BAC Information

Click to search

BAC

Clone NameB6Ng01-280B16
Chromosome19 (Build37)
Map Location 26,110,018 - 26,227,686
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280B16.bB6Ng01-280B16.g
ACCGA079917GA079918
length1,1091,160
definitionB6Ng01-280B16.b B6Ng01-280B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,110,018 - 26,111,125)(26,227,009 - 26,227,686)
sequence
gaattcattttggtgatatatgtgaagtaccttgccttttagagacttaa
gtatagtgctttgttcttggtttggtgtcactttcaagtgatactctggc
tatggtgacagtgattcagatttgttaagtttggctaactccttcggaat
ccctatgggatgatactgaacaatatgaaagatctgcctctaagcagttt
aggggaataagcctttccacatagtgtagtattacgggtctaacctcagt
gtgggttacaatactgcttggtactatgttattccttatgcctagctgca
gacaaactgttgtctatgaaagacagacaagctggtagtgcaccagccat
ggacaaaagtgtgtacaggaaagagtcaaaaaaaaaaaaaggcaacaaca
aagaggacttcctgcatagcttgtgtgatcttttatagctgagaatccag
gcacaagacgtatgcagctgcagtgagcagagccacccagccaaagcgag
agaagccacaaactggttgctttattcttgagtggtgttgaagagggaat
gaatatcctacagaggaggaagctaagatggttcctatctattctttatt
atattgcattttgttttaaaatctaaatggatttctttgtcttgaccata
ttttctctggtcaagaagtgtgatattaatttgcagacgtctagcaaggc
attgtggctcatacatttaattccagcacttgccagggcagaggtaggca
gatctctgtgagttcaaggccaacctagtctacaaaaaagagttccagga
cagccagggctgttacacagagaaaccctgtcttggggaaaaaaaaaaaa
aaaaaacaacagacaaacaaacaaaaacaaagcaacacaaaaccaaaaaa
caaacccacccaataacaagaaaatatttgcagatgttcctatgtagcct
aagccagctttgtacctcatttcaacaatacatatttttgtaaaagctta
tacttgtttcttgaagacttcctgagttatgtagagatggctgctgaata
aacatggtttttgtgactatctttttttattcctcttgtgagcaaatatt
caaagcacc

gaattccaggacagccagggctacacagagaaaccctgtctcaaaagacc
aaccaaacaacaacaacaaatgaaccaaacacataggaaaatggatttaa
tcagtcactgacaaaagtgaatcataataataataataagtaacacaacc
aaattggtaaagatgccaagaaattaaaattctcatatactattcaggga
atacaacatctgttaactttgtcatacctattaaagcagagcaactgtat
aagctccgccttgatagtcccctctatgaagagacctaccaatacctgtt
cacatctccaccgaaacttgtcaaaatttccctgtcagcattattttccc
tggaagtaaaataacccaaattccaatcgataataaaatggatctttttg
ataaaactatgcagtaaataccttactgttataataatgcatttttagac
taaataaatatttataacatttaccaaaaaataatgttgagtttcaaaag
aaacatacacaacagtcaggctatgggaatattatttataccatgttcaa
agccaggcaaaagttatcaatggcaacagatccaggggagttggttctct
gagggaaagggtcaaggctagagaagattttcaaaaacatagtgtgatat
cattgcacatatattagggtgattattatttttcagaagaaaagcatgta
tttgtgagacatttcaaaaattaaaagcaaaacactattcacaatggtca
atacatgaaaacaatctaggtatcattaacaaatggtcactaggagatgc
accatggagtcaaccattggtctcaacctccctagttctgtggccctttg
atacatctcctcatgttgtgatgaccaccaatcaaaagttgttttgttac
tacttcataactgtcattttggtattattatgaatcctaataatacaggt
atctgacatgcaggatgtgtgacacacccccccaaaagggtttgcaaccc
acaggttgtgactatatatagacatactaatctccatctaaggtaccact
ttcctgactagcatatttttctttttcccgtctgactctcgcatgtttta
tgttactcgcctgcagttactcatactatactaagatctggagccagcct
atgttctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26110018_26111125
seq2: B6Ng01-280B16.b_47_1155

seq1  GAATTCATTTTGGTGATATATGTGAAGTACCTTGCCTTTTAGAGACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGTGATATATGTGAAGTACCTTGCCTTTTAGAGACTTAA  50

seq1  GTATAGTGCTTTGTTCTTGGTTTGGTGTCACTTTCAAGTGATACTCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGCTTTGTTCTTGGTTTGGTGTCACTTTCAAGTGATACTCTGGC  100

seq1  TATGGTGACAGTGATTCAGATTTGTTAAGTTTGGCTAACTCCTTCGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGACAGTGATTCAGATTTGTTAAGTTTGGCTAACTCCTTCGGAAT  150

seq1  CCCTATGGGATGATACTGAACAATATGAAAGATCTGCCTCTAAGCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGGATGATACTGAACAATATGAAAGATCTGCCTCTAAGCAGTTT  200

seq1  AGGGGAATAAGCCTTTCCACATAGTGTAGTATTACGGGTCTAACCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATAAGCCTTTCCACATAGTGTAGTATTACGGGTCTAACCTCAGT  250

seq1  GTGGGTTACAATACTGCTTGGTACTATGTTATTCCTTATGCCTAGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTACAATACTGCTTGGTACTATGTTATTCCTTATGCCTAGCTGCA  300

seq1  GACAAACTGTTGTCTATGAAAGACAGACAAGCTGGTAGTGCACCAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTGTTGTCTATGAAAGACAGACAAGCTGGTAGTGCACCAGCCAT  350

seq1  GGACAAAAGTGTGTACAGGAAAGAGTCAAAAAAAAAAAAAGGCAACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAGTGTGTACAGGAAAGAGTCAAAAAAAAAAAAAGGCAACAACA  400

seq1  AAGAGGACTTCCTGCATAGCTTGTGTGATCTTTTATAGCTGAGAATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACTTCCTGCATAGCTTGTGTGATCTTTTATAGCTGAGAATCCAG  450

seq1  GCACAAGACGTATGCAGCTGCAGTGAGCAGAGCCACCCAGCCAAAGCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGACGTATGCAGCTGCAGTGAGCAGAGCCACCCAGCCAAAGCGAG  500

seq1  AGAAGCCACAAACTGGTTGCTTTATTCTTGAGTGGTGTTGAAGAGGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACAAACTGGTTGCTTTATTCTTGAGTGGTGTTGAAGAGGGAAT  550

seq1  GAATATCCTACAGAGGAGGAAGCTAAGATGGTTCCTATCTATTCTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCTACAGAGGAGGAAGCTAAGATGGTTCCTATCTATTCTTTATT  600

seq1  ATATTGCATTTTGTTTTAAAATCTAAATGGATTTCTTTGTCTTGACCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCATTTTGTTTTAAAATCTAAATGGATTTCTTTGTCTTGACCATA  650

seq1  TTTTCTCTGGTCAAGAAGTGTGATATTAATTTGCAGACGTCTAGCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGGTCAAGAAGTGTGATATTAATTTGCAGACGTCTAGCAAGGC  700

seq1  ATTGTGGCTCATACATTTAATTCCAGCACTTGCCAGGGCAGAGGTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTCATACATTTAATTCCAGCACTTGCCAGGGCAGAGGTAGGCA  750

seq1  GATCTCTGTGAGTTCAAGGCCAACCTAGTCTACAAAAAAGAGTTCCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTGAGTTCAAGGCCAACCTAGTCTACAAAAAAGAGTTCCAGGA  800

seq1  CAGCCAGGGCTGTTACACAGAGAAACCCTGTCTTGGGGAAAAAAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTGTTACACAGAGAAACCCTGTCTTGGGGAAAAAAAAAAAA  850

seq1  AAAAAACAACAGACAAACAAACAAAAAACAAAGCAACACAAAACCAAAAA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAACAACAGACAAACAAAC-AAAAACAAAGCAACACAAAACCAAAAA  899

seq1  ACAAACCAACCAAATAAACAAAGAAAAATATTTGCAGATG-TCCTATGTA  949
      ||||||| ||| ||| |||||   |||||||||||||||| |||||||||
seq2  ACAAACCCACCCAAT-AACAA--GAAAATATTTGCAGATGTTCCTATGTA  946

seq1  GCCTAAGCCAGCTTTGTA-CTCA-TTCAACAATACATA-TTTTGTAAAGG  996
      |||||||||||||||||| |||| |||||||||||||| ||||||||| |
seq2  GCCTAAGCCAGCTTTGTACCTCATTTCAACAATACATATTTTTGTAAAAG  996

seq1  C-TATACT--GTTCTTG-AGACTTTCCTGAGTTATGTAGAGGAATGGGTT  1042
      | ||||||   |||||| |||| ||||||||||||||||||  || || |
seq2  CTTATACTTGTTTCTTGAAGAC-TTCCTGAGTTATGTAGAG--AT-GGCT  1042

seq1  GCTG-ATAAACATTGTTTTTGTGACTATCTTTTTTTATTCCTCTTGTGAG  1091
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAAACATGGTTTTTGTGACTATCTTTTTTTATTCCTCTTGTGAG  1092

seq1  GAAATATTTAAAGCACC  1108
       ||||||| ||||||||
seq2  CAAATATTCAAAGCACC  1109


seq1: chr19_26227009_26227686
seq2: B6Ng01-280B16.g_593_1226 (reverse)

seq1  ATGAGAACATTCAGAAATGATTAATTAAAATAATGAGAAAACATAGCTTG  50
                                      |||||  |||||||  ||
seq2  --------------------------------ATGAG--AACATAGGCTG  16

seq1  AGATTCAGATCTTTAGTATAGTATGAAGTAAACTGCA-GCGAGTAAACAT  99
       | | |||||| ||||||||||||| ||| ||||||| |||||| |||||
seq2  -GCTCCAGATC-TTAGTATAGTATG-AGT-AACTGCAGGCGAGT-AACAT  61

seq1  -AAACATGCGAGAGGTCCAGAAGGGGAAAAG-AAAATATGCTAAGTCAGG  147
       |||||||||||||   |||| ||| ||||| |||||||||| |||||||
seq2  AAAACATGCGAGAG--TCAGACGGGAAAAAGAAAAATATGCT-AGTCAGG  108

seq1  AAAAGTTGTTACCTTTAGATGGAGATTAGTATTTGTCTATTATATTTGTC  197
      |||   || |||| |||||||||||||||||  |||||| |||| | |||
seq2  AAA--GTGGTACC-TTAGATGGAGATTAGTA--TGTCTA-TATA-TAGTC  151

seq1  ACAACCTGTGGGTTGCAAACCCTTT--GGGGGGTGTGTCACACATCCTGC  245
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ACAACCTGTGGGTTGCAAACCCTTTTGGGGGGGTGTGTCACACATCCTGC  201

seq1  ATGTCAGATACCTGTATTATTAGGATTCATAATAATACCAAAATGACAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGATACCTGTATTATTAGGATTCATAATAATACCAAAATGACAGT  251

seq1  TATGAAGTAGTAACAAAACAACTTTTGATTGGTGGTCATCACAACATGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTAGTAACAAAACAACTTTTGATTGGTGGTCATCACAACATGAG  301

seq1  GAGATGTATCAAAGGGCCACAGAACTAGGGAGGTTGAGACCAATGGTTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTATCAAAGGGCCACAGAACTAGGGAGGTTGAGACCAATGGTTGA  351

seq1  CTCCATGGTGCATCTCCTAGTGACCATTTGTTAATGATACCTAGATTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGTGCATCTCCTAGTGACCATTTGTTAATGATACCTAGATTGTT  401

seq1  TTCATGTATTGACCATTGTGAATAGTGTTTTGCTTTTAATTTTTGAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATTGACCATTGTGAATAGTGTTTTGCTTTTAATTTTTGAAATG  451

seq1  TCTCACAAATACATGCTTTTCTTCTGAAAAATAATAATCACCCTAATATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATACATGCTTTTCTTCTGAAAAATAATAATCACCCTAATATA  501

seq1  TGTGCAATGATATCACACTATGTTTTTGAAAATCTTCTCTAGCCTTGACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATGATATCACACTATGTTTTTGAAAATCTTCTCTAGCCTTGACC  551

seq1  CTTTCCCTCAGAGAACCAACTCCCCTGGATCTGTTGCCATTGATAACTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCAGAGAACCAACTCCCCTGGATCTGTTGCCATTGATAACTTT  601

seq1  TGCCTGGCTTTGAACATGGTATAAATAATATTC  678
      |||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTTTGAACATGGTATAAATAATATTC  634


| Home | SequenceCutter | Blast | Download |