BAC Information

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BAC

Clone NameB6Ng01-281M16
Chromosome19 (Build37)
Map Location 5,251,197 - 5,400,409
singlet/doubletdoublet
Overlap genePacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip
Upstream geneSsh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneEG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M16.bB6Ng01-281M16.g
ACCGA081178GA081179
length965946
definitionB6Ng01-281M16.b B6Ng01-281M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,399,370 - 5,400,409)(5,251,197 - 5,251,771)
sequence
gaattctggagagaagggctcagaagagggggagctgcagagccacaacc
agggaagcagctctagcttcaacagtctccgaaagccacagaaggggatc
tcaagggccaaggacctgaaggggccctgggacctggagcggctacacag
gcagttacaggaagaactggaatgtggttagtaccgcagggaggcctgag
gtgccgccatcctgggaactctgtgctcagatggaggggtggggtcggcg
gtagaagctggggtgggccaggagttgtctggatgctgggtggaactgcc
cagggaaccaggagagagtgtgatccagacttggtgttcccatggaaagg
tccccagaagcagacctggaaggcgctgcgggcagctgtccaggcctctg
ccaggaacaagaagacccccatcttgggagatgatgaaagtttcttgtct
gccaacttccctaatcgtactttccataaacgacaggaagccaccaggtg
aggacaaaagaggaagggaagcaagaagtgagggaaggtggagaggggcg
tctttctttcttcctttctttctttctctctctctctctctttctttctt
tctttctctctctctctttctttcttttctctttctttcttccttccttc
ctctctctcttttttttctttctctctctttctcattcttccttccttcc
tctctcttttttccttccttccttccttcctttctttttctttttttttt
tttttttttttttaaaagatttatttatttatatgtaagtacactgtaag
ctgtcttcagacactccagaagagaggagtcaaaatcttgttacagatgg
gttgtgagccaccatgggggttgctgggattttgaactctggaacttcca
gaagagcattcgggtgtctcttacccactggagccatctcacctgccctc
ttttttccttttttt
gaattctaaacccagaacttagtaactaccctttcaactactcacattta
aattctaagtagagtaaatacagttacctaaagaaatgttcaaagtttag
tgattaaatcaaaacgaccctgagattccacctttcaccaatcagaatgg
ctaagatcaaaaccataggtgacaacacatgttggagaggatatggagaa
agaggaacactcctccattgctggtgggattgcaaactggtacaaccact
ctggaaatcagtctagaggttcctcagaaaattgcaaatagatctacctg
aagacccagctataccactcttgggaatatacccaaaagatgccccacca
tgtcacaggggcacctgttccactatgttcatagcggcttcatttgtaat
agccagaagctggaaacaacccagatgtctcatgacaggaggatggatac
aaaaaatgtggttcattaacacaatggaatactactcagctattaagaat
gaggacatttggagttttgcagaaaaattgatagaacaagaaaatatcat
cctgagtgaggtaactcagacccaaaaggatatgcatggactcaagatac
agtccccagaactcaaaaaggtcaacaagccaaggtgctcaagtgaggat
gcctcagtcccacttgagaaggagaagaaagcaaccacaagttggcggtg
gggggaacctgatctggtattgagtgagggaaaaggactgaagccctgag
ggccagcagaaaaaatggaaacaggcaacctctgtagataggaggttggg
gggaccctccagaatgcaccagagacttggggaggtgagagactctcagg
actcaaagggaccttagatgaaatgccctacagtgggggagagggaagtt
atagagccccacttccagcagaaagacaggacatcaaatgcaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5399370_5400409
seq2: B6Ng01-281M16.b_47_993 (reverse)

seq1  GGCAGGTGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGACAGCCAGGGCTACACAGAAAAACCCTGTCTCGAAAAAAAGAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGCTGGTGAGATGGCT-CAGTGGGTAAGAG-CACCCGACTGCTCTTC  148
         ||| |||||||||||| ||||||||||||| ||||||| ||||||||
seq2  ---GGCAGGTGAGATGGCTCCAGTGGGTAAGAGACACCCGAATGCTCTTC  47

seq1  T-GAAGGTCCAGAGTTC-AAATCCCAGCAA-CCACATGGTGGCTCACAA-  194
      | |||| |||||||||| |||||||||||| || ||||||||||||||| 
seq2  TGGAAGTTCCAGAGTTCAAAATCCCAGCAACCCCCATGGTGGCTCACAAC  97

seq1  CCATCTGTAACAAGA-TCTGACTCC-CTCTTCTGGAGTGTCTGAAGACAG  242
      ||||||||||||||| | ||||||| ||||||||||||||||||||||||
seq2  CCATCTGTAACAAGATTTTGACTCCTCTCTTCTGGAGTGTCTGAAGACAG  147

seq1  C-TACAGTGTACTTACATATAAATAAATAAATCTTTAAAAAAAAAAAAAA  291
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTACAGTGTACTTACATATAAATAAATAAATCTTTTAAAAAAAAAAAAA  197

seq1  AAAAAAAAAAGAAAAAGAAAGGAAGGAAGGAAGGAAGGAAAAAAGAGAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAAAGAAAGGAAGGAAGGAAGGAAGGAAAAAAGAGAGA  247

seq1  GGAAGGAAGGAAGAATGAGAAAGAGAGAGAAAGAAAAAAAAGAGAGAGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGAATGAGAAAGAGAGAGAAAGAAAAAAAAGAGAGAGAG  297

seq1  GAAGGAAGGAAGAAAGAAAGAG-AAAGAAAGAAAGAGAGAGAGAGAAAGA  440
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGAAAGAAAGAGAAAAGAAAGAAAGAGAGAGAGAGAAAGA  347

seq1  AAGAAAGAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGGAAGAAAGAAAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAGAGAGAGAGAGAGAAAGAAAGAAAGGAAGAAAGAAAGA  397

seq1  CGCCCCTCTCCACCTTCCCTCACTTCTTGCTTCCCTTCCTCTTTTGTCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTCTCCACCTTCCCTCACTTCTTGCTTCCCTTCCTCTTTTGTCCT  447

seq1  CACCTGGTGGCTTCCTGTCGTTTATGGAAAGTACGATTAGGGAAGTTGGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTGGCTTCCTGTCGTTTATGGAAAGTACGATTAGGGAAGTTGGC  497

seq1  AGACAAGAAACTTTCATCATCTCCCAAGATGGGGGTCTTCTTGTTCCTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAACTTTCATCATCTCCCAAGATGGGGGTCTTCTTGTTCCTGG  547

seq1  CAGAGGCCTGGACAGCTGCCCGCAGCGCCTTCCAGGTCTGCTTCTGGGGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCTGGACAGCTGCCCGCAGCGCCTTCCAGGTCTGCTTCTGGGGA  597

seq1  CCTTTCCATGGGAACACCAAGTCTGGATCACACTCTCTCCTGGTTCCCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATGGGAACACCAAGTCTGGATCACACTCTCTCCTGGTTCCCTG  647

seq1  GGCAGTTCCACCCAGCATCCAGACAACTCCTGGCCCACCCCAGCTTCTAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTCCACCCAGCATCCAGACAACTCCTGGCCCACCCCAGCTTCTAC  697

seq1  CGCCGACCCCACCCCTCCATCTGAGCACAGAGTTCCCAGGATGGCGGCAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGACCCCACCCCTCCATCTGAGCACAGAGTTCCCAGGATGGCGGCAC  747

seq1  CTCAGGCCTCCCTGCGGTACTAACCACATTCCAGTTCTTCCTGTAACTGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCTCCCTGCGGTACTAACCACATTCCAGTTCTTCCTGTAACTGC  797

seq1  CTGTGTAGCCGCTCCAGGTCCCAGGGCCCCTTCAGGTCCTTGGCCCTTGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCGCTCCAGGTCCCAGGGCCCCTTCAGGTCCTTGGCCCTTGA  847

seq1  GATCCCCTTCTGTGGCTTTCGGAGACTGTTGAAGCTAGAGCTGCTTCCCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTTCTGTGGCTTTCGGAGACTGTTGAAGCTAGAGCTGCTTCCCT  897

seq1  GGTTGTGGCTCTGCAGCTCCCCCTCTTCTGAGCCCTTCTCTCCAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGCTCTGCAGCTCCCCCTCTTCTGAGCCCTTCTCTCCAGAATTC  947

seq1: chr19_5251197_5251771
seq2: B6Ng01-281M16.g_72_646

seq1  GAATTCTAAACCCAGAACTTAGTAACTACCCTTTCAACTACTCACATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCCAGAACTTAGTAACTACCCTTTCAACTACTCACATTTA  50

seq1  AATTCTAAGTAGAGTAAATACAGTTACCTAAAGAAATGTTCAAAGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAGTAGAGTAAATACAGTTACCTAAAGAAATGTTCAAAGTTTAG  100

seq1  TGATTAAATCAAAACGACCCTGAGATTCCACCTTTCACCAATCAGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAATCAAAACGACCCTGAGATTCCACCTTTCACCAATCAGAATGG  150

seq1  CTAAGATCAAAACCATAGGTGACAACACATGTTGGAGAGGATATGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCAAAACCATAGGTGACAACACATGTTGGAGAGGATATGGAGAA  200

seq1  AGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACT  250

seq1  CTGGAAATCAGTCTAGAGGTTCCTCAGAAAATTGCAAATAGATCTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATCAGTCTAGAGGTTCCTCAGAAAATTGCAAATAGATCTACCTG  300

seq1  AAGACCCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGCTATACCACTCTTGGGAATATACCCAAAAGATGCCCCACCA  350

seq1  TGTCACAGGGGCACCTGTTCCACTATGTTCATAGCGGCTTCATTTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGGGCACCTGTTCCACTATGTTCATAGCGGCTTCATTTGTAAT  400

seq1  AGCCAGAAGCTGGAAACAACCCAGATGTCTCATGACAGGAGGATGGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGCTGGAAACAACCCAGATGTCTCATGACAGGAGGATGGATAC  450

seq1  AAAAAATGTGGTTCATTAACACAATGGAATACTACTCAGCTATTAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTGGTTCATTAACACAATGGAATACTACTCAGCTATTAAGAAT  500

seq1  GAGGACATTTGGAGTTTTGCAGAAAAATTGATAGAACAAGAAAATATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTTGGAGTTTTGCAGAAAAATTGATAGAACAAGAAAATATCAT  550

seq1  CCTGAGTGAGGTAACTCAGACCCAA  575
      |||||||||||||||||||||||||
seq2  CCTGAGTGAGGTAACTCAGACCCAA  575