BAC Information

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BAC

Clone NameB6Ng01-278F20
Chromosome19 (Build37)
Map Location 25,802,548 - 25,950,559
singlet/doubletdoublet
Overlap geneEG667806
Upstream genePgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278F20.bB6Ng01-278F20.g
ACCGA078629GA078630
length8561,085
definitionB6Ng01-278F20.b B6Ng01-278F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,949,703 - 25,950,559)(25,802,548 - 25,803,640)
sequence
gaattcagtctaaaggtaagaaagaagtatctcataggaactcaggctat
ggggctcatacaagctcatctccagagcttgacaatccaaatacattgtg
tcttacaaggcaaacaatttccataaagccccataacagaaggaggataa
tgaggagtgggaaagagtgaaatagagggatgaggggaagcaacattgtg
agacatgggggactgctgagaaagaatgtccactggacatgacaggacca
ccacgtgcttgaactcactgcagctaggattggctgtacaaaacctgcac
aagatcaagctattagacattgcagcacatgtaggtggcatatgaaactc
gtccctcactgaggggttattgacagttgatggctgtgaggagaaggaaa
gtcagtctttaggggtgtggccgctggtaaactggccatgttccagtgga
tgaacccacatgtgggtgtgtatgggctacgctaactgggcttacaatgg
agttatttaaaaataagaatggcatgaaactggtggggagatgagagatc
taggaggagttggacaggatatgagtatagtcaaagcactttgaatgctg
tgtgtatgtaaaataaatgtttaaagacataaaaaaaagttcaaataaag
ttaaatgttaaataatttggtaaatatgttcattataaataggataaagc
tttaatatctattctacctttaattttctttaaaaatcagtaagagaaac
attaaatttataaacaaaaatggaaaggaggacagaaacctatgaaaata
tagataggacattatatacattatacatatatgtgtgtgtggtgtgtgtg
gtgtgt
gaattcagtgcagatcaggatttccatcacaggttaagacgaaggctggg
aagtatttttaatttcagggctctcctctgcccaccatggcattttcatt
tttcattacgtaacctgtcctgagtgtgggcacaacggcgagtgagggac
caagggactgagtgggaggacagacgccaggccattgtgtcttcccatga
ttcatttgcataattttcagttagctcctgatttacacacaaggctcaga
tcatgactccatttcgtctgaaacattagtcagggagccagcatgttcag
gctccggcaccaggctttgccctgctcttaatccagaggcacctgccctt
tcataattctccacagctagagacatgtaaaaaccttgcaaggtttgtac
agggaaaggagaatggctgatttatcaccccagaaagtgttaaatggtac
ctcagcggcctaagagagttaatgcattgtccaaagcaggtaatttacta
gccactgactgagaaaagaatagaggatcaaaaggttgcggtgtggggga
ggggttccctggaaatgataaagcctggctctttttatttcttactcacc
acacctctccggttttcttgaaaacaggaacacacacacacacacacaca
cacacacacacacacacacacacacacgagagagagagagagagagagag
agagagagagagagagagagagaaacagagagaaacagatgcacacactc
acagagcgagagagcaagaaagagcgagagcgaaagagagagagagagca
gcacacaaaaagtcaggtccccagtgggtgggaggatctgactggaatct
cagtttgtctgagctcaagtcttacctggggatatgacctccagctcaga
agtgaagcgcctccctcaccagttgcggggtgtcttctttcaagggctgg
cctgacttaaggtctctgatcgaatggcagatgcccacctcattcctctt
tcctgtagcaagagtgcatttcgcatttcatgcgctgcacttccgtagag
tgatgtttcattgccaatgccagaattgtcggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25949703_25950559
seq2: B6Ng01-278F20.b_43_898 (reverse)

seq1  ACACACACACACACACACACACACACATATATGTATAATGTATATAATGT  50
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  ACACAC-CACACACAC-CACACACACATATATGTATAATGTATATAATGT  48

seq1  CCTATCTATATTTTCATAGGTTTTCTGTCCTCCTTTCCATTTTTGTTTAT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTATCTATATTTTCATAGG-TTTCTGTCCTCCTTTCCATTTTTGTTTAT  97

seq1  AAA-TTAATGTTTCTCTTACTGATTTTTAAAGAAAATTAAAGGTAGAATA  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATGTTTCTCTTACTGATTTTTAAAGAAAATTAAAGGTAGAATA  147

seq1  GATATTAAAGCTTTATCCTATTTATAATGAACATATTTACC-AATTATTT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GATATTAAAGCTTTATCCTATTTATAATGAACATATTTACCAAATTATTT  197

seq1  AACATTTAACTTTATTTGAACTTTTTTTTATGTCTTTAAACATTTATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAACTTTATTTGAACTTTTTTTTATGTCTTTAAACATTTATTTT  247

seq1  ACATACACACAGCATTCAAAGTGCTTTGACTATACTCATATCCTGTCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACAGCATTCAAAGTGCTTTGACTATACTCATATCCTGTCCAA  297

seq1  CTCCTCCTAGATCTCTCATCTCCCCACCAGTTTCATGCCATTCTTATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTAGATCTCTCATCTCCCCACCAGTTTCATGCCATTCTTATTTT  347

seq1  TAAATAACTCCATTGTAAGCCCAGTTAGCGTAGCCCATACACACCCACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTCCATTGTAAGCCCAGTTAGCGTAGCCCATACACACCCACAT  397

seq1  GTGGGTTCATCCACTGGAACATGGCCAGTTTACCAGCGGCCACACCCCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCATCCACTGGAACATGGCCAGTTTACCAGCGGCCACACCCCTA  447

seq1  AAGACTGACTTTCCTTCTCCTCACAGCCATCAACTGTCAATAACCCCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGACTTTCCTTCTCCTCACAGCCATCAACTGTCAATAACCCCTCA  497

seq1  GTGAGGGACGAGTTTCATATGCCACCTACATGTGCTGCAATGTCTAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGACGAGTTTCATATGCCACCTACATGTGCTGCAATGTCTAATAG  547

seq1  CTTGATCTTGTGCAGGTTTTGTACAGCCAATCCTAGCTGCAGTGAGTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTGTGCAGGTTTTGTACAGCCAATCCTAGCTGCAGTGAGTTCA  597

seq1  AGCACGTGGTGGTCCTGTCATGTCCAGTGGACATTCTTTCTCAGCAGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGGTGGTCCTGTCATGTCCAGTGGACATTCTTTCTCAGCAGTCC  647

seq1  CCCATGTCTCACAATGTTGCTTCCCCTCATCCCTCTATTTCACTCTTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCTCACAATGTTGCTTCCCCTCATCCCTCTATTTCACTCTTTCC  697

seq1  CACTCCTCATTATCCTCCTTCTGTTATGGGGCTTTATGGAAATTGTTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCATTATCCTCCTTCTGTTATGGGGCTTTATGGAAATTGTTTGC  747

seq1  CTTGTAAGACACAATGTATTTGGATTGTCAAGCTCTGGAGATGAGCTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACACAATGTATTTGGATTGTCAAGCTCTGGAGATGAGCTTGT  797

seq1  ATGAGCCCCATAGCCTGAGTTCCTATGAGATACTTCTTTCTTACCTTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCCATAGCCTGAGTTCCTATGAGATACTTCTTTCTTACCTTTAG  847

seq1  ACTGAATTC  857
      |||||||||
seq2  ACTGAATTC  856

seq1: chr19_25802548_25803640
seq2: B6Ng01-278F20.g_64_1148

seq1  GAATTCAGTGCAGATCAGGATTTCCATCACAGGTTAAGACGAAGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAGATCAGGATTTCCATCACAGGTTAAGACGAAGGCTGGG  50

seq1  AAGTATTTTTAATTTCAGGGCTCTCCTCTGCCCACCATGGCATTTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTTAATTTCAGGGCTCTCCTCTGCCCACCATGGCATTTTCATT  100

seq1  TTTCATTACGTAACCTGTCCTGAGTGTGGGCACAACGGCGAGTGAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTACGTAACCTGTCCTGAGTGTGGGCACAACGGCGAGTGAGGGAC  150

seq1  CAAGGGACTGAGTGGGAGGACAGACGCCAGGCCATTGTGTCTTCCCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACTGAGTGGGAGGACAGACGCCAGGCCATTGTGTCTTCCCATGA  200

seq1  TTCATTTGCATAATTTTCAGTTAGCTCCTGATTTACACACAAGGCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGCATAATTTTCAGTTAGCTCCTGATTTACACACAAGGCTCAGA  250

seq1  TCATGACTCCATTTCGTCTGAAACATTAGTCAGGGAGCCAGCATGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTCCATTTCGTCTGAAACATTAGTCAGGGAGCCAGCATGTTCAG  300

seq1  GCTCCGGCACCAGGCTTTGCCCTGCTCTTAATCCAGAGGCACCTGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGCACCAGGCTTTGCCCTGCTCTTAATCCAGAGGCACCTGCCCTT  350

seq1  TCATAATTCTCCACAGCTAGAGACATGTAAAAACCTTGCAAGGTTTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTCTCCACAGCTAGAGACATGTAAAAACCTTGCAAGGTTTGTAC  400

seq1  AGGGAAAGGAGAATGGCTGATTTATCACCCCAGAAAGTGTTAAATGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGAGAATGGCTGATTTATCACCCCAGAAAGTGTTAAATGGTAC  450

seq1  CTCAGCGGCCTAAGAGAGTTAATGCATTGTCCAAAGCAGGTAATTTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGGCCTAAGAGAGTTAATGCATTGTCCAAAGCAGGTAATTTACTA  500

seq1  GCCACTGACTGAGAAAAGAATAGAGGATCAAAAGGTTGCGGTGTGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGACTGAGAAAAGAATAGAGGATCAAAAGGTTGCGGTGTGGGGGA  550

seq1  GGGGTTCCCTGGAAATGATAAAGCCTGGCTCTTTTTATTTCTTACTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCCTGGAAATGATAAAGCCTGGCTCTTTTTATTTCTTACTCACC  600

seq1  ACACCTCTCCGGTTTTCTTGAAAACAGGAACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTCCGGTTTTCTTGAAAACAGGAACACACACACACACACACACA  650

seq1  CACACACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACGAGAGAGAGAGAGAGAGAGAGAG  700

seq1  AGAGAGAGAGAGAGAGAGAGAGAAACAGAGAGAAACAGATGCACACACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAAACAGAGAGAAACAGATGCACACACTC  750

seq1  ACAGAGCGAGAGAGCAAGAAAGAGCGAGAGCGAAAGAGAGAGAGAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCGAGAGAGCAAGAAAGAGCGAGAGCGAAAGAGAGAGAGAGAGCA  800

seq1  GCACACAAAAAGTCAGGTCCCCAGTGGGTGGGAGGATCTGACTGGAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAAAAGTCAGGTCCCCAGTGGGTGGGAGGATCTGACTGGAATCT  850

seq1  CAGTTTGTCTGAGCTCAGGTCTTACCTGGGGATATGA-CTCCAGCTCAGG  899
      ||||||||||||||||| ||||||||||||||||||| |||||||||| |
seq2  CAGTTTGTCTGAGCTCAAGTCTTACCTGGGGATATGACCTCCAGCTCA-G  899

seq1  AGGTGAAGCGCCTCCCTCA-CAGTTGCGGGGTGTCTTCCTTCCAGGGCTG  948
      | ||||||||||||||||| |||||||||||||||||| ||| |||||| 
seq2  AAGTGAAGCGCCTCCCTCACCAGTTGCGGGGTGTCTTCTTTCAAGGGCT-  948

seq1  GGCTTGACTTAGGTTCTCTGATCGAATGGCGAATGCCCACCTCATTCCTC  998
      ||| ||||||| | ||||||||||||||||  ||||||||||||||||||
seq2  GGCCTGACTTAAGGTCTCTGATCGAATGGCAGATGCCCACCTCATTCCTC  998

seq1  -TTCCTGTAGCAAAGAGTGCATTTGGCATTTTCATGGCGCTGCACTTCCG  1047
       |||||||||| |||||||||||| ||| |||||| ||||||||||||||
seq2  TTTCCTGTAGC-AAGAGTGCATTTCGCA-TTTCAT-GCGCTGCACTTCCG  1045

seq1  TAGAGTGATGGTTTTTCCATTTGCCAATGGCAAGATATGTCGGCAA  1093
      ||||||||||   ||||   |||||||| || |||  |||||||||
seq2  TAGAGTGATG---TTTC--ATTGCCAAT-GCCAGAATTGTCGGCAA  1085