BAC Information

Click to search

BAC

Clone NameB6Ng01-284B12
Chromosome14 (Build37)19 (Build37)
Map Location 108,651,225 - 108,652,34217,332,704 - 17,332,745
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284B12.bB6Ng01-284B12.g
ACCGA082883GA082884
length1,111228
definitionB6Ng01-284B12.b B6Ng01-284B12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,651,225 - 108,652,342)(17,332,704 - 17,332,745)
sequence
gaattcacttacattatcatacttggtgcaaaagtacctgccagtgtgca
aagtgcaaatgtgtttgtttgtttgtttgttttgtttggggaggtaagac
ttgtttgggtattggcatttttttctgactactaagacaatgaattacat
ttaagaggtatatgaagtaaatgtccatggcccagactctaccatctttt
tagaacggtgctagagttgctaaccatgctcaagagtaaacgatattact
caatgagaagaaacaagtcatgattcttctgacttgcttccattcacaca
ttttgtggtcagttccattgcatttctagtcaaaggtagttttatcttct
atctcaaaccatcttctcttccctctttttctttctgaattggatttgct
atacttgcaggagtgccttgcttaacaataaggaatgcactgttaaataa
ttttgaatttgtgtgagtttaatttagtaaacaaaactagagtctttatt
cttctatacccttagattatttggcatctaagtttggtattgtcaatttc
tacgagcactgtgataaacataattatgaggtgctaaactaggtctaagg
tgatataaccaggacacgcttaacaattctgcacagcgctagtgctgaca
ttgcataattattctgctcagcagtaattgcattttagacttcaaccaaa
agtagtgatgaaagtattgcatcaatacatgctgaaatagcaaagtagtg
ttttgatataattatgatgtgccatatctaattttactaatatgttttat
gttgcttgcagcagtgcagatttgaatctaccaccattagcattatcata
ctctgacacttacatcaaatatgactgtgacatcactaactgcaaaaata
ctggatttatattataatcttatggaactgtacaacatcgtgtattaaac
tttgattaaagcatttttatagggcatgactagatttataaaatatatat
cctattagaaggttagctttactggagtgagatttcagtagtttcatcta
tctggtcatagtcatatcaaagcattttaaatgtgtttgatggtattaaa
aagaacacagc

tttaattagctctgtacccaactttttagtgggtttatatgaatttctcg
agttcagcttctaattccaagttaattctaattggaggtcagaaaaagta
ataaatcaaacaagatatgacagaatgaattaatagaataagccaacagt
catgaggacagttaaaagatacaatttaagggaggatgtatatatatata
tatggagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108651225_108652342
seq2: B6Ng01-284B12.b_48_1158 (reverse)

seq1  GCTGTGTTCTTTTTTAATAACATCAAACACATTTTAAAATGCCTTTGATA  50
      ||||||||| ||||||||| ||||||||||| ||||||||| ||||||||
seq2  GCTGTGTTC-TTTTTAATACCATCAAACACA-TTTAAAATG-CTTTGATA  47

seq1  TGACTATGACCAAGATAGATGGAAACTACTGAAATCCTCACTCCAGTAAA  100
      ||||||||||| |||||||| |||||||||||||| ||||||||||||||
seq2  TGACTATGACC-AGATAGAT-GAAACTACTGAAAT-CTCACTCCAGTAAA  94

seq1  GCTAACCTTCTAATAGGGATATATATTTTATAAATCTAGTCATGCCCTAT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTAACCTTCTAATA-GGATATATATTTTATAAATCTAGTCATGCCCTAT  143

seq1  AAAAATGCTTTAATCAAAGTTTAATACACGATGTTGTACAGTTCCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTTAATCAAAGTTTAATACACGATGTTGTACAGTTCCATAAG  193

seq1  ATTATAATATAAATCCAGTATTTTTGCAGTTAGTGATGTCACAGTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATATAAATCCAGTATTTTTGCAGTTAGTGATGTCACAGTCATAT  243

seq1  TTGATGTAAGTGTCAGAGTATGATAATGCTAATGGTGGTAGATTCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTAAGTGTCAGAGTATGATAATGCTAATGGTGGTAGATTCAAATC  293

seq1  TGCACTGCTGCAAGCAACATAAAACATATTAGTAAAATTAGATATGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTGCAAGCAACATAAAACATATTAGTAAAATTAGATATGGCAC  343

seq1  ATCATAATTATATCAAAACACTACTTTGCTATTTCAGCATGTATTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATTATATCAAAACACTACTTTGCTATTTCAGCATGTATTGATGC  393

seq1  AATACTTTCATCACTACTTTTGGTTGAAGTCTAAAATGCAATTACTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCATCACTACTTTTGGTTGAAGTCTAAAATGCAATTACTGCTG  443

seq1  AGCAGAATAATTATGCAATGTCAGCACTAGCGCTGTGCAGAATTGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATAATTATGCAATGTCAGCACTAGCGCTGTGCAGAATTGTTAAG  493

seq1  CGTGTCCTGGTTATATCACCTTAGACCTAGTTTAGCACCTCATAATTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTGGTTATATCACCTTAGACCTAGTTTAGCACCTCATAATTATG  543

seq1  TTTATCACAGTGCTCGTAGAAATTGACAATACCAAACTTAGATGCCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAGTGCTCGTAGAAATTGACAATACCAAACTTAGATGCCAAAT  593

seq1  AATCTAAGGGTATAGAAGAATAAAGACTCTAGTTTTGTTTACTAAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGGGTATAGAAGAATAAAGACTCTAGTTTTGTTTACTAAATTAA  643

seq1  ACTCACACAAATTCAAAATTATTTAACAGTGCATTCCTTATTGTTAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACAAATTCAAAATTATTTAACAGTGCATTCCTTATTGTTAAGCA  693

seq1  AGGCACTCCTGCAAGTATAGCAAATCCAATTCAGAAAGAAAAAGAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCCTGCAAGTATAGCAAATCCAATTCAGAAAGAAAAAGAGGGAA  743

seq1  GAGAAGATGGTTTGAGATAGAAGATAAAACTACCTTTGACTAGAAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATGGTTTGAGATAGAAGATAAAACTACCTTTGACTAGAAATGCA  793

seq1  ATGGAACTGACCACAAAATGTGTGAATGGAAGCAAGTCAGAAGAATCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTGACCACAAAATGTGTGAATGGAAGCAAGTCAGAAGAATCATG  843

seq1  ACTTGTTTCTTCTCATTGAGTAATATCGTTTACTCTTGAGCATGGTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCTTCTCATTGAGTAATATCGTTTACTCTTGAGCATGGTTAGC  893

seq1  AACTCTAGCACCGTTCTAAAAAGATGGTAGAGTCTGGGCCATGGACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCACCGTTCTAAAAAGATGGTAGAGTCTGGGCCATGGACATTT  943

seq1  ACTTCATATACCTCTTAAATGTAATTCATTGTCTTAGTAGTCAGAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATATACCTCTTAAATGTAATTCATTGTCTTAGTAGTCAGAAAAAA  993

seq1  ATGCCAATACCCAAACAAGTCTTACCTCCCCAAACAAAACAAACAAACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATACCCAAACAAGTCTTACCTCCCCAAACAAAACAAACAAACAA  1043

seq1  ACAAACACATTTGCACTTTGCACACTGGCAGGTACTTTTGCACCAAGTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATTTGCACTTTGCACACTGGCAGGTACTTTTGCACCAAGTAT  1093

seq1  GATAATGTAAGTGAATTC  1118
      ||||||||||||||||||
seq2  GATAATGTAAGTGAATTC  1111


seq1: chr19_17332704_17332745
seq2: B6Ng01-284B12.g_259_300 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCATATATATATATATACA  42
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCATATATATATATATACA  42


| Home | SequenceCutter | Blast | Download |