BAC Information

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BAC

Clone NameB6Ng01-277J22
Chromosome19 (Build37)
Map Location 10,653,201 - 10,654,304
singlet/doubletsinglet
Overlap geneCybasc3
Upstream geneStxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138
Downstream geneDak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277J22.bB6Ng01-277J22.g
ACCGA078092GA078093
length1,120546
definitionB6Ng01-277J22.b B6Ng01-277J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacgccactggctacttgagaggctgaatcgggtgagaccagctc
ccccaacaaacaaaaccctgaagctcattgtccccatgcctgcccaggcc
tctcagtagccttgattacatctcatgacatgccagatagtcatccaacc
tgcagcagatgctgggctctcgtgggtgactctagttagtagcaatctct
gagaaagagctgagggctaggaggtttatcacccagcctcagagctgcct
ccttgattcatgcaagagcaaaaaaggtttgggattaccaagtgtccact
gcctaacacaacctccactcttccagtcacctgacagcgttggcttctgc
agtttatttttttacaaaaggaaaaaggagacaatggtccctttgcccat
agtccactctcagcccttaagagtgagttctctacaatgttctctctgaa
cactgtctacttcatttctggatcgtgccccaccttcaccttgtaataaa
ctctacatattttctatcttgaagcttaaaactgggagtggtggtacacg
cctataatcccagcattccagaggtaaaaagctgaagaatcagaagttca
aggccaacctctgctacatgtttgtagttgagcataagcccaggctaaat
aagaccctagccaaaaaataaaaaataaaaataaaggcaggggtgtgggg
gtggaaggcttggccattaagaagttaagagagtacatactggtcttgca
gcacaccacagctgagttcccagcacctacatcagctcacagctccaaag
ggaccaaaatacctacttctggcctttcacaggaacctgcatacacataa
cattcacatacagacacattttgatgaaaaggaaaggcaaaacatttcca
aaccaaccccgcatcactccagttacaagtcctgggactagcactttgcc
acagggcttagaacagatggggacaacttttctgaacagaaggccggata
agttagttacattggctgtctacagtttcaacaaattaagcctctctttt
cctaaaatagcaaagcagggaaagaacgcaggcaaaggctgaaacctacg
ctcctcactttgcactgaga
ttcagggcctcatcgcttctgaagcctcttcttatgatggagaattcctc
tggccttgcaaacacttcaccaccatccagactctctagaagttgaaaac
actggcaactcattttcccagtgtgctggctagtttatgtcaacttgaca
caagctatagttacgtttaaaagcagtaacctcaaatgagaaaatgcccc
caccagaatggcctgtgagaaagcctgtggtgcattttcttgattgatga
tgtaggagaacccaggtcactgtgagtgctggttgtcataagaaagcagg
tttagcaagccatgagggacaagccagtaagaaacactcctccatagccc
ctgcttcaattcctacctcctccaggtccctgccttgagttccttcccta
acttcactggatgatgaactacaagctggaagaagaaggaagaagggggg
aaggaagaggaggaggaggaggaggacctttccggaccatatgaatagga
agataaccaacatttttgatgatgatatttctgatatgtatgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10653201_10654304
seq2: B6Ng01-277J22.b_48_1167 (reverse)

seq1  TCTCAGTGC-AAGTGA-GAGCGTA-GTCTCAGCCTTTGCCTGCGTTCTTT  47
      ||||||||| |||||| ||||||| || ||||||||||||||||||| ||
seq2  TCTCAGTGCAAAGTGAGGAGCGTAGGTTTCAGCCTTTGCCTGCGTTC-TT  49

seq1  TCCTTGCTTTTGCTATTTTAGGAAAAGAGAGGGCTTATTTGT--GAACTG  95
      ||| ||| ||||||||||||||||||||||||  | ||||||   |||||
seq2  TCCCTGC-TTTGCTATTTTAGGAAAAGAGAGGCTTAATTTGTTGAAACTG  98

seq1  TAGACAG-CAATGTAACTAACTT-TCCGGCCTTCTG-TCAGAAAAG-TGT  141
      ||||||| ||||||||||||||| |||||||||||| ||||||||| |||
seq2  TAGACAGCCAATGTAACTAACTTATCCGGCCTTCTGTTCAGAAAAGTTGT  148

seq1  -CCCATCTGTTCTAAG-CCTGTGGCAAAGTGCTAGT-CCAGGACTTGTAA  188
       ||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CCCCATCTGTTCTAAGCCCTGTGGCAAAGTGCTAGTCCCAGGACTTGTAA  198

seq1  CTGGAGTGATGC-GGGTTGGTTTGG-AATGTTTTGCCTTTCCTTTTCATC  236
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CTGGAGTGATGCGGGGTTGGTTTGGAAATGTTTTGCCTTTCCTTTTCATC  248

seq1  -AAATGTGTCTGTATGTGAATGTTATGTGTATGCAGGTTCCTGTG-AAGG  284
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATGTGTCTGTATGTGAATGTTATGTGTATGCAGGTTCCTGTGAAAGG  298

seq1  CCAGAAGTAGGTA-TTTGGTCCC-TTGGAGCTGTGAGCTGATGTAGGTGC  332
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CCAGAAGTAGGTATTTTGGTCCCTTTGGAGCTGTGAGCTGATGTAGGTGC  348

seq1  TGGGAACTCAGCTGTGGTGTGCTGCAAGACCAGTATGTACTCTCTTAACT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTCAGCTGTGGTGTGCTGCAAGACCAGTATGTACTCTCTTAACT  398

seq1  TCTTAATGGCCAAGCCTTCCACCCCCACACCCCTGCCTTTATTTTTATTT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGGCCAAGCCTTCCACCCCCACACCCCTGCCTTTATTTTTATTT  448

seq1  TTTATTTTTTGGCTAGGGTCTTATTTAGCCTGGGCTTATGCTCAACTACA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGGCTAGGGTCTTATTTAGCCTGGGCTTATGCTCAACTACA  498

seq1  AACATGTAGCAGAGGTTGGCCTTGAACTTCTGATTCTTCAGCTTTTTACC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGCAGAGGTTGGCCTTGAACTTCTGATTCTTCAGCTTTTTACC  548

seq1  TCTGGAATGCTGGGATTATAGGCGTGTACCACCACTCCCAGTTTTAAGCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGCTGGGATTATAGGCGTGTACCACCACTCCCAGTTTTAAGCT  598

seq1  TCAAGATAGAAAATATGTAGAGTTTATTACAAGGTGAAGGTGGGGCACGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATAGAAAATATGTAGAGTTTATTACAAGGTGAAGGTGGGGCACGA  648

seq1  TCCAGAAATGAAGTAGACAGTGTTCAGAGAGAACATTGTAGAGAACTCAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATGAAGTAGACAGTGTTCAGAGAGAACATTGTAGAGAACTCAC  698

seq1  TCTTAAGGGCTGAGAGTGGACTATGGGCAAAGGGACCATTGTCTCCTTTT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGGCTGAGAGTGGACTATGGGCAAAGGGACCATTGTCTCCTTTT  748

seq1  TCCTTTTGTAAAAAAATAAACTGCAGAAGCCAACGCTGTCAGGTGACTGG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTAAAAAAATAAACTGCAGAAGCCAACGCTGTCAGGTGACTGG  798

seq1  AAGAGTGGAGGTTGTGTTAGGCAGTGGACACTTGGTAATCCCAAACCTTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGAGGTTGTGTTAGGCAGTGGACACTTGGTAATCCCAAACCTTT  848

seq1  TTTGCTCTTGCATGAATCAAGGAGGCAGCTCTGAGGCTGGGTGATAAACC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTTGCATGAATCAAGGAGGCAGCTCTGAGGCTGGGTGATAAACC  898

seq1  TCCTAGCCCTCAGCTCTTTCTCAGAGATTGCTACTAACTAGAGTCACCCA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCCTCAGCTCTTTCTCAGAGATTGCTACTAACTAGAGTCACCCA  948

seq1  CGAGAGCCCAGCATCTGCTGCAGGTTGGATGACTATCTGGCATGTCATGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCCCAGCATCTGCTGCAGGTTGGATGACTATCTGGCATGTCATGA  998

seq1  GATGTAATCAAGGCTACTGAGAGGCCTGGGCAGGCATGGGGACAATGAGC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATCAAGGCTACTGAGAGGCCTGGGCAGGCATGGGGACAATGAGC  1048

seq1  TTCAGGGTTTTGTTTGTTGGGGGAGCTGGTCTCACCCGATTCAGCCTCTC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTTTGTTTGTTGGGGGAGCTGGTCTCACCCGATTCAGCCTCTC  1098

seq1  AAGTAGCCAGTGGCGTGAATTC  1104
      ||||||||||||||||||||||
seq2  AAGTAGCCAGTGGCGTGAATTC  1120