BAC Information

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BAC

Clone NameB6Ng01-283M08
Chromosome19 (Build37)
Map Location 49,293,250 - 49,294,380
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283M08.bB6Ng01-283M08.g
ACCGA082645GA082646
length1,2091,139
definitionB6Ng01-283M08.b B6Ng01-283M08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcgcctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggcgacagc
agatgctggcgtgaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactgaacgatccagcaatacctctcctgggc
atatatccagaagatgacccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctgcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgctaagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagatactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcaaaa
ggacccagatgtaactgtctcttgtgagactattctgggccctagcaaac
acagaagtggatgctcacagtcagccaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataagtgggaacacattatgaactaaccagtaccccggagcttcttgact
ctagctgcatatgtatcaaaagatgggcctagttggccatccactggaaa
ggagaggcccattggaacaacacaacttattattgccccaagtacaggat
gcaatgctaaaaggggaatgggtgttgttttaggagtaaattgtaggtct
ccatcatca
gaattcaacccacagaacacaggtagttgaaggagaaaactggatccttc
aggtgttcatctgtcaaagcacagacatgtccaagtacatacacacacag
cataagcatgcacacacacacacacacacacacacacacacacacacaca
cacacacagaggaagatgtaaaacaagcatttgctagggactaggttatt
ttcttctcctctcatatgttgaagtcttacattttaatagaatgaccagt
agagctgggaggagttccagtggtagagatttccctggtgttcataatgc
cgtgatttttatctttagcatcagtagtaattaagtacataaataaacat
ggagctgagaactttgggaaataacctgattcagataatttcatgagtgt
caagccttttctctgattagtgtcctatagttagagatatgagacaccca
ttcagtaaggaataattgaattgacacaaggagatattgtaactgttttc
aaggcaaaagaagaatccttactaagactccaatggcagcaccgtaaata
tggaccttatagcctctataactgtgaaataatttctatcattaaagaca
gttggtttggtatttttattatggcaccttgcagatattgatatagtttc
ataaacaaaaccaagtgacatggtttgattttccccttgatgatgtttct
aaaatacatacttgatgtgggaaattataaatatataataatttccaatg
gaaatgatctcttaggtattaaatgttaatatgtttatggctaatttata
cacaaagtagaagagtataatagattctggaaccagataacctgggaaat
gatctaggttctaccacacaatatttgcttagtttcgtgatttagtttgt
tactttatccctaaaacaaacattaaaataacattaatttcatgtgtttg
tgaggattaaaaaatgaagccacataaaggctcttgaagcaaaggacata
tacggtcgttgttatcatcgtcgtcatcgtagttcatcattgacatcatc
cagcagcagtttcagaaaaacaacacttctttaactaaaataccatgggc
aaaaacattttgaggacacattcacttacttttctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49293250_49294380
seq2: B6Ng01-283M08.g_64_1202

seq1  GAATTCAACCCACAGAACACAGGTAGTTGAAGGAGAAAACTGGATCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCACAGAACACAGGTAGTTGAAGGAGAAAACTGGATCCTTC  50

seq1  AGGTGTTCATCTGTCAAAGCACAGACATGTCCAAGTACATACACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCATCTGTCAAAGCACAGACATGTCCAAGTACATACACACACAG  100

seq1  CATAAGCATGCACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATGCACACACACACACACACACACACACACACACACACACACA  150

seq1  CACACACAGAGGAAGATGTAAAACAAGCATTTGCTAGGGACTAGGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGGAAGATGTAAAACAAGCATTTGCTAGGGACTAGGTTATT  200

seq1  TTCTTCTCCTCTCATATGTTGAAGTCTTACATTTTAATAGAATGACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCTCTCATATGTTGAAGTCTTACATTTTAATAGAATGACCAGT  250

seq1  AGAGCTGGGAGGAGTTCCAGTGGTAGAGATTTCCCTGGTGTTCATAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGAGGAGTTCCAGTGGTAGAGATTTCCCTGGTGTTCATAATGC  300

seq1  CGTGATTTTTATCTTTAGCATCAGTAGTAATTAAGTACATAAATAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTTTTATCTTTAGCATCAGTAGTAATTAAGTACATAAATAAACAT  350

seq1  GGAGCTGAGAACTTTGGGAAATAACCTGATTCAGATAATTTCATGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGAACTTTGGGAAATAACCTGATTCAGATAATTTCATGAGTGT  400

seq1  CAAGCCTTTTCTCTGATTAGTGTCCTATAGTTAGAGATATGAGACACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTTCTCTGATTAGTGTCCTATAGTTAGAGATATGAGACACCCA  450

seq1  TTCAGTAAGGAATAATTGAATTGACACAAGGAGATATTGTAACTGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAGGAATAATTGAATTGACACAAGGAGATATTGTAACTGTTTTC  500

seq1  AAGGCAAAAGAAGAATCCTTACTAAGACTCCAATGGCAGCACCGTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAAGAAGAATCCTTACTAAGACTCCAATGGCAGCACCGTAAATA  550

seq1  TGGACCTTATAGCCTCTATAACTGTGAAATAATTTCTATCATTAAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTATAGCCTCTATAACTGTGAAATAATTTCTATCATTAAAGACA  600

seq1  GTTGGTTTGGTATTTTTATTATGGCACCTTGCAGATATTGATATAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGGTATTTTTATTATGGCACCTTGCAGATATTGATATAGTTTC  650

seq1  ATAAACAAAACCAAGTGACATGGTTTGATTTTCCCCTTGATGATGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAACCAAGTGACATGGTTTGATTTTCCCCTTGATGATGTTTCT  700

seq1  AAAATACATACTTGATGTGGGAAATTATAAATATATAATAATTTCCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATACTTGATGTGGGAAATTATAAATATATAATAATTTCCAATG  750

seq1  GAAATGATCTCTTAGGTATTAAATGTTAATATGTTTATGGCTAATTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATCTCTTAGGTATTAAATGTTAATATGTTTATGGCTAATTTATA  800

seq1  CACAAAGTAGAAGAGTATAATAGATTCTGGAACCAGATAACCTGGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTAGAAGAGTATAATAGATTCTGGAACCAGATAACCTGGGAAAT  850

seq1  GATCTAGGTTCTACCACACAATATTTGCTTAGTTTCGTGATTTAGTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGTTCTACCACACAATATTTGCTTAGTTTCGTGATTTAGTTTGT  900

seq1  TACTTTATCCCTAAAACAAACATTAAAATAACATTAATTTCATGTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATCCCTAAAACAAACATTAAAATAACATTAATTTCATGTGTTTG  950

seq1  TGAGGATTAAAAAATGAAGCCACAT-AAGGCTCTTG-AGC-AAGGACATA  997
      ||||||||||||||||||||||||| |||||||||| ||| |||||||||
seq2  TGAGGATTAAAAAATGAAGCCACATAAAGGCTCTTGAAGCAAAGGACATA  1000

seq1  TACGGTCGTTGTTATCATCGTCGTCATCGTAG-TCATCATTGACATCATC  1046
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TACGGTCGTTGTTATCATCGTCGTCATCGTAGTTCATCATTGACATCAT-  1049

seq1  CCAGCAGCAGTTTCAG--AAACAACACCTTCTTTAAAACT-AAATA-CAT  1092
      ||||||||||||||||  |||||||| |||||||  |||| ||||| |||
seq2  CCAGCAGCAGTTTCAGAAAAACAACA-CTTCTTT--AACTAAAATACCAT  1096

seq1  GG---CAAACATTTTGAGGACACATTTCAC-TAC-TTTCTCTAC  1131
      ||    |||||||||||||||||| ||||| ||| |||||||||
seq2  GGGCAAAAACATTTTGAGGACACA-TTCACTTACTTTTCTCTAC  1139