATTCTTGGGAGGGTTTTTATTTCACCTGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGATGATTACAACTGCATTCTTGGGAGGGTTTTTATTTCACCTGC  548

seq1  CCCTAAACTTGAGAAGCAAGAATCATTTCCCCAAGTTACTTAGGAGAAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACTTGAGAAGCAAGAATCATTTCCCCAAGTTACTTAGGAGAAGT  598

seq1  TCCAGTATAGATTTTAATTATAATGACATCCAATGAAGCTTTTGCCACGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATAGATTTTAATTATAATGACATCCAATGAAGCTTTTGCCACGG  648

seq1  GGCTTCTAAAGACAATGGCAGACTTGTCTGAGGCTGATCCTGCTTTATGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTAAAGACAATGGCAGACTTGTCTGAGGCTGATCCTGCTTTATGG  698

seq1  GGTGAGAATTGTATACAGTTTACTGTAAACCTGACATAATAATATATCAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAATTGTATACAGTTTACTGTAAACCTGACATAATAATATATCAT  748

seq1  GAGCTACAGACACACAGTGGAATCCTGATATTAATTTCCAATCCCTTCTC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACAGACACACAGTGGAATCCTGATATTAATTTCCAATCCCTTCTC  798

seq1  ATCAAGGTCTGGTGAAAATCCTTACCCTGTGTGGTTAGGGAAACATTTCG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTCTGGTGAAAATCCTTACCCTGTGTGGTTAGGGAAACATTTCG  848

seq1  TTGACACCTGGTTAGGATCCATCACCTGCGTGACACTGGTCACTGCATCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCTGGTTAGGATCCATCACCTGCGTGACACTGGTCACTGCATCC  898

seq1  CACCTTGCAAGCTGCTCCTGCCCCACACTGGTCATCATGAGATGTTCACT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCAAGCTGCTCCTGCCCCACACTGGTCATCATGAGATGTTCACT  948

seq1  TTCTTATCCTGAGAGTGTTCTCCGAGGATGGCAAAGGTTTCTTCAGTTTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCCTGAGAGTGTTCTCCGAGGATGGCAAAGGTTTCTTCAGTTTG  998

seq1  GCTTGCAACAGAATGCAATTCAGACCTTAAATTCACAAGACAAAAATGGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAACAGAATGCAATTCAGACCTTAAATTCACAAGACAAAAATGGA  1048

seq1  ATGATTTGGACAAAGGTGCCCAGGACATGTGAGTTAGAAGAGAGGCGAAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGACAAAGGTGCCCAGGACATGTGAGTTAGAAGAGAGGCGAAG  1098

seq1  CATCACTAAGCCCAGGCATGCAGACAGGTCTCCGTGTTAGGCACCAGGGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAAGCCCAGGCATGCAGACAGGTCTCCGTGTTAGGCACCAGGGG  1148

seq1  CAAGTGATACTGGGCTCTTTGCCAGAAGGAATTC  1171
      ||||||||||||||||||||||||||||||||||
seq2  CAAGTGATACTGGGCTCTTTGCCAGAAGGAATTC  1182

seq1: chr19_42643500_42644662
seq2: B6Ng01-275J17.g_62_1216

seq1  GAATTCCTGAGTGATGTACAAGCCATTAACACATTCTGATCTGATTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTGATGTACAAGCCATTAACACATTCTGATCTGATTCAAA  50

seq1  ACTGAAGAAAAGAAAACAGCTCTGAGTCTGTATTGTCAGCATAAGGGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAAAGAAAACAGCTCTGAGTCTGTATTGTCAGCATAAGGGCGA  100

seq1  CTTTCTCATTTGAGATTCTTTTCTGAAGCATCAGATTCCTGGTGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATTTGAGATTCTTTTCTGAAGCATCAGATTCCTGGTGTTCTCA  150

seq1  GTTCTGTGCTTGAGTTTACTTTGTTCAGCAAACTCTGTATGATGCTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGCTTGAGTTTACTTTGTTCAGCAAACTCTGTATGATGCTTATG  200

seq1  TGAGCTGTGGTTGGGGCAGATGGAGATGTGATAGTGACCTGACTCACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGGTTGGGGCAGATGGAGATGTGATAGTGACCTGACTCACAGT  250

seq1  GTTTGTTCCATTCAGTTCATTGTGTGTTCAAGGACACTGGCAGGGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCCATTCAGTTCATTGTGTGTTCAAGGACACTGGCAGGGGGAGA  300

seq1  GGCGAGGGTTGGCAAAAAATCAACTTCTTTGCCCTTGTCAGAAATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGGTTGGCAAAAAATCAACTTCTTTGCCCTTGTCAGAAATAAACA  350

seq1  GACAGCAGCAACATCTCTAAAATTAAAGATCCATTTATGTGGAAATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCAACATCTCTAAAATTAAAGATCCATTTATGTGGAAATCTGG  400

seq1  TTAAAGACAAAGTATACTTTTAGGAACATTTGATTTTGCATACACTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAAAGTATACTTTTAGGAACATTTGATTTTGCATACACTTGGG  450

seq1  TTTTACTTAATTTTATAATTTATATCAAAAACACTGGTGAGTTATTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAATTTTATAATTTATATCAAAAACACTGGTGAGTTATTCTGT  500

seq1  TGCTAAGTGACTAGCTATAGGCCAGACTGCTGAAATGGTATTGGATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTGACTAGCTATAGGCCAGACTGCTGAAATGGTATTGGATAGTG  550

seq1  TAACTATATTCAAATGTAGGATTGTGTTTTGTTGTGGCAACTCTGAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATATTCAAATGTAGGATTGTGTTTTGTTGTGGCAACTCTGAAGTG  600

seq1  TGGGAAGATGGAGATTTGCATGAGACCGGGAATGAGAGTGCTAATGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATGGAGATTTGCATGAGACCGGGAATGAGAGTGCTAATGAGTA  650

seq1  GTCATATACAGATCTTTGTATAGATTGCCCAGAGGCTGAGATGATTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACAGATCTTTGTATAGATTGCCCAGAGGCTGAGATGATTAAGG  700

seq1  AAAAACCAAAGTGATGCCAGGGATTCTGGGACCCAGATAAAACATAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAGTGATGCCAGGGATTCTGGGACCCAGATAAAACATAAAAC  750

seq1  TAAATAGCTATTATACTGCTCGCCTGGATTAAAATGAGCTTTCTTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTATTATACTGCTCGCCTGGATTAAAATGAGCTTTCTTCTTAA  800

seq1  AGCAGTGGGTCTGAGTCTGATGTCCAATTTCCGGTGTACATGTTTGTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGTCTGAGTCTGATGTCCAATTTCCGGTGTACATGTTTGTTGC  850

seq1  TTTGTTGCTGAGAGGGATAGATGGGCAAGGGTAGTACC-CTCAAAAGCAG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTTGCTGAGAGGGATAGATGGGCAAGGGTAGTACCTCTCAAAAGCAG  900

seq1  AAACAAGAGAACTCGTGTTGTGATAGACCAGCCTTGGATATGGTATAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGAACTCGTGTTGTGATAGACCAGCCTTGGATATGGTATAAGA  950

seq1  CTCTAG-ATAACTCGGAGTAGCATAAAGAAAAAAATTGTTTTGGGTTCTA  998
      |||||| ||||||||||||||||||||  |||||||||||||||| ||||
seq2  CTCTAGAATAACTCGGAGTAGCATAAAAGAAAAAATTGTTTTGGG-TCTA  999

seq1  GAGAAATTCAGAAGAAAAATGACAATGGATGTCAATTCTGTTGTCTTTGC  1048
      ||| ||||||| |||||| ||||||| |||||| ||||||||||||||||
seq2  GAG-AATTCAG-AGAAAATTGACAAT-GATGTC-ATTCTGTTGTCTTTGC  1045

seq1  AAGTTTTAGATTTCTTGTATAGCTGTTG--TCAGTGACTATTATTGCAGT  1096
       |||||||||||||| ||||||||||||  |||||||||| ||| |||||
seq2  -AGTTTTAGATTTCTGGTATAGCTGTTGGCTCAGTGACTA-TATGGCAGT  1093

seq1  ACTTGAGTTAAGCTCCCAGGACTAGTTTGAGACCTTTAGCATTCCTGTCC  1146
      ||||||||| ||||  ||||||||||    ||   |||||| ||||||||
seq2  ACTTGAGTT-AGCT--CAGGACTAGT---GGAATCTTAGCA-TCCTGTCC  1136

seq1  TG-ACTTAGC-TTTTCTAT  1163
      || ||| | | ||||||||
seq2  TGAACTGAACATTTTCTAT  1155