BAC Information

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BAC

Clone NameB6Ng01-276N05
Chromosome19 (Build37)
Map Location 24,340,498 - 24,528,073
singlet/doubletdoublet
Overlap geneFxn, LOC667743, Pip5k1b, LOC100042457
Upstream geneSmc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N05.bB6Ng01-276N05.g
ACCGA077507GA077508
length1,1351,103
definitionB6Ng01-276N05.b B6Ng01-276N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,340,498 - 24,341,625)(24,527,006 - 24,528,073)
sequence
gaattccacactgcttctagctgagatttcccacggctccttcaaaatgt
ctccttcagtactgctgttgagcctcagggaggttagtgtgaaggctccc
tgtgggcatcgctaggctgttcccagaccactgaggcagcagctgtatac
ttatcagtaagtccttagttctgagacagggtctgactgcagtgcatcct
gctgctccttcaactgcaggcattgccacggggcaggcaggcatgaggct
gggggccctggggctgctgataaaaatcaccgtcccgtcccgttgtgaca
gagtcagagcccagctctgccagcagagttacagagaccttcaaagtagg
ccaggagttaaagtttaacttactttgaggacaaagtgcaagttttctca
gatactacaatataaaaaattcctccctctttctccttcctacctttcca
ttttggaaactgaatccagggcttatagattactggataagcactctccc
actgagatatgccctcagccttcaaagtagctttttttttttttaaagat
ctatttatttattgtatgtatgtgagtacactatcgctctcttcagacag
accagaagagggcatcagatcccatcagagatggttgtgagccactaagt
agctgctgggaaatgaactcaggatttctagagcaaactgagccatctct
ctagttccctcaaagtagctttttaatgaatgaatgaatgaatgaatgat
tattatttttaatcgcaggtatgtgccactgtacctaacaaaaagtggct
tatggatagccctggctatcctggaacgcactatatggaccagatttgct
tattttgcttttgctatagggtcttacatgatagctcagactagcctttg
aactggctatgtagccaaggcaggccttgaattcttgcctctacttcttg
agtgctggactatagctatggtaagactgtgtctggcaaaagtatcattt
tcaaggcaagccagttgcttttctcttctggggaaatgatatacttgcag
aaaaaccagtctggtctaggctctgaacagttctttcttgctcaagtact
agttcacattcctgaatggctgaggttgcatagca
gaattctttcggcataacctttgttgggaaaatgaattacaagtggttcg
ttttatgccgagccttttgttatcaccatttaaagccatcctgtttgttc
actttgtgagagctattctgcgggctgatgaatgtgttttatgagagaat
agaagagcctgcaatttgttttgattgatcttcatttggattcaaagaga
gcaggtgctgccgtttggaattggttttggcagtggctcggttatataaa
tattagaaatacagaccaaagcttcttttaaattatctttctccataatg
taggagagctttacgttgagtattaaaccctgtggttctatttttacaac
ttctcatataaacatgttacataccatatgtttgaacatatgtatgtata
tgtgggctccattgtgcagatgtatagcatgcagattttccatacttctt
taaaagtgtatgcagatattattctctctcttttttattattcacttaaa
aaatctaagaatgtgatttctgaatataacaagacgctttattttttttc
ttctagtctgaaaagtgtagacagttctagctttagaaattatgtcaagg
gttgttttcagttgagtgtggtttttgttgctaatcttttaagccttcga
gagtgacccattggagttttaaatctttttttccctgcttttctgcatct
ttgttattgttgtttgttcccaaaagccccatttgagggctgctgtgcct
ctcctcaaacacatggggcagattatggaagtactccctttccagctaga
ctaatgtacttgcccacatagctgctctcatctttgtccctctgcaaacc
gccttttgttcaatgttcttgtgctccctcagataagcaaatggaacgtt
ctgtgacacccccccccccctagactggactgacccagtttctccttgca
aaaattccagagcagagctcatgggcttcactggtgttcttgagctggtc
tgcatttcttctctgccttccttccttcttcttcattccattcaccactg
ttggttgtatttcccttagtgaattaaagcccctgtctttttgtccttta
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24340498_24341625
seq2: B6Ng01-276N05.b_47_1181

seq1  GAATTCCACACTGCTTCTAGCTGAGATTTCCCACGGCTCCTTCAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTGCTTCTAGCTGAGATTTCCCACGGCTCCTTCAAAATGT  50

seq1  CTCCTTCAGTACTGCTGTTGAGCCTCAGGGAGGTTAGTGTGAAGGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAGTACTGCTGTTGAGCCTCAGGGAGGTTAGTGTGAAGGCTCCC  100

seq1  TGTGGGCATCGCTAGGCTGTTCCCAGACCACTGAGGCAGCAGCTGTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATCGCTAGGCTGTTCCCAGACCACTGAGGCAGCAGCTGTATAC  150

seq1  TTATCAGTAAGTCCTTAGTTCTGAGACAGGGTCTGACTGCAGTGCATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTAAGTCCTTAGTTCTGAGACAGGGTCTGACTGCAGTGCATCCT  200

seq1  GCTGCTCCTTCAACTGCAGGCATTGCCACGGGGCAGGCAGGCATGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCTTCAACTGCAGGCATTGCCACGGGGCAGGCAGGCATGAGGCT  250

seq1  GGGGGCCCTGGGGCTGCTGATAAAAATCACCGTCCCGTCCCGTTGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCTGGGGCTGCTGATAAAAATCACCGTCCCGTCCCGTTGTGACA  300

seq1  GAGTCAGAGCCCAGCTCTGCCAGCAGAGTTACAGAGACCTTCAAAGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGCCCAGCTCTGCCAGCAGAGTTACAGAGACCTTCAAAGTAGG  350

seq1  CCAGGAGTTAAAGTTTAACTTACTTTGAGGACAAAGTGCAAGTTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTTAAAGTTTAACTTACTTTGAGGACAAAGTGCAAGTTTTCTCA  400

seq1  GATACTACAATATAAAAAATTCCTCCCTCTTTCTCCTTCCTACCTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACAATATAAAAAATTCCTCCCTCTTTCTCCTTCCTACCTTTCCA  450

seq1  TTTTGGAAACTGAATCCAGGGCTTATAGATTACTGGATAAGCACTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAACTGAATCCAGGGCTTATAGATTACTGGATAAGCACTCTCCC  500

seq1  ACTGAGATATGCCCTCAGCCTTCAAAGTAGCTTTTTTTTTTTTTAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATATGCCCTCAGCCTTCAAAGTAGCTTTTTTTTTTTTTAAAGAT  550

seq1  CTATTTATTTATTGTATGTATGTGAGTACACTATCGCTCTCTTCAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTTATTGTATGTATGTGAGTACACTATCGCTCTCTTCAGACAG  600

seq1  ACCAGAAGAGGGCATCAGATCCCATCAGAGATGGTTGTGAGCCACTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGAGGGCATCAGATCCCATCAGAGATGGTTGTGAGCCACTAAGT  650

seq1  AGCTGCTGGGAAATGAACTCAGGATTTCTAGAGCAAACTGAGCCATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGGGAAATGAACTCAGGATTTCTAGAGCAAACTGAGCCATCTCT  700

seq1  CTAGTTCCCTCAAAGTAGCTTTTTAATGAATGAATGAATGAATGAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCCTCAAAGTAGCTTTTTAATGAATGAATGAATGAATGAATGAT  750

seq1  TATTATTTTTAATCGCAGGTATGTGCCACTGTACCTAAC-AAAAGTGGCT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTATTTTTAATCGCAGGTATGTGCCACTGTACCTAACAAAAAGTGGCT  800

seq1  TATGGATAGCCCTGGCTATCCTGGAACGCACTATATGGACCAGATTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATAGCCCTGGCTATCCTGGAACGCACTATATGGACCAGATTTGCT  850

seq1  TA-TTTGCTTTTGCTATAGGGTCTTACATGATAGCTCAGACTAGCCTTTG  898
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTTTGCTATAGGGTCTTACATGATAGCTCAGACTAGCCTTTG  900

seq1  AACTGGCTATGTAGCCAAGGCAGGCCTTGAATTCTTGCCTCTACTTCTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTATGTAGCCAAGGCAGGCCTTGAATTCTTGCCTCTACTTCTTG  950

seq1  AGTGCTGGGACTATAGCTATGTTAAGACTGTGTCTGGCAAAAGTATCATT  998
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGCT-GGACTATAGCTATGGTAAGACTGTGTCTGGCAAAAGTATCATT  999

seq1  TTCAAAGGCAAGCCAGTGGTTTTTCTCTTCTGGGG-AATGATATAC-TGG  1046
      ||| ||||||||||||| | ||||||||||||||| |||||||||| || 
seq2  TTC-AAGGCAAGCCAGTTGCTTTTCTCTTCTGGGGAAATGATATACTTGC  1048

seq1  AG-AAAACCAGTCTGGGCCAGGCTCTGAACAGTTCCTTC-TGCTTCAGGT  1094
      || ||||||||||||| | |||||||||||||||| ||| ||||  ||  
seq2  AGAAAAACCAGTCTGGTCTAGGCTCTGAACAGTTCTTTCTTGCTCAAGTA  1098

seq1  CTTGTCAACA-TCCTG-ATGCCTGA-GTTGCATAGCA  1128
      || ||  ||| ||||| ||| |||| |||||||||||
seq2  CTAGTTCACATTCCTGAATGGCTGAGGTTGCATAGCA  1135

seq1: chr19_24527006_24528073
seq2: B6Ng01-276N05.g_67_1169 (reverse)

seq1  CCAT-AAGGAC--AAAGACAGGGCC--TAATTCACTA--GGAAAT-CA--  40
      |||| ||||||  |||||||||| |  ||||||||||  |||||| ||  
seq2  CCATAAAGGACAAAAAGACAGGGGCTTTAATTCACTAAGGGAAATACAAC  50

seq1  CCACAGTG------GGATGGAAGGAGAGAGGGAGGGAGGGAGAG-AGGAA  83
      | ||||||      |||  |||| ||| ||| ||| ||| |||| || ||
seq2  CAACAGTGGTGAATGGAATGAAGAAGA-AGGAAGGAAGGCAGAGAAGAAA  99

seq1  TGCAGA-CAGCTCA--GACA-CAGTGA--GCCATGAGCTCTGCTCTGG-A  126
      |||||| |||||||   ||| ||||||   |||||||||||||||||| |
seq2  TGCAGACCAGCTCAAGAACACCAGTGAAGCCCATGAGCTCTGCTCTGGAA  149

seq1  TTTTTGC-AGGAGGAACTGGGTCAGTCCAGTCTA--GGGGGGGGGGTGTC  173
      ||||||| ||||| ||||||||||||||||||||  ||||||||||||||
seq2  TTTTTGCAAGGAGAAACTGGGTCAGTCCAGTCTAGGGGGGGGGGGGTGTC  199

seq1  ACAGAACGTTCCATTTGCTTATCTGA-GGAGCACA--GACATTGAAC-AA  219
      |||||||||||||||||||||||||| ||||||||   ||||||||| ||
seq2  ACAGAACGTTCCATTTGCTTATCTGAGGGAGCACAAGAACATTGAACAAA  249

seq1  AGGCGGTTTGCAGA-GGAC-AAGATGAGAGCAGCTATGTGGGCAAGTACA  267
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  AGGCGGTTTGCAGAGGGACAAAGATGAGAGCAGCTATGTGGGCAAGTACA  299

seq1  -TAGTCTAGCTGGAAAGGGAGTACTTCCATAATCTGCCCCATGTGTTTGA  316
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAGCTGGAAAGGGAGTACTTCCATAATCTGCCCCATGTGTTTGA  349

seq1  GGAGAGGCACAGCAGCCCTC-AATGGGGCTTTTGGGAACAAACAACAATA  365
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAGAGGCACAGCAGCCCTCAAATGGGGCTTTTGGGAACAAACAACAATA  399

seq1  ACAAAGATGCAGAAAAGCAGGGAAAAAAAGATTTAAAACTCCAATGGGTC  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGCAGAAAAGCAGGGAAAAAAAGATTTAAAACTCCAATGGGTC  449

seq1  ACTCTCGAAGGCTT-AAAGATTAGCAACAAAAACCACACTCAACTGAAAA  464
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCTCGAAGGCTTAAAAGATTAGCAACAAAAACCACACTCAACTGAAAA  499

seq1  CAACCCTTGACATAATTTCTAAAGCTAGAACTGTCTACACTTTTCAGACT  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTTGACATAATTTCTAAAGCTAGAACTGTCTACACTTTTCAGACT  549

seq1  AGAAGAAAAAAAATAAAGCGTCTTGTTATATTCAGAAATCACATTCTTAG  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAAATAAAGCGTCTTGTTATATTCAGAAATCACATTCTTAG  599

seq1  ATTTTTTAAGTGAATAATAAAAAAGAGAGAGAATAATATCTGCATACACT  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAGTGAATAATAAAAAAGAGAGAGAATAATATCTGCATACACT  649

seq1  TTTAAAGAAGTATGGAAAATCTGCATGCTATACATCTGCACAATGGAGCC  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGTATGGAAAATCTGCATGCTATACATCTGCACAATGGAGCC  699

seq1  CACATATACATACATATGTTCAAACATATGGTATGTAACATGTTTATATG  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACATACATATGTTCAAACATATGGTATGTAACATGTTTATATG  749

seq1  AGAAGTTGTAAAAATAGAACCACAGGGTTTAATACTCAACGTAAAGCTCT  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGTAAAAATAGAACCACAGGGTTTAATACTCAACGTAAAGCTCT  799

seq1  CCTACATTATGGAGAAAGATAATTTAAAAGAAGCTTTGGTCTGTATTTCT  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTATGGAGAAAGATAATTTAAAAGAAGCTTTGGTCTGTATTTCT  849

seq1  AATATTTATATAACCGAGCCACTGCCAAAACCAATTCCAAACGGCAGCAC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATATAACCGAGCCACTGCCAAAACCAATTCCAAACGGCAGCAC  899

seq1  CTGCTCTCTTTGAATCCAAATGAAGATCAATCAAAACAAATTGCAGGCTC  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTTGAATCCAAATGAAGATCAATCAAAACAAATTGCAGGCTC  949

seq1  TTCTATTCTCTCATAAAACACATTCATCAGCCCGCAGAATAGCTCTCACA  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTCTCATAAAACACATTCATCAGCCCGCAGAATAGCTCTCACA  999

seq1  AAGTGAACAAACAGGATGGCTTTAAATGGTGATAACAAAAGGCTCGGCAT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACAAACAGGATGGCTTTAAATGGTGATAACAAAAGGCTCGGCAT  1049

seq1  AAAACGAACCACTTGTAATTCATTTTCCCAACAAAGGTTATGCCGAAAGA  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAACCACTTGTAATTCATTTTCCCAACAAAGGTTATGCCGAAAGA  1099

seq1  ATTC  1068
      ||||
seq2  ATTC  1103