BAC Information

Click to search

BAC

Clone NameB6Ng01-278K24
Chromosome19 (Build37)
Map Location 46,417,288 - 46,545,573
singlet/doubletdoublet
Overlap gene2310034G01Rik, Tmem180, Actr1a, Sufu
Upstream geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2
Downstream geneTrim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278K24.bB6Ng01-278K24.g
ACCGA078867GA078868
length1,0571,169
definitionB6Ng01-278K24.b B6Ng01-278K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,544,495 - 46,545,573)(46,417,288 - 46,418,463)
sequence
gaattccagcctcagtgggccaggcagaaacgctgatgaatagcctctgg
aggtagggtgggggctgccagagaagactcacatagcacacagggcttga
gagtctcaagctggagggaaaaataaattgttgaaagtcagctaaagtca
ccttggtaactgccacaacacactcacccagaacgaggacatcaaaccca
actgcaaacagctctaaagaagcggcaaagagcttaatcatctgaggaat
taatgtgacaagtgcccacatttacacctcccaccaaccttcaatcattt
gagaaaacatactttaatcttttaagaaaaaaaaaatctcaaaatgctag
ctctgcactcctggagcctgggtatttccggcatgcagcttcaatggaaa
ggcggctgcttcacacacgctggggcccggctttttgctgatttgttttt
tctggacatcgatgcagaagcatgaattatttgtgtgggccgggcgaggt
attaaatctgcagccgacacaggtttgcatggttgtcagcttaatcttag
tcataaaaaaataagtagtgtgctaggcagcatggcctcgtttttcagct
gggctttctccatagtgaaggaaggcagagctcctggggctgggggctgg
gaaggcctaggggacctaggtcccatgggatcacgagtgtgctctaggag
gcacatcgcagctcacattctaggtgaccttggcaaatgacctttttctc
tctctctctctctctcttttttttttttttttgagaacaaagctttgcca
tgtagcccaggctggtcgtttcttctttttaattttatgttatttattta
tctactatgtgtatgcacatgtgcacagatatgccagtgtgcagaggtca
ggggcaatgcataggggtttccttcctcttccgtatggtttcagacttca
gacaggaccagttttacttactaagcgactgtcttcagttctccaagcat
cctcagtcctactgcaagctgctcccaccctgaacctcccagagactctc
ctttaga
gaattccataggctgtgagctctagcagacgccctagggactcagttctg
gtgcccggctgtgctataccatcaacaccaaggctataggaaaccagata
gctcccaatcacagctgcccagtggatgctcctgggggctccttagctga
accttttgtttgtttgtttgtttaattaattaattaattaattaattatt
attattttttgaaatggggtttcttctgtgtagttctgggtgtcctggaa
cttgcgttgtagaccaggttggccttgaactcatagatctgccttcctct
gcctcccaagtgctgggattaacggcattagccaccaccttcaggctcca
aacattattaatagcactgacttggggtactcttctgctcaaagccttca
gtggcttcccaaccaaacccatcctcctgtggggaatcagggtgggggct
cctctgagacagaatacttatataactcagaatacctataaaacccagga
tacctacataacccaggatccctacataacccaggatacctgtataaccc
aggatacctgtataacccaggatatctatgtaacccaggatacctgtata
acccaggatacctacataacccaggatacctgtataaccgaggatacctg
tataacccaggatacctgtataacccaggatacctgtataacccaggata
cctgtataacccaggatacctgtataacccaggatatctatgtaacccag
gatacctgtataacccaggatatctacgtaacccaggatacctgtataag
ccaggataccctgtataacccaggatacctgtgtaacccaggataactat
ctaaccatgaataacctgcaactactgctcttcctgcctctacctccaag
tgtttacagacatgctccactctatccgccctggatctgttcgctgtgtg
acagtcctccaggatgacgtccctgagctctcagactgatattcactgct
gtctcgtcgtgataactgctgcttccctcttctgctcctgcttcactctg
gtggctctgctctgctcttcttggtacttcatccccattccaatcaatca
caggcctatctggttctttccgaagctctgcctcgacagtgtgcggtgaa
ttccccgggtttcctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46544495_46545573
seq2: B6Ng01-278K24.b_47_1103 (reverse)

seq1  TCTAAAGGGAAGAGTCTCTGGGGGAAGGTTCAGGGTTGGGAGCAGGCTTT  50
      ||||||||  ||||||||||||   |||||||||| |||||||||   ||
seq2  TCTAAAGG--AGAGTCTCTGGG---AGGTTCAGGG-TGGGAGCAG--CTT  42

seq1  GCCAGGTAGGGACTGAGGGATGCTGGGAGAACCTGAAGGCCAGGTCTGCT  100
      ||   ||| ||||||| ||||||| |||||| |||||| |   ||| || 
seq2  GC--AGTA-GGACTGA-GGATGCTTGGAGAA-CTGAAGAC--AGTC-GC-  83

seq1  TTAGTAAGTAAAACTTGGTCCCTTGTCTGAAGTCTGAAACCATACGG-AG  149
      |||||||||||||| ||||||  |||||||||||||||||||||||| ||
seq2  TTAGTAAGTAAAAC-TGGTCC--TGTCTGAAGTCTGAAACCATACGGAAG  130

seq1  A-GAAGG-AACCCCTATGCATTGCCCCCTGACCTCTGCACACTGGCATAT  197
      | ||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAAGGAAACCCCTATGCATTG-CCCCTGACCTCTGCACACTGGCATAT  179

seq1  CTGTGCACATGTGCATACACATAGTAGATAAATAAATAACATAAAATTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACATGTGCATACACATAGTAGATAAATAAATAACATAAAATTAA  229

seq1  AAAGAAGAAACGACCAGCCTGGGCTACATGGCAAAGCTTTG-TCTCAAAA  296
      ||||||||||||||||||||||||||||||||||||||||| ||||    
seq2  AAAGAAGAAACGACCAGCCTGGGCTACATGGCAAAGCTTTGTTCTC----  275

seq1  AAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAAAAAGGTCATTTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAAAAAGGTCATTTGC  325

seq1  CAAGGTCACCTAGAATGTGAGCCTGCGATGTGCCTCCTAGAGCACACTCG  396
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAGGTCACCTAGAATGTGAG-CTGCGATGTGCCTCCTAGAGCACACTCG  374

seq1  TGATCCCATGGGACCTAGGTCCCCTAGGCCTTCCCAGCCCCCAGCCCCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCATGGGACCTAGGTCCCCTAGGCCTTCCCAGCCCCCAGCCCCAG  424

seq1  GAGCTCTGCCTTCCTTCACTATGGAGAAAGCCCAGCTGAAAAACGAGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGCCTTCCTTCACTATGGAGAAAGCCCAGCTGAAAAACGAGGCC  474

seq1  ATGCTGCCTAGCACACTACTTATTTTTTTATGACTAAGATTAAGCTGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCTAGCACACTACTTATTTTTTTATGACTAAGATTAAGCTGACA  524

seq1  ACCATGCAAACCTGTGTCGGCTGCAGATTTAATACCTCGCCCGGCCCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAAACCTGTGTCGGCTGCAGATTTAATACCTCGCCCGGCCCACA  574

seq1  CAAATAATTCATGCTTCTGCATCGATGTCCAGAAAAAACAAATCAGCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTCATGCTTCTGCATCGATGTCCAGAAAAAACAAATCAGCAAA  624

seq1  AAGCCGGGCCCCAGCGTGTGTGAAGCAGCCGCCTTTCCATTGAAGCTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGGCCCCAGCGTGTGTGAAGCAGCCGCCTTTCCATTGAAGCTGCA  674

seq1  TGCCGGAAATACCCAGGCTCCAGGAGTGCAGAGCTAGCATTTTGAGATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAAATACCCAGGCTCCAGGAGTGCAGAGCTAGCATTTTGAGATTT  724

seq1  TTTTTTTCTTAAAAGATTAAAGTATGTTTTCTCAAATGATTGAAGGTTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTAAAAGATTAAAGTATGTTTTCTCAAATGATTGAAGGTTGG  774

seq1  TGGGAGGTGTAAATGTGGGCACTTGTCACATTAATTCCTCAGATGATTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGTAAATGTGGGCACTTGTCACATTAATTCCTCAGATGATTAA  824

seq1  GCTCTTTGCCGCTTCTTTAGAGCTGTTTGCAGTTGGGTTTGATGTCCTCG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGCCGCTTCTTTAGAGCTGTTTGCAGTTGGGTTTGATGTCCTCG  874

seq1  TTCTGGGTGAGTGTGTTGTGGCAGTTACCAAGGTGACTTTAGCTGACTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTGAGTGTGTTGTGGCAGTTACCAAGGTGACTTTAGCTGACTTT  924

seq1  CAACAATTTATTTTTCCCTCCAGCTTGAGACTCTCAAGCCCTGTGTGCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTTATTTTTCCCTCCAGCTTGAGACTCTCAAGCCCTGTGTGCTA  974

seq1  TGTGAGTCTTCTCTGGCAGCCCCCACCCTACCTCCAGAGGCTATTCATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTTCTCTGGCAGCCCCCACCCTACCTCCAGAGGCTATTCATCA  1024

seq1  GCGTTTCTGCCTGGCCCACTGAGGCTGGAATTC  1079
      |||||||||||||||||||||||||||||||||
seq2  GCGTTTCTGCCTGGCCCACTGAGGCTGGAATTC  1057

seq1: chr19_46417288_46418463
seq2: B6Ng01-278K24.g_68_1236

seq1  GAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGCTGTGAGCTCTAGCAGACGCCCTAGGGACTCAGTTCTG  50

seq1  GTGCCCGGCTGTGCTATACCATCAACACCAAGGCTATAGGAAACCAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGCTGTGCTATACCATCAACACCAAGGCTATAGGAAACCAGATA  100

seq1  GCTCCCAATCACAGCTGCCCAGTGGATGCTCCTGGGGGCTCCTTAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATCACAGCTGCCCAGTGGATGCTCCTGGGGGCTCCTTAGCTGA  150

seq1  ACCTTTTGTTTGTTTGTTTGTTTAATTAATTAATTAATTAATTAATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGTTTGTTTGTTTGTTTAATTAATTAATTAATTAATTAATTATT  200

seq1  ATTATTTTTTGAAATGGGGTTTCTTCTGTGTAGTTCTGGGTGTCCTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTGAAATGGGGTTTCTTCTGTGTAGTTCTGGGTGTCCTGGAA  250

seq1  CTTGCGTTGTAGACCAGGTTGGCCTTGAACTCATAGATCTGCCTTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGTTGTAGACCAGGTTGGCCTTGAACTCATAGATCTGCCTTCCTCT  300

seq1  GCCTCCCAAGTGCTGGGATTAACGGCATTAGCCACCACCTTCAGGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCTGGGATTAACGGCATTAGCCACCACCTTCAGGCTCCA  350

seq1  AACATTATTAATAGCACTGACTTGGGGTACTCTTCTGCTCAAAGCCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTAATAGCACTGACTTGGGGTACTCTTCTGCTCAAAGCCTTCA  400

seq1  GTGGCTTCCCAACCAAACCCATCCTCCTGTGGGGAATCAGGGTGGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCCCAACCAAACCCATCCTCCTGTGGGGAATCAGGGTGGGGGCT  450

seq1  CCTCTGAGACAGAATACTTATATAACTCAGAATACCTATAAAACCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGACAGAATACTTATATAACTCAGAATACCTATAAAACCCAGGA  500

seq1  TACCTACATAACCCAGGATCCCTACATAACCCAGGATACCTGTATAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACATAACCCAGGATCCCTACATAACCCAGGATACCTGTATAACCC  550

seq1  AGGATACCTGTATAACCCAGGATATCTATGTAACCCAGGATACCTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACCTGTATAACCCAGGATATCTATGTAACCCAGGATACCTGTATA  600

seq1  ACCCAGGATACCTACATAACCCAGGATACCTGTATAACCGAGGATACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGATACCTACATAACCCAGGATACCTGTATAACCGAGGATACCTG  650

seq1  TATAACCCAGGATACCTGTATAACCCAGGATACCTGTATAACCCAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCAGGATACCTGTATAACCCAGGATACCTGTATAACCCAGGATA  700

seq1  CCTGTATAACCCAGGATACCTGTATAACCCAGGATATCTATGTAACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATAACCCAGGATACCTGTATAACCCAGGATATCTATGTAACCCAG  750

seq1  GATACCTGTATAACCCAGGATATCTACGTAACCCAGGATACCTGTATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGTATAACCCAGGATATCTACGTAACCCAGGATACCTGTATAAG  800

seq1  CCAGGATA-CCTGTATAACCCAGGATACCTGTGTAACCCAGGATAACTAT  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATACCCTGTATAACCCAGGATACCTGTGTAACCCAGGATAACTAT  850

seq1  CTAACCATGAATAACCTGCAACTACTGCTCTTCCTGCCTCTACCTCCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAACCATGAATAACCTGCAACTACTGCTCTTCCTGCCTCTACCT-CCAA  899

seq1  GTGTTTACAGACATGCTCCACTCTATCCGCCCTGGATCTGTTCGCTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACAGACATGCTCCACTCTATCCGCCCTGGATCTGTTCGCTGTGT  949

seq1  GACAGTCCTCCAGGATGACGTCCCCTGAGCTCTCAGACTGATATTCACTG  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACAGTCCTCCAGGATGACGT-CCCTGAGCTCTCAGACTGATATTCACTG  998

seq1  CTGTCTCGTCCGTGATAACTGCTGCTTCCTCCTTCTGCCTCCTGCTTTCA  1049
      ||||||||| |||||||||||||||||||  |||||| ||||||| ||||
seq2  CTGTCTCGT-CGTGATAACTGCTGCTTCCCTCTTCTG-CTCCTGC-TTCA  1045

seq1  CTCTTGTTGGCTCCTGCTCTGCTCTTCTTGGGTTACCTCATCCCCA-TCC  1098
      ||| || ||||| ||||||||||||||||||  ||| ||||||||| |||
seq2  CTC-TGGTGGCT-CTGCTCTGCTCTTCTTGG--TACTTCATCCCCATTCC  1091

seq1  CATCCATCACAGCCCTATCTG--TCCTT-CGAAGCTTCCTTTGCCTTCCC  1145
       ||| ||||||| ||||||||  || || |||||    || |||||   |
seq2  AATCAATCACAGGCCTATCTGGTTCTTTCCGAAG----CTCTGCCT---C  1134

seq1  GACAGTG---CGTGGATTCCCCGTG-TTCCTCCCC  1176
      |||||||    ||| |||||||| | |||||||||
seq2  GACAGTGTGCGGTGAATTCCCCGGGTTTCCTCCCC  1169